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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ410
Library VS
(Link to library)
Clone ID VSJ410
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15128-1
Original site URL
Representative seq. ID VSJ410P
(Link to Original site)
Representative DNA sequence 
>VSJ410 (VSJ410Q) /CSM/VS/VSJ4-A/VSJ410Q.Seq.d/
ATCAATCTAAAATGGGTCGTGTTAGAACAAAGACAATCAAAAGAGCTTCCAAACTCCTCA
TTGAGAAGCATTACCCAAGACTTACCAATGACTTCGACACTAACAAGAGAACTTGCGACA
AACTCGCCAAGATCCCATCAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTACCCATT
TAATGAGACGTATTGCTAATGGTCCAGTCCGTGGTATTTCTTACAAATTACAAGAAGAAG
AAAGAGAAAAGAGAGATAACTACGTTCCACAAGAATCAGCCATCAAAACCAACGAAGTTA
AAATCGATCGTGATGTTGAAGAAATGCTTAAATCTACTTTGGAATTCCCAACCATCCCAC
AAATCCACGTCGTTGACCAAAAGAGATACAACAAAAACACCAAAAAATCAAACAAATAAA
CGTCAGATTGTTGATTATNTAGAAAAAAAAAAXXXXXXXXXXATCAATCTAAAATGGGTC
GTGTTAGAACAAAGACAATCAAAAGAGCTTCCAAACTCCTCATTGAGAAGCATTACCCAA
GACTTACCAATGACTTCGACACTAACAAGAGAACTTGCGACAAACTCGCCAAGATCCCAT
CAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTACCCATTTAATGAGACGTATTGCTA
ATGGTCCAGTCCGTGGTATTTCTTACAAATTACAAGAAGAAGAAAGAGAAAAGAGAGATA
ACTACGTTCCACAAGAATCAGCCATCAAAACCAACGAAGTTAAAATCGATCGTGATGTTG
AAGAAATGCTTAAATCTACTTTGGAATTCCCAACCATCCCACAAATCCACGTCGTTGACC
AAAAGAGATACAACAAAAACACCAAAAAATCAAACAAATAAACGTCAG
sequence update 2001. 3.22
Translated Amino Acid sequence 
inlkwvvleqrqskelpnsslrsitqdlpmtstltrelatnsprshqnv*etrllvsvpi
**DVLLMVQSVVFLTNYKKKKEKREITTFHKNQPSKPTKLKSIVMLKKCLNLLWNSQPSH
KSTSLTKRDTTKTPKNQTNKRQIVDYXEKK---

---QSKMGRVRTKTIKRASKLLIEKHYPRLTNDFDTNKRTCDKLAKIPSKRLRNKIAGFC
THLMRRIANGPVRGISYKLQEEEREKRDNYVPQESAIKTNEVKIDRDVEEMLKSTLEFPT
IPQIHVVDQKRYNKNTKKSNK*ts
Translated Amino Acid sequence (All Frames) 
Frame A:
inlkwvvleqrqskelpnsslrsitqdlpmtstltrelatnsprshqnv*etrllvsvpi
**DVLLMVQSVVFLTNYKKKKEKREITTFHKNQPSKPTKLKSIVMLKKCLNLLWNSQPSH
KSTSLTKRDTTKTPKNQTNKRQIVDYXEKK---

---inlkwvvleqrqskelpnsslrsitqdlpmtstltrelatnsprshqnv*etrllvs
vpi**dvllmvqsvvfltnykkkkekreittfhknqpskptklksivmlkkclnllwnsq
pshkstsltkrdttktpknqtnkrq

Frame B:
si*ngsc*nkdnqksfqtph*ealpktyq*lrh*qenlrqtrqdpiktfkkqdcwflypf
netyc*wsspwyflqitrrrkrker*lrstrishqnqrs*nrs*c*rna*iyfgipnhpt
nprr*pkeiqqkhqkikqinvrllix*kkk---

---si*ngsc*nkdnqksfqtph*ealpktyq*lrh*qenlrqtrqdpiktfkkqdcwfl
ypfnetyc*wsspwyflqitrrrkrker*lrstrishqnqrs*nrs*c*rna*iyfgipn
hptnprr*pkeiqqkhqkikqinv

Frame C:
qskmgrvrtktikrasklliekhyprltndfdtnkrtcdklakipskrlrnkiagfcthl
mrriangpvrgisyklqeeerekrdnyvpqesaiktnevkidrdveemlkstlefptipq
ihvvdqkrynkntkksnk*tsdc*lxrkkk---

