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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ452
Library VS
(Link to library)
Clone ID VSJ452
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13926-1
Original site URL
Representative seq. ID VSJ452P
(Link to Original site)
Representative DNA sequence 
>VSJ452 (VSJ452Q) /CSM/VS/VSJ4-C/VSJ452Q.Seq.d/
ATATCAAATAAAATGAGATTATTATTAGCCCTCTTTTTCGTTCTTGCTTTAGTTTCCCCA
TCTTTCACCCAAGTTTGGTCAAATTGTGGTACTGCTGCCGATAAATTCCAAATTACCAAT
GTAGTATTAGACCCACCAACACCAGTTAAAGGACAAGATATCACAATCAGTGCATCAGGT
ATTCTCGATGAAACCGTCACTGGTGGAAATGTTGCCGTTAAAGTCAAATATGGTTTCATT
ACACTTATCAATGAAAATGTTTCTATTTGCAGTTCTCAAGACCCATTAGCATGCCCAATT
GCTGCTGGTGATTACCAAAAGAATATGACCGAAATGATTCCATCTGATGCTCCATCAGGT
AAATACACTGGTAACGTTGTTATCACCGATCAAAACAATGCTGAAATCGCCTGTATTGAT
GTTGATATTAACTTGTAAACGAATAAAATAAAATAAAATAAAATAAAAACACACCATCGA
TAAATTATTTATAAATTAAAAAAAAAAXXXXXXXXXXATATCAAATAAAATGAGATTATT
ATTAGCCCTCTTTTTCGTTCTTGCTTTAGTTTCCCCATCTTTCACCCAAGTTTGGTCAAA
TTGTGGTACTGCTGCCGATAAATTCCAAATTACCAATGTAGTATTAGACCCACCAACACC
AGTTAAAGGACAAGATATCACAATCAGTGCATCAGGTATTCTCGATGAAACCGTCACTGG
TGGAAATGTTGCCGTTAAAGTCAAATATGGTTTCATTACACTTATCAATGAAAATGTTTC
TATTTGCAGTTCTCAAGACCCATTAGCATGCCCAATTGCTGCTGGTGATTACCAAAAGAA
TATGACCGAAATGATTCCATCTGATGCTCCATCAGGTAAATACACTGGTAACGTTGTTAT
CACCGATCAAAACAATGCTGAAATCGCCTGTATTGATGTTGATATTAACTTGTAAACGAA
TAAAATAAAATAAAATAAAATAAAAACACACCATCGNATAAAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
isnkmrlllalffvlalvspsftqvwsncgtaadkfqitnvvldpptpvkgqditisasg
ildetvtggnvavkvkygfitlinenvsicssqdplacpiaagdyqknmtemipsdapsg
kytgnvvitdqnnaeiacidvdinl*tnkik*nkikthhr*IIYKLKKK---

---ISNKMRLLLALFFVLALVSPSFTQVWSNCGTAADKFQITNVVLDPPTPVKGQDITIS
ASGILDETVTGGNVAVKVKYGFITLINENVSICSSQDPLACPIAAGDYQKNMTEMIPSDA
PSGKYTGNVVITDQNNAEIACIDVDINL*tnkik*nkikthhrin
Translated Amino Acid sequence (All Frames) 
Frame A:
isnkmrlllalffvlalvspsftqvwsncgtaadkfqitnvvldpptpvkgqditisasg
ildetvtggnvavkvkygfitlinenvsicssqdplacpiaagdyqknmtemipsdapsg
kytgnvvitdqnnaeiacidvdinl*tnkik*nkikthhr*IIYKLKKK---

---ISNKMRLLLALFFVLALVSPSFTQVWSNCGTAADKFQITNVVLDPPTPVKGQDITIS
ASGILDETVTGGNVAVKVKYGFITLINENVSICSSQDPLACPIAAGDYQKNMTEMIPSDA
PSGKYTGNVVITDQNNAEIACIDVDINL*tnkik*nkikthhrin

Frame B:
yqik*dyy*psfsfll*fphlspkfgqivvllpinsklpm*y*thqhqlkdkisqsvhqv
fsmkpslvemlplksnmvslhlsmkmflfavlkth*haqlllvitkri*pk*fhlmlhqv
ntlvtllspiktmlkspvlmliltckrik*nkik*khtidklfin*kk---

---yqik*dyy*psfsfll*fphlspkfgqivvllpinsklpm*y*thqhqlkdkisqsv
hqvfsmkpslvemlplksnmvslhlsmkmflfavlkth*haqlllvitkri*pk*fhlml
hqvntlvtllspiktmlkspvlmliltckrik*nkik*khtix*

