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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ547
Library VS
(Link to library)
Clone ID VSJ547
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10352-1
Original site URL
Representative seq. ID VSJ547P
(Link to Original site)
Representative DNA sequence 
>VSJ547 (VSJ547Q) /CSM/VS/VSJ5-B/VSJ547Q.Seq.d/
ATAATATTAGNAGNTTTATTTATTACTATATNTATTATTATTATTTTATTTATTATTTAT
TATTTNTATATTATTATATAGTAATAAATAAAACTACTAATAATAATAGTAATAATAATA
ATAATAATAATACACAAAAATGAAAATGCAAAGATTTTATAAATTTTTAAANNTNGAAAA
ACCAATGAACCATTCAGAGTTATTGAAAGCATTTTCAATGCAAAAGATTTATTTACATGA
TGCTAAGAAAGTCACTATTCTCACATCAAAAAAAGGTGGTGGTTTATCAGCACCTAGAAT
TTTCAAATATAAATTCTTAGAACCAATCATATTTTGGAATAAGGACGTTCACTTTGAATA
TCAAAAAAATNNGNTNCTGAACCACGTGTTTTAGTTGAAAATCTTANTGGAAGNGANCAC
ACCATTCCAATCNATXXXXXXXXXXAATAATAATAGTAATAATAATAATAATAATATTAG
TAGTTTTATTTATTACTATATTATTATTATTATTTTATTTATTATTTATTATTTTTATAT
TATTATATAGTAATAAATAAAACTACTAATAATAATAGTAATAATAATAATAATAATAAT
ACACAAAAATGAAAATGCAAAGATTTTATAAATTTTTAAATATTGAAAAACCAATGAACC
ATTCAGAGTTATTGAAAGCATTTTCAATGCAAAAGATTTATTTACATGATGCTAAGAAAG
TCACTATTCTCACATCAAAAAAAGGTGGTGGTTTATCAGCACCTAGAATTTTCAAATATA
AATTCTTAGAACCAATCATATTTTGGAATAAGGACGTTCACTTTGAATATCAAAAAAATT
TGATACTGAACCACGTGTTTTAGTTGAAAATCTTAATGGAAGTGAACACACCATTCCAAT
CAATTCAAAAAATGCCGATCAAATTTTAGAAGAAATTTTAAGAGCTACAAAGGAAAAAGA
GTCGATGTTAACATTCCAATTTAATTTAAAAAAATAAATAAAAAAAATAAATAGA
sequence update 2001. 3.22
Translated Amino Acid sequence 
iilxxlfitixiiiilfiiyyxyiii***iklliiiviiiiiiihknenakil*ifkxxk
tnepfrviesifnakdlft*c*eshyshikkrwwfist*nfqi*ilrtnhile*grsl*I
SKKXXXEPRVLVENLXGXXHTIPIX---

---IIIVIIIIIILVVLFITILLLLFYLLFIIFILLYSNK*ny***********ytkmkm
qrfykflniekpmnhsellkafsmqkiylhdakkvtiltskkggglsaprifkykflepi
ifwnkdvhfeyqknlilnhvf*lkilmevntpfqsiqkmpikf*kkf*elqrkksrc*hs
nli*knk*kk*i
Translated Amino Acid sequence (All Frames) 
Frame A:
iilxxlfitixiiiilfiiyyxyiii***iklliiiviiiiiiihknenakil*ifkxxk
tnepfrviesifnakdlft*c*eshyshikkrwwfist*nfqi*ilrtnhile*grsl*I
SKKXXXEPRVLVENLXGXXHTIPIX---

---nnnsnnnnnnissfiyyyiiiiilfiiyyfyiii***iklliiiviiiiiiihknen
akil*ifky*ktnepfrviesifnakdlft*c*eshyshikkrwwfist*nfqi*ilrtn
hile*grsl*iskkfdteprvlvenlngsehtipinsknadqileeilratkekesmltf
qfnlkk*ikkinr

Frame B:
*y*xxylllyxlllfyllfiixillysnk*ny***********ytkmkmqrfykflxxek
pmnhsellkafsmqkiylhdakkvtiltskkggglsaprifkykflepiifwnkdvhfey
qknxxlnhvf*lkilxexxtpfqs---

