VSJ379
Library VS
(Link to library)
Clone ID VSJ379
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15504-1
Original site URL
Representative seq. ID VSJ379P
(Link to Original site)
Representative DNA sequence
>VSJ379 (VSJ379Q) /CSM/VS/VSJ3-D/VSJ379Q.Seq.d/
CAGAATGAGAGTTTTCAAAGATATTGTTGGTTATTCACATGATGAATTATGCTCAGATGC
CTACCCAATGACTGAAATCAACAATGGTTTAATCTATGAAGTCCAAGCTAAAATGGTCAC
CATTGATTTAGATGTTAAAGTTAACACTGGTGCCAACGCTGCTTCTGAAGAAACCGAAGA
AGATGAAGGTGTTGATAATGCTGGTAGCAAACAAGTTATCAACGTTGTTGATGCTATGAG
ACTTGTTGAAACCTCATTCGATAAAAAATCCTACACTGGTTACATTAAAGCTTACATGAA
GGAAGTTCTTGCCAAACTCGCTGACAATAACCCAAGCCGTGTTGACGCCTTCAAAAAGGA
TGCCGCTGATTTTGTCAAATCAGTTCTCGGTAAATTCGACGAATACAAATTCTACACTGG
TGAAAATATGGATGCTGATGGTCATGTCGCTTTAATGTACXXXXXXXXXXCACAGAAAAA
GTTATCACAGAATGAGAGTTTTCAAAGATATTGTTGGTTATTCACATGATGAATTATGCT
CAGATGCCTACCCAATGACTGAAATCAACAATGGTTTAATCTATGAAGTCCAAGCTAAAA
TGGTCACCATTGATTTAGATGTTAAAGTTAACACTGGTGCCAACGCTGCTTCTGAAGAAA
CCGAAGAAGATGAAGGTGTTGATAATGCTGGTAGCAAACAAGTTATCAACGTTGTTGATG
CTATGAGACTTGTTGAAACCTCATTCGATAAAAAATCCTACACTGGTTACATTAAAGCTT
ACATGAAGGAAGTTCTTGCCAAACTCGCTGACAATAACCCAAGCCGTGTTGACGCCTTCA
AAAAGGATGCCGCTGATTTTGTCAAATCAGTTCTCGGTAAATTCGACGAATACAAATTCT
ACACTGGTGAAAATATGGATGCTGATGGTCATGTCGCTTTAATGTACTACAAACCAGGTG
AAGTTGATCCAATCTTTTTATACTTCAAAGACGGTTTAGAATCAGTTAAATATTAAAATA
ATTTTTTCAAAGTGTTATAATAAAGG
sequence update 2001. 3.22
Translated Amino Acid sequence
RMRVFKDIVGYSHDELCSDAYPMTEINNGLIYEVQAKMVTIDLDVKVNTGANAASEETEE
DEGVDNAGSKQVINVVDAMRLVETSFDKKSYTGYIKAYMKEVLAKLADNNPSRVDAFKKD
AADFVKSVLGKFDEYKFYTGENMDADGHVALMY---

---HRKSYHRMRVFKDIVGYSHDELCSDAYPMTEINNGLIYEVQAKMVTIDLDVKVNTGA
NAASEETEEDEGVDNAGSKQVINVVDAMRLVETSFDKKSYTGYIKAYMKEVLAKLADNNP
SRVDAFKKDAADFVKSVLGKFDEYKFYTGENMDADGHVALMYYKPGEVDPIFLYFKDGLE
SVKY*nnffkvl**r


Translated Amino Acid sequence (All Frames)
Frame A:
qnesfqrycwlft**imlrclpnd*nqqwfnl*sps*nghh*frc*s*hwcqrcf*rnrr
r*rc**cw*qtsyqrc*cyetc*nlir*kilhwlh*slhegsscqtr*q*pkpc*rlqkg
cr*fcqissr*irriqilhw*kygc*wscrfnv---

