NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ535
Library VS
(Link to library)
Clone ID VSJ535
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U06395-1
Original site URL
Representative seq. ID VSJ535P
(Link to Original site)
Representative DNA sequence 
>VSJ535 (VSJ535Q) /CSM/VS/VSJ5-B/VSJ535Q.Seq.d/
AAATAATCGACACTTNAATAAATATAAATATATCAATAACAACAGCAATGTCATCATCAA
TTAAATCATTCAAACCATTATTTGATCGTATTTTAGTTCAAAGATTAAGAAACTCTGATA
TTAAAACTGGTGGCGGTATTTATATTCCAGATAAAGTTGCAAATAAAACACACGAAGCTG
TCGTAATTGAAGTTGGCACTGGAAGACGTACTGCCAATGGTTTTGCTCCACCACTCTTAA
AGAAAGGTGATCGTATTTTACTTAATGAATCTCCACTTGGAGAAAAAATCACTGTAAATG
GTGTTGAATGTGAAATTCTCTCTGAAAATGAAGTTTTAGGTTTTATGGGAAATTAAAAAA
AAATAAAATAAAATAAAAATAAATAAATAAATAAATAAATAAAACAAAAGTAATAAAAAA
AAAAXXXXXXXXXXAAATAATCGACACTTCAATAAATATAAATATATCAATAACAACAGC
AATGTCATCATCAATTAAATCATTCAAACCATTATTTGATCGTATTTTAGTTCAAAGATT
AAGAAACTCTGATATTAAAACTGGTGGCGGTATTTATATTCCAGATAAAGTTGCAAATAA
AACACACGAAGCTGTCGTAATTGAAGTTGGCACTGGAAGACGTACTGCCAATGGTTTTGC
TCCACCACTCTTAAAGAAAGGTGATCGTATTTTACTTAATGAATCTCCACTTGGAGAAAA
AATCACTGTAAATGGTGTTGAATGTGAAATTCTCTCTGAAAATGAAGTTTTAGGTTTTAT
GGGAAATTAAAAAAAAATAAAATAAAATAAAAATAAATAAATAAATAAATAAATAAAACA
AA
sequence update 2001. 3.22
Translated Amino Acid sequence 
nnrhxnkykyinnnsnviin*iiqtii*syfsskikkl*y*nwwrylysr*sck*ntrsc
rn*swhwktycqwfcsttlker*syft**istwrknhckwc*m*nsl*k*sfrfygklkk
nkik*k*ink*INKTKVIKKK---

---IIDTSININISITTAMSSSIKSFKPLFDRILVQRLRNSDIKTGGGIYIPDKVANKTH
EAVVIEVGTGRRTANGFAPPLLKKGDRILLNESPLGEKITVNGVECEILSENEVLGFMGN
*kkik*nknk*ink*ikq
Translated Amino Acid sequence (All Frames) 
Frame A:
k*stlx*i*iyq*qqqchhqlnhsnhylivf*fkd*etlilklvavfifqiklqikhtkl
s*lklaledvlpmvllhhs*rkvivfylmnlhlekksl*mvlnvkfslkmkf*vlweikk
k*nkikink*ink*nksnkkk---

---k*stlq*i*iyq*qqqchhqlnhsnhylivf*fkd*etlilklvavfifqiklqikh
tkls*lklaledvlpmvllhhs*rkvivfylmnlhlekksl*mvlnvkfslkmkf*vlwe
ikkk*nkikink*ink*nk

Frame B:
nnrhxnkykyinnnsnviin*iiqtii*syfsskikkl*y*nwwrylysr*sck*ntrsc
rn*swhwktycqwfcsttlker*syft**istwrknhckwc*m*nsl*k*sfrfygklkk
nkik*k*ink*INKTKVIKKK---

---nnrhfnkykyinnnsnviin*iiqtii*syfsskikkl*y*nwwrylysr*sck*nt
rscrn*swhwktycqwfcsttlker*syft**istwrknhckwc*m*nsl*k*sfrfygk
lkknkik*k*ink*inkt

Frame C:
iidtxininisittamsssiksfkplfdrilvqrlrnsdiktgggiyipdkvanktheav
vievgtgrrtangfappllkkgdrillnesplgekitvngveceilsenevlgfmgn*kk
ik*nknk*ink*ikqk**kk---