---IIIVIIIIIILVVLFITILLLLFYLLFIIFILLYSNK*ny***********ytkmkm
qrfykflniekpmnhsellkafsmqkiylhdakkvtiltskkggglsaprifkykflepi
ifwnkdvhfeyqknlilnhvf*lkilmevntpfqsiqkmpikf*kkf*elqrkksrc*hs
nli*knk*kk*i

Frame C:
nixxfiyyyxyyyyfiyyllfxyyyivinkttnnnsnnnnnnntqk*kckdfinf*xxkn
q*tiqsy*khfqckrfiymmlrkslfshqkkvvvyqhlefsnins*nqsyfgirtftlni
kkxxx*ttcfs*ksxwkxxhhsnx---

---*********y**fylllyyyyyfiyyllflyyyivinkttnnnsnnnnnnntqk*kc
kdfinf*ilknq*tiqsy*khfqckrfiymmlrkslfshqkkvvvyqhlefsnins*nqs
yfgirtftlnikki*y*ttcfs*ks*wk*thhsnqfkkcrsnfrrnfksykgkrvdvnip
i*fkkinkknk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ547 (VSJ547Q) /CSM/VS/VSJ5-B/VSJ547Q.Seq.d/                        682   0.0
VSF692 (VSF692Q) /CSM/VS/VSF6-D/VSF692Q.Seq.d/                        662   0.0
SSM410 (SSM410Q) /CSM/SS/SSM4-A/SSM410Q.Seq.d/                        654   0.0
VSG885 (VSG885Q) /CSM/VS/VSG8-D/VSG885Q.Seq.d/                        519   e-146
VSA123 (VSA123Q) /CSM/VS/VSA1-A/VSA123Q.Seq.d/                         36   1.0
VFN207 (VFN207Q) /CSM/VF/VFN2-A/VFN207Q.Seq.d/                         36   1.0
VFF562 (VFF562Q) /CSM/VF/VFF5-C/VFF562Q.Seq.d/                         36   1.0
SLB778 (SLB778Q) /CSM/SL/SLB7-D/SLB778Q.Seq.d/                         36   1.0
VSI607 (VSI607Q) /CSM/VS/VSI6-A/VSI607Q.Seq.d/                         34   4.0
VSH825 (VSH825Q) /CSM/VS/VSH8-B/VSH825Q.Seq.d/                         34   4.0
own update 2003. 7. 9
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL365394|AL365394.26 Human DNA sequence from clone RP11-275D4 on chromosome 13.    52  0.010  2
CC070631|CC070631.1 CSU-K33r.3H14.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.3H14, DNA sequence.    38  0.027  2
AF060264|AF060264.1 Neochanna diversus strain Kaimaumau30 mitochondrial D-loop, complete sequence.    36  0.55  2
AF060265|AF060265.1 Neochanna diversus strain Kaimaumau26 mitochondrial D-loop, complete sequence.    36  0.56  2
AF060263|AF060263.1 Neochanna diversus strain Kaimaumau20 mitochondrial D-loop, complete sequence.    36  0.56  2
AF060262|AF060262.1 Neochanna diversus strain Kaimaumau14 mitochondrial D-loop, complete sequence.    36  0.57  2
AZ531913|AZ531913.1 ENTBU20TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    30  0.76  3
AC120907|AC120907.4 Rattus norvegicus clone CH230-75F8, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.84  1
BH373382|BH373382.1 AG-ND-158M13.TR ND-TAM Anopheles gambiae genomic clone AG-ND-158M13 , DNA sequence.    46  0.84  1
AC098624|AC098624.9 Rattus norvegicus clone CH230-103A6, WORKING DRAFT SEQUENCE, 6 unordered pieces.    46  0.84  1
dna update 2003. 7.20
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 1,007,905,866
protein update 2009. 3.25
PSORT 