---QSKMGRVRTKTIKRASKLLIEKHYPRLTNDFDTNKRTCDKLAKIPSKRLRNKIAGFC
THLMRRIANGPVRGISYKLQEEEREKRDNYVPQESAIKTNEVKIDRDVEEMLKSTLEFPT
IPQIHVVDQKRYNKNTKKSNK*ts
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ410 (VSJ410Q) /CSM/VS/VSJ4-A/VSJ410Q.Seq.d/                        458   e-128
VSI470 (VSI470Q) /CSM/VS/VSI4-C/VSI470Q.Seq.d/                        458   e-128
VSB711 (VSB711Q) /CSM/VS/VSB7-A/VSB711Q.Seq.d/                        458   e-128
VFG881 (VFG881Q) /CSM/VF/VFG8-D/VFG881Q.Seq.d/                        458   e-128
VFE119 (VFE119Q) /CSM/VF/VFE1-A/VFE119Q.Seq.d/                        458   e-128
SSK109 (SSK109Q) /CSM/SS/SSK1-A/SSK109Q.Seq.d/                        458   e-128
VSD873 (VSD873Q) /CSM/VS/VSD8-D/VSD873Q.Seq.d/                        450   e-125
SLE319 (SLE319Q) /CSM/SL/SLE3-A/SLE319Q.Seq.d/                        450   e-125
VSG216 (VSG216Q) /CSM/VS/VSG2-A/VSG216Q.Seq.d/                        446   e-124
VSI273 (VSI273Q) /CSM/VS/VSI2-D/VSI273Q.Seq.d/                        442   e-123
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L35173|L35173.1 Dictyostelium discoideum ribosomal protein (rps17) gene, complete cds.   432  0.0  5
BQ434132|BQ434132.1 AGENCOURT_7808782 NIH_MGC_92 Homo sapiens cDNA clone IMAGE:6069301 5', mRNA sequence.    50  5e-09  2
BG259081|BG259081.1 602379133F1 NIH_MGC_92 Homo sapiens cDNA clone IMAGE:4509608 5', mRNA sequence.    50  2e-08  2
CD477300|CD477300.1 eca01-12ms1-h08 Eca01 Eschscholzia californica cDNA clone eca01-12ms1-h08 5', mRNA sequence.    42  6e-05  2
CD476897|CD476897.1 eca01-7ms1-c05 Eca01 Eschscholzia californica cDNA clone eca01-7ms1-c05 5', mRNA sequence.    42  6e-05  2
CD477145|CD477145.1 eca01-14ms1-h01 Eca01 Eschscholzia californica cDNA clone eca01-14ms1-h01 5', mRNA sequence.    42  7e-05  2
AY087862|AY087862.1 Arabidopsis thaliana clone 39018 mRNA, complete sequence.    36  2e-04  3
CD477559|CD477559.1 eca01-11ms1-h08 Eca01 Eschscholzia californica cDNA clone eca01-11ms1-h08 5', mRNA sequence.    40  8e-04  2
AA390236|AA390236.1 CpEST.220 pSKIIminusCpIOWAsporoLib2 Cryptosporidium parvum cDNA 5' similar to 40S ribosomal protein S17A, mRNA sequence.    46  0.001  2
H36865|H36865.1 14994 Lambda-PRL2 Arabidopsis thaliana cDNA clone 180B22T7, mRNA sequence.    36  0.001  3
dna update 2003. 7.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU124942_1(EU124942|pid:none) Arenicola marina ribosomal protein...   158   2e-37
EU247177_1(EU247177|pid:none) Lycosa singoriensis clone LSsin973...   158   2e-37
AY857475_1(AY857475|pid:none) Suberites domuncula S17 mRNA, comp...   157   4e-37
DQ066305_1(DQ066305|pid:none) Ixodes scapularis isolate IS-6-12L...   156   7e-37
AF548334_1(AF548334|pid:none) Branchiostoma belcheri ribosomal p...   156   9e-37