---HRKSYHRMRVFKDIVGYSHDELCSDAYPMTEINNGLIYEVQAKMVTIDLDVKVNTGA
NAASEETEEDEGVDNAGSKQVINVVDAMRLVETSFDKKSYTGYIKAYMKEVLAKLADNNP
SRVDAFKKDAADFVKSVLGKFDEYKFYTGENMDADGHVALMYYKPGEVDPIFLYFKDGLE
SVKY*nnffkvl**r

Frame B:
RMRVFKDIVGYSHDELCSDAYPMTEINNGLIYEVQAKMVTIDLDVKVNTGANAASEETEE
DEGVDNAGSKQVINVVDAMRLVETSFDKKSYTGYIKAYMKEVLAKLADNNPSRVDAFKKD
AADFVKSVLGKFDEYKFYTGENMDADGHVALMY---

---tekvite*efskillvihmmnyaqmptq*lkstmv*smksklkwspli*mlkltlvp
tlllkkpkkmkvlimlvanklstllml*dllkphsiknptlvtlklt*rkflpnsltitq
avltpskrmplilsnqfsvnstntnstlvkiwmlmvmsl*cttnqvkliqsfytsktv*n
qlnikiifskcynk

Frame C:
e*efskillvihmmnyaqmptq*lkstmv*smksklkwspli*mlkltlvptlllkkpkk
mkvlimlvanklstllml*dllkphsiknptlvtlklt*rkflpnsltitqavltpskrm
plilsnqfsvnstntnstlvkiwmlmvmsl*c---

---qkklsqnesfqrycwlft**imlrclpnd*nqqwfnl*sps*nghh*frc*s*hwcq
rcf*rnrrr*rc**cw*qtsyqrc*cyetc*nlir*kilhwlh*slhegsscqtr*q*pk
pc*rlqkgcr*fcqissr*irriqilhw*kygc*wscrfnvlqtr*s*snlfilqrrfri
s*ilk*ffqsviik

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ379 (VSJ379Q) /CSM/VS/VSJ3-D/VSJ379Q.Seq.d/ 2014 0.0
VSG107 (VSG107Q) /CSM/VS/VSG1-A/VSG107Q.Seq.d/ 1142 0.0
VSI532 (VSI532Q) /CSM/VS/VSI5-B/VSI532Q.Seq.d/ 1138 0.0
VSG456 (VSG456Q) /CSM/VS/VSG4-C/VSG456Q.Seq.d/ 1138 0.0
VSD180 (VSD180Q) /CSM/VS/VSD1-D/VSD180Q.Seq.d/ 1138 0.0
VSA456 (VSA456Q) /CSM/VS/VSA4-C/VSA456Q.Seq.d/ 1138 0.0
VSA126 (VSA126Q) /CSM/VS/VSA1-B/VSA126Q.Seq.d/ 1138 0.0
VHJ547 (VHJ547Q) /CSM/VH/VHJ5-B/VHJ547Q.Seq.d/ 1138 0.0
SSG560 (SSG560Q) /CSM/SS/SSG5-C/SSG560Q.Seq.d/ 1138 0.0
SSC805 (SSC805Q) /CSM/SS/SSC8-A/SSC805Q.Seq.d/ 1138 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X70063|X70063.1 C.tentans Sp38-40.A and Sp38-40.B genes. 36 0.44 2
AC125480|AC125480.18 Medicago truncatula clone mth2-8c24, WORKING DRAFT SEQUENCE, 4 unordered pieces. 42 0.70 2
BJ165766|BJ165766.1 Physcomitrella patens subsp. patens cDNA clone:pph5j04, 3' end, single read. 46 0.86 1
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2. 46 0.86 1
BQ385705|BQ385705.1 NISC_mn13h03.x1 NICHD XGC Ov1 Xenopus laevis cDNA clone IMAGE:5073628 3', mRNA sequence. 46 0.86 1
AC136979|AC136979.1 Mus musculus clone RP23-12E14, LOW-PASS SEQUENCE SAMPLING. 36 2.9 2
AL162759|AL162759.4 Human chromosome 14 DNA sequence *** IN PROGRESS *** BAC R-785G15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human). 44 3.4 1
AC118842|AC118842.4 Rattus norvegicus clone CH230-245G5, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 44 3.4 1
CC335562|CC335562.1 OGUAI69TH ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0393K17, DNA sequence. 44 3.4 1
AC121644|AC121644.3 Rattus norvegicus clone CH230-97C6, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 44 3.4 1
dna update 2003. 7.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q10344) RecName: Full=Translationally-controlled tumor protein ... 150 9e-35
(Q4PF30) RecName: Full=Translationally-controlled tumor protein ... 144 6e-33
(Q6C4G1) RecName: Full=Translationally-controlled tumor protein ... 132 2e-29
DQ324044_1(DQ324044|pid:none) Cyprinus carpio translationally-co... 131 3e-29
(Q4IJT5) RecName: Full=Translationally-controlled tumor protein ... 131 4e-29
(Q9DGK4) RecName: Full=Translationally-controlled tumor protein;... 131 4e-29
(Q5A860) RecName: Full=Translationally-controlled tumor protein ... 130 5e-29
FM992695_83(FM992695|pid:none) Candida dubliniensis CD36 chromos... 130 5e-29
CP000500_406(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 130 5e-29
AB372535_1(AB372535|pid:none) Cadophora gregata f. sp. adzukicol... 130 7e-29
protein update 2009. 3.25
PSORT