Frame C:
ik*neiiisplfrscfsfpifhpslvklwyccr*ipnyqcsirptnts*rtryhnqciry
sr*nrhwwkccr*sqiwfhytyq*kcfylqfsrpismpnccw*lpkeydrndsi*csir*
ihw*rcyhrskqc*nrly*c*y*lvne*nkik*nkntpsinyl*ikkk---

---ik*neiiisplfrscfsfpifhpslvklwyccr*ipnyqcsirptnts*rtryhnqc
irysr*nrhwwkccr*sqiwfhytyq*kcfylqfsrpismpnccw*lpkeydrndsi*cs
ir*ihw*rcyhrskqc*nrly*c*y*lvne*nkik*nkntpsxk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ851 (VSJ851Q) /CSM/VS/VSJ8-C/VSJ851Q.Seq.d/                        874   0.0
VSJ841 (VSJ841Q) /CSM/VS/VSJ8-B/VSJ841Q.Seq.d/                        874   0.0
VSJ452 (VSJ452Q) /CSM/VS/VSJ4-C/VSJ452Q.Seq.d/                        874   0.0
VSI417 (VSI417Q) /CSM/VS/VSI4-A/VSI417Q.Seq.d/                        874   0.0
VSI354 (VSI354Q) /CSM/VS/VSI3-C/VSI354Q.Seq.d/                        874   0.0
VSA770 (VSA770Q) /CSM/VS/VSA7-C/VSA770Q.Seq.d/                        874   0.0
VHF348 (VHF348Q) /CSM/VH/VHF3-B/VHF348Q.Seq.d/                        874   0.0
VSE688 (VSE688Q) /CSM/VS/VSE6-D/VSE688Q.Seq.d/                        868   0.0
VSG174 (VSG174Q) /CSM/VS/VSG1-D/VSG174Q.Seq.d/                        866   0.0
VSG156 (VSG156Q) /CSM/VS/VSG1-C/VSG156Q.Seq.d/                        866   0.0
own update 2003. 1.10
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX405179|AX405179.1 Sequence 3 from Patent WO0229023.             40  1e-04  4
BX160259|BX160259.1 Danio rerio genomic clone DKEY-146C24, genomic survey sequence.    46  0.83  1
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.    32  1.4  5
AC010700|AC010700.3 Drosophila melanogaster clone RPCI98-31B14, WORKING DRAFT SEQUENCE, 3 unordered pieces.    44  3.3  1
AE003481|AE003481.3 Drosophila melanogaster chromosome 3L, section 15 of 83 of the complete sequence.    44  3.3  1
AC126782|AC126782.10 Medicago truncatula clone mth2-14p11, WORKING DRAFT SEQUENCE, 42 unordered pieces.    44  3.3  1
AC141863|AC141863.6 Medicago truncatula clone mth2-14b10, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  3.3  3
AC010714|AC010714.5 Drosophila melanogaster clone RPCI98-43N11, WORKING DRAFT SEQUENCE, 34 unordered pieces.    44  3.3  1
AQ261015|AQ261015.1 CITBI-E1-2515P5.TR CITBI-E1 Homo sapiens genomic clone 2515P5, genomic survey sequence.    34  9.4  2
AC120833|AC120833.4 Rattus norvegicus clone CH230-91L4, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    42     13  1
dna update 2003. 7.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q4P580) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    84   6e-15
(Q7RZ85) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    72   2e-11
(Q4X136) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    69   2e-10
(Q6CNE0) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    69   2e-10
AK227594_1(AK227594|pid:none) Arabidopsis thaliana mRNA for hypo...    68   4e-10
CP000502_275(CP000502|pid:none) Pichia stipitis CBS 6054 chromos...    67   7e-10
(Q12408) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    66   2e-09
AM920430_43(AM920430|pid:none) Penicillium chrysogenum Wisconsin...    65   3e-09
(Q6BV42) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    64   6e-09
(Q5KIR9) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    64   6e-09
protein update 2009. 3.25
PSORT 