 psg: 0.74  gvh: 0.55  alm: -0.02  top: 0.63  tms: 0.13  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for VSJ547 is end
5' end seq. ID VSJ547F
5' end seq. 
>VSJ547F.Seq
ATAATATTAGNAGNTTTATTTATTACTATATNTATTATTATTATTTTATTTATTATTTAT
TATTTNTATATTATTATATAGTAATAAATAAAACTACTAATAATAATAGTAATAATAATA
ATAATAATAATACACAAAAATGAAAATGCAAAGATTTTATAAATTTTTAAANNTNGAAAA
ACCAATGAACCATTCAGAGTTATTGAAAGCATTTTCAATGCAAAAGATTTATTTACATGA
TGCTAAGAAAGTCACTATTCTCACATCAAAAAAAGGTGGTGGTTTATCAGCACCTAGAAT
TTTCAAATATAAATTCTTAGAACCAATCATATTTTGGAATAAGGACGTTCACTTTGAATA
TCAAAAAAATNNGNTNCTGAACCACGTGTTTTAGTTGAAAATCTTANTGGAAGNGANCAC
ACCATTCCAATCNAT----------
Length of 5' end seq. 435
3' end seq. ID VSJ547Z
3' end seq. 
>VSJ547Z.Seq
----------AATAATAATAGTAATAATAATAATAATAATATTAGTAGTTTTATTTATTA
CTATATTATTATTATTATTTTATTTATTATTTATTATTTTTATATTATTATATAGTAATA
AATAAAACTACTAATAATAATAGTAATAATAATAATAATAATAATACACAAAAATGAAAA
TGCAAAGATTTTATAAATTTTTAAATATTGAAAAACCAATGAACCATTCAGAGTTATTGA
AAGCATTTTCAATGCAAAAGATTTATTTACATGATGCTAAGAAAGTCACTATTCTCACAT
CAAAAAAAGGTGGTGGTTTATCAGCACCTAGAATTTTCAAATATAAATTCTTAGAACCAA
TCATATTTTGGAATAAGGACGTTCACTTTGAATATCAAAAAAATTTGATACTGAACCACG
TGTTTTAGTTGAAAATCTTAATGGAAGTGAACACACCATTCCAATCAATTCAAAAAATGC
CGATCAAATTTTAGAAGAAATTTTAAGAGCTACAAAGGAAAAAGAGTCGATGTTAACATT
CCAATTTAATTTAAAAAAATAAATAAAAAAAATAAATAGA
Length of 3' end seq. 570
Connected seq. ID VSJ547P
Connected seq. 
>VSJ547P.Seq
ATAATATTAGNAGNTTTATTTATTACTATATNTATTATTATTATTTTATTTATTATTTAT
TATTTNTATATTATTATATAGTAATAAATAAAACTACTAATAATAATAGTAATAATAATA
ATAATAATAATACACAAAAATGAAAATGCAAAGATTTTATAAATTTTTAAANNTNGAAAA
ACCAATGAACCATTCAGAGTTATTGAAAGCATTTTCAATGCAAAAGATTTATTTACATGA
TGCTAAGAAAGTCACTATTCTCACATCAAAAAAAGGTGGTGGTTTATCAGCACCTAGAAT
TTTCAAATATAAATTCTTAGAACCAATCATATTTTGGAATAAGGACGTTCACTTTGAATA
TCAAAAAAATNNGNTNCTGAACCACGTGTTTTAGTTGAAAATCTTANTGGAAGNGANCAC
ACCATTCCAATCNAT----------AATAATAATAGTAATAATAATAATAATAATATTAG
TAGTTTTATTTATTACTATATTATTATTATTATTTTATTTATTATTTATTATTTTTATAT
TATTATATAGTAATAAATAAAACTACTAATAATAATAGTAATAATAATAATAATAATAAT
ACACAAAAATGAAAATGCAAAGATTTTATAAATTTTTAAATATTGAAAAACCAATGAACC
ATTCAGAGTTATTGAAAGCATTTTCAATGCAAAAGATTTATTTACATGATGCTAAGAAAG
TCACTATTCTCACATCAAAAAAAGGTGGTGGTTTATCAGCACCTAGAATTTTCAAATATA
AATTCTTAGAACCAATCATATTTTGGAATAAGGACGTTCACTTTGAATATCAAAAAAATT
TGATACTGAACCACGTGTTTTAGTTGAAAATCTTAATGGAAGTGAACACACCATTCCAAT
CAATTCAAAAAATGCCGATCAAATTTTAGAAGAAATTTTAAGAGCTACAAAGGAAAAAGA
GTCGATGTTAACATTCCAATTTAATTTAAAAAAATAAATAAAAAAAATAAATAGA
Length of connected seq. 1005
Full length Seq ID -
Full length Seq. -
Length of full length seq. -