psg: 0.61 gvh: 0.39 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
20.0 %: mitochondrial

>> prediction for VSJ379 is cyt

5' end seq. ID VSJ379F
5' end seq.
>VSJ379F.Seq
CAGAATGAGAGTTTTCAAAGATATTGTTGGTTATTCACATGATGAATTATGCTCAGATGC
CTACCCAATGACTGAAATCAACAATGGTTTAATCTATGAAGTCCAAGCTAAAATGGTCAC
CATTGATTTAGATGTTAAAGTTAACACTGGTGCCAACGCTGCTTCTGAAGAAACCGAAGA
AGATGAAGGTGTTGATAATGCTGGTAGCAAACAAGTTATCAACGTTGTTGATGCTATGAG
ACTTGTTGAAACCTCATTCGATAAAAAATCCTACACTGGTTACATTAAAGCTTACATGAA
GGAAGTTCTTGCCAAACTCGCTGACAATAACCCAAGCCGTGTTGACGCCTTCAAAAAGGA
TGCCGCTGATTTTGTCAAATCAGTTCTCGGTAAATTCGACGAATACAAATTCTACACTGG
TGAAAATATGGATGCTGATGGTCATGTCGCTTTAATGTAC----------
Length of 5' end seq. 460
3' end seq. ID VSJ379Z
3' end seq.
>VSJ379Z.Seq
----------CACAGAAAAAGTTATCACAGAATGAGAGTTTTCAAAGATATTGTTGGTTA
TTCACATGATGAATTATGCTCAGATGCCTACCCAATGACTGAAATCAACAATGGTTTAAT
CTATGAAGTCCAAGCTAAAATGGTCACCATTGATTTAGATGTTAAAGTTAACACTGGTGC
CAACGCTGCTTCTGAAGAAACCGAAGAAGATGAAGGTGTTGATAATGCTGGTAGCAAACA
AGTTATCAACGTTGTTGATGCTATGAGACTTGTTGAAACCTCATTCGATAAAAAATCCTA
CACTGGTTACATTAAAGCTTACATGAAGGAAGTTCTTGCCAAACTCGCTGACAATAACCC
AAGCCGTGTTGACGCCTTCAAAAAGGATGCCGCTGATTTTGTCAAATCAGTTCTCGGTAA
ATTCGACGAATACAAATTCTACACTGGTGAAAATATGGATGCTGATGGTCATGTCGCTTT
AATGTACTACAAACCAGGTGAAGTTGATCCAATCTTTTTATACTTCAAAGACGGTTTAGA
ATCAGTTAAATATTAAAATAATTTTTTCAAAGTGTTATAATAAAGG
Length of 3' end seq. 576
Connected seq. ID VSJ379P
Connected seq.
>