---IIDTSININISITTAMSSSIKSFKPLFDRILVQRLRNSDIKTGGGIYIPDKVANKTH
EAVVIEVGTGRRTANGFAPPLLKKGDRILLNESPLGEKITVNGVECEILSENEVLGFMGN
*kkik*nknk*ink*ikq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ535 (VSJ535Q) /CSM/VS/VSJ5-B/VSJ535Q.Seq.d/                        692   0.0
VSB670 (VSB670Q) /CSM/VS/VSB6-C/VSB670Q.Seq.d/                        692   0.0
VSD648 (VSD648Q) /CSM/VS/VSD6-B/VSD648Q.Seq.d/                        609   e-173
VSG255 (VSG255Q) /CSM/VS/VSG2-C/VSG255Q.Seq.d/                        605   e-172
VSG350 (VSG350Q) /CSM/VS/VSG3-C/VSG350Q.Seq.d/                         48   2e-04
AHE564 (AHE564Q) /CSM/AH/AHE5-C/AHE564Q.Seq.d/                         40   0.054
AHD861 (AHD861Q) /CSM/AH/AHD8-C/AHD861Q.Seq.d/                         40   0.054
VSD812 (VSD812Q) /CSM/VS/VSD8-A/VSD812Q.Seq.d/                         38   0.21
VHP839 (VHP839Q) /CSM/VH/VHP8-B/VHP839Q.Seq.d/                         38   0.21
VHP439 (VHP439Q) /CSM/VH/VHP4-B/VHP439Q.Seq.d/                         38   0.21
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AZ544076|AZ544076.1 ENTFH33TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  0.074  2
BI506782|BI506782.1 BB170024A20A06 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170024A20A06 5', mRNA sequence.    32  0.086  3
AC135409|AC135409.2 Rattus norvegicus clone CH230-416D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    46  0.098  3
BI815113|BI815113.1 PfESToaa14e05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O97315 O97315 PFC0985C PROTEIN. ;, mRNA sequence.    36  0.12  2
BI816384|BI816384.1 PfESToaa39g11.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O43060 O43060 HYPOTHETICAL 33.3 KD PROTEIN. ;, mRNA sequence.    36  0.14  2
AC100257|AC100257.1 Mus musculus clone RP23-66C4, LOW-PASS SEQUENCE SAMPLING.    38  0.23  2
AL591063|AL591063.6 Human DNA sequence from clone RP11-535K1 on chromosome 6.    36  0.25  3
AL935028|AL935028.14 Zebrafish DNA sequence from clone XX-95K20.    40  0.31  2
AC009843|AC009843.7 Drosophila melanogaster chromosome 3 clone BACR01G11 (D1045) RPCI-98 01.G.11 map 80B1-80D2 strain y; cn bw sp, *** SEQUENCING IN PROGRESS ***, 93 unordered pieces.    36  0.37  3
AC097814|AC097814.7 Rattus norvegicus clone CH230-34J6, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    40  0.39  3
dna update 2003. 7.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q2GCC7) RecName: Full=10 kDa chaperonin; AltName: Full=Protein ...    72   2e-11
(A9IY12) RecName: Full=10 kDa chaperonin; AltName: Full=Protein ...    72   3e-11
CP000394_2181(CP000394|pid:none) Granulibacter bethesdensis CGDN...    71   4e-11
CP000491_71(CP000491|pid:none) Paracoccus denitrificans PD1222 p...    71   5e-11
(Q983S3) RecName: Full=10 kDa chaperonin 4; AltName: Full=Protei...    71   5e-11
CP000494_2374(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl...    70   6e-11
(Q9Z463) RecName: Full=10 kDa chaperonin; AltName: Full=Protein ...    70   6e-11
(Q54J68) RecName: Full=10 kDa heat shock protein, mitochondrial;...    70   6e-11
(Q4FPA6) RecName: Full=10 kDa chaperonin; AltName: Full=Protein ...    69   1e-10
(Q98II0) RecName: Full=10 kDa chaperonin 2; AltName: Full=Protei...    69   2e-10
protein update 2009. 3.25
PSORT 