 psg: 0.62  gvh: 0.88  alm: 0.24  top: 0.00  tms: 0.07  mit: 0.40  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.33  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 16.0 %: Golgi
	 16.0 %: nuclear
	 16.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for VSJ452 is cyt
5' end seq. ID VSJ452F
5' end seq. 
>VSJ452F.Seq
ATATCAAATAAAATGAGATTATTATTAGCCCTCTTTTTCGTTCTTGCTTTAGTTTCCCCA
TCTTTCACCCAAGTTTGGTCAAATTGTGGTACTGCTGCCGATAAATTCCAAATTACCAAT
GTAGTATTAGACCCACCAACACCAGTTAAAGGACAAGATATCACAATCAGTGCATCAGGT
ATTCTCGATGAAACCGTCACTGGTGGAAATGTTGCCGTTAAAGTCAAATATGGTTTCATT
ACACTTATCAATGAAAATGTTTCTATTTGCAGTTCTCAAGACCCATTAGCATGCCCAATT
GCTGCTGGTGATTACCAAAAGAATATGACCGAAATGATTCCATCTGATGCTCCATCAGGT
AAATACACTGGTAACGTTGTTATCACCGATCAAAACAATGCTGAAATCGCCTGTATTGAT
GTTGATATTAACTTGTAAACGAATAAAATAAAATAAAATAAAATAAAAACACACCATCGA
TAAATTATTTATAAATTAAAAAAAAAA----------
Length of 5' end seq. 507
3' end seq. ID VSJ452Z
3' end seq. 
>VSJ452Z.Seq
----------ATATCAAATAAAATGAGATTATTATTAGCCCTCTTTTTCGTTCTTGCTTT
AGTTTCCCCATCTTTCACCCAAGTTTGGTCAAATTGTGGTACTGCTGCCGATAAATTCCA
AATTACCAATGTAGTATTAGACCCACCAACACCAGTTAAAGGACAAGATATCACAATCAG
TGCATCAGGTATTCTCGATGAAACCGTCACTGGTGGAAATGTTGCCGTTAAAGTCAAATA
TGGTTTCATTACACTTATCAATGAAAATGTTTCTATTTGCAGTTCTCAAGACCCATTAGC
ATGCCCAATTGCTGCTGGTGATTACCAAAAGAATATGACCGAAATGATTCCATCTGATGC
TCCATCAGGTAAATACACTGGTAACGTTGTTATCACCGATCAAAACAATGCTGAAATCGC
CTGTATTGATGTTGATATTAACTTGTAAACGAATAAAATAAAATAAAATAAAATAAAAAC
ACACCATCGNATAAAT
Length of 3' end seq. 486
Connected seq. ID VSJ452P
Connected seq. 
>VSJ452P.Seq
ATATCAAATAAAATGAGATTATTATTAGCCCTCTTTTTCGTTCTTGCTTTAGTTTCCCCA
TCTTTCACCCAAGTTTGGTCAAATTGTGGTACTGCTGCCGATAAATTCCAAATTACCAAT
GTAGTATTAGACCCACCAACACCAGTTAAAGGACAAGATATCACAATCAGTGCATCAGGT
ATTCTCGATGAAACCGTCACTGGTGGAAATGTTGCCGTTAAAGTCAAATATGGTTTCATT
ACACTTATCAATGAAAATGTTTCTATTTGCAGTTCTCAAGACCCATTAGCATGCCCAATT
GCTGCTGGTGATTACCAAAAGAATATGACCGAAATGATTCCATCTGATGCTCCATCAGGT
AAATACACTGGTAACGTTGTTATCACCGATCAAAACAATGCTGAAATCGCCTGTATTGAT
GTTGATATTAACTTGTAAACGAATAAAATAAAATAAAATAAAATAAAAACACACCATCGA
TAAATTATTTATAAATTAAAAAAAAAA----------ATATCAAATAAAATGAGATTATT
ATTAGCCCTCTTTTTCGTTCTTGCTTTAGTTTCCCCATCTTTCACCCAAGTTTGGTCAAA
TTGTGGTACTGCTGCCGATAAATTCCAAATTACCAATGTAGTATTAGACCCACCAACACC
AGTTAAAGGACAAGATATCACAATCAGTGCATCAGGTATTCTCGATGAAACCGTCACTGG
TGGAAATGTTGCCGTTAAAGTCAAATATGGTTTCATTACACTTATCAATGAAAATGTTTC
TATTTGCAGTTCTCAAGACCCATTAGCATGCCCAATTGCTGCTGGTGATTACCAAAAGAA
TATGACCGAAATGATTCCATCTGATGCTCCATCAGGTAAATACACTGGTAACGTTGTTAT
CACCGATCAAAACAATGCTGAAATCGCCTGTATTGATGTTGATATTAACTTGTAAACGAA
TAAAATAAAATAAAATAAAATAAAAACACACCATCGNATAAAT
Length of connected seq. 993
Full length Seq ID -
Full length Seq. -
Length of full length seq. -