(A5PK63) RecName: Full=40S ribosomal protein S17;  &BC142374_1(B...   155   2e-36
BC091562_1(BC091562|pid:none) Danio rerio zgc:114188, mRNA (cDNA...   155   2e-36
AY892179_1(AY892179|pid:none) Synthetic construct Homo sapiens c...   154   3e-36
BT058153_1(BT058153|pid:none) Salmo salar clone Contig981 40S ri...   154   3e-36
(P08708) RecName: Full=40S ribosomal protein S17;  &AB174364_1(A...   154   3e-36
protein update 2009. 3.25
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.27  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for VSJ410 is cyt
5' end seq. ID VSJ410F
5' end seq. 
>VSJ410F.Seq
ATCAATCTAAAATGGGTCGTGTTAGAACAAAGACAATCAAAAGAGCTTCCAAACTCCTCA
TTGAGAAGCATTACCCAAGACTTACCAATGACTTCGACACTAACAAGAGAACTTGCGACA
AACTCGCCAAGATCCCATCAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTACCCATT
TAATGAGACGTATTGCTAATGGTCCAGTCCGTGGTATTTCTTACAAATTACAAGAAGAAG
AAAGAGAAAAGAGAGATAACTACGTTCCACAAGAATCAGCCATCAAAACCAACGAAGTTA
AAATCGATCGTGATGTTGAAGAAATGCTTAAATCTACTTTGGAATTCCCAACCATCCCAC
AAATCCACGTCGTTGACCAAAAGAGATACAACAAAAACACCAAAAAATCAAACAAATAAA
CGTCAGATTGTTGATTATNTAGAAAAAAAAAA----------
Length of 5' end seq. 452
3' end seq. ID VSJ410Z
3' end seq. 
>VSJ410Z.Seq
----------ATCAATCTAAAATGGGTCGTGTTAGAACAAAGACAATCAAAAGAGCTTCC
AAACTCCTCATTGAGAAGCATTACCCAAGACTTACCAATGACTTCGACACTAACAAGAGA
ACTTGCGACAAACTCGCCAAGATCCCATCAAAACGTTTAAGAAACAAGATTGCTGGTTTC
TGTACCCATTTAATGAGACGTATTGCTAATGGTCCAGTCCGTGGTATTTCTTACAAATTA
CAAGAAGAAGAAAGAGAAAAGAGAGATAACTACGTTCCACAAGAATCAGCCATCAAAACC
AACGAAGTTAAAATCGATCGTGATGTTGAAGAAATGCTTAAATCTACTTTGGAATTCCCA
ACCATCCCACAAATCCACGTCGTTGACCAAAAGAGATACAACAAAAACACCAAAAAATCA
AACAAATAAACGTCAG
Length of 3' end seq. 426
Connected seq. ID VSJ410P
Connected seq. 
>VSJ410P.Seq
ATCAATCTAAAATGGGTCGTGTTAGAACAAAGACAATCAAAAGAGCTTCCAAACTCCTCA
TTGAGAAGCATTACCCAAGACTTACCAATGACTTCGACACTAACAAGAGAACTTGCGACA
AACTCGCCAAGATCCCATCAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTACCCATT
TAATGAGACGTATTGCTAATGGTCCAGTCCGTGGTATTTCTTACAAATTACAAGAAGAAG
AAAGAGAAAAGAGAGATAACTACGTTCCACAAGAATCAGCCATCAAAACCAACGAAGTTA
AAATCGATCGTGATGTTGAAGAAATGCTTAAATCTACTTTGGAATTCCCAACCATCCCAC
AAATCCACGTCGTTGACCAAAAGAGATACAACAAAAACACCAAAAAATCAAACAAATAAA
CGTCAGATTGTTGATTATNTAGAAAAAAAAAA----------ATCAATCTAAAATGGGTC
GTGTTAGAACAAAGACAATCAAAAGAGCTTCCAAACTCCTCATTGAGAAGCATTACCCAA
GACTTACCAATGACTTCGACACTAACAAGAGAACTTGCGACAAACTCGCCAAGATCCCAT
CAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTACCCATTTAATGAGACGTATTGCTA
ATGGTCCAGTCCGTGGTATTTCTTACAAATTACAAGAAGAAGAAAGAGAAAAGAGAGATA
ACTACGTTCCACAAGAATCAGCCATCAAAACCAACGAAGTTAAAATCGATCGTGATGTTG
AAGAAATGCTTAAATCTACTTTGGAATTCCCAACCATCCCACAAATCCACGTCGTTGACC
AAAAGAGATACAACAAAAACACCAAAAAATCAAACAAATAAACGTCAG
Length of connected seq. 878
Full length Seq ID -
Full length Seq. -
Length of full length seq. -