 psg: 0.76  gvh: 0.37  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for VSJ535 is cyt
5' end seq. ID VSJ535F
5' end seq. 
>VSJ535F.Seq
AAATAATCGACACTTNAATAAATATAAATATATCAATAACAACAGCAATGTCATCATCAA
TTAAATCATTCAAACCATTATTTGATCGTATTTTAGTTCAAAGATTAAGAAACTCTGATA
TTAAAACTGGTGGCGGTATTTATATTCCAGATAAAGTTGCAAATAAAACACACGAAGCTG
TCGTAATTGAAGTTGGCACTGGAAGACGTACTGCCAATGGTTTTGCTCCACCACTCTTAA
AGAAAGGTGATCGTATTTTACTTAATGAATCTCCACTTGGAGAAAAAATCACTGTAAATG
GTGTTGAATGTGAAATTCTCTCTGAAAATGAAGTTTTAGGTTTTATGGGAAATTAAAAAA
AAATAAAATAAAATAAAAATAAATAAATAAATAAATAAATAAAACAAAAGTAATAAAAAA
AAAA----------
Length of 5' end seq. 424
3' end seq. ID VSJ535Z
3' end seq. 
>VSJ535Z.Seq
----------AAATAATCGACACTTCAATAAATATAAATATATCAATAACAACAGCAATG
TCATCATCAATTAAATCATTCAAACCATTATTTGATCGTATTTTAGTTCAAAGATTAAGA
AACTCTGATATTAAAACTGGTGGCGGTATTTATATTCCAGATAAAGTTGCAAATAAAACA
CACGAAGCTGTCGTAATTGAAGTTGGCACTGGAAGACGTACTGCCAATGGTTTTGCTCCA
CCACTCTTAAAGAAAGGTGATCGTATTTTACTTAATGAATCTCCACTTGGAGAAAAAATC
ACTGTAAATGGTGTTGAATGTGAAATTCTCTCTGAAAATGAAGTTTTAGGTTTTATGGGA
AATTAAAAAAAAATAAAATAAAATAAAAATAAATAAATAAATAAATAAATAAAACAAA
Length of 3' end seq. 408
Connected seq. ID VSJ535P
Connected seq. 
>VSJ535P.Seq
AAATAATCGACACTTNAATAAATATAAATATATCAATAACAACAGCAATGTCATCATCAA
TTAAATCATTCAAACCATTATTTGATCGTATTTTAGTTCAAAGATTAAGAAACTCTGATA
TTAAAACTGGTGGCGGTATTTATATTCCAGATAAAGTTGCAAATAAAACACACGAAGCTG
TCGTAATTGAAGTTGGCACTGGAAGACGTACTGCCAATGGTTTTGCTCCACCACTCTTAA
AGAAAGGTGATCGTATTTTACTTAATGAATCTCCACTTGGAGAAAAAATCACTGTAAATG
GTGTTGAATGTGAAATTCTCTCTGAAAATGAAGTTTTAGGTTTTATGGGAAATTAAAAAA
AAATAAAATAAAATAAAAATAAATAAATAAATAAATAAATAAAACAAAAGTAATAAAAAA
AAAA----------AAATAATCGACACTTCAATAAATATAAATATATCAATAACAACAGC
AATGTCATCATCAATTAAATCATTCAAACCATTATTTGATCGTATTTTAGTTCAAAGATT
AAGAAACTCTGATATTAAAACTGGTGGCGGTATTTATATTCCAGATAAAGTTGCAAATAA
AACACACGAAGCTGTCGTAATTGAAGTTGGCACTGGAAGACGTACTGCCAATGGTTTTGC
TCCACCACTCTTAAAGAAAGGTGATCGTATTTTACTTAATGAATCTCCACTTGGAGAAAA
AATCACTGTAAATGGTGTTGAATGTGAAATTCTCTCTGAAAATGAAGTTTTAGGTTTTAT
GGGAAATTAAAAAAAAATAAAATAAAATAAAAATAAATAAATAAATAAATAAATAAAACA
AA
Length of connected seq. 832
Full length Seq ID -
Full length Seq. -
Length of full length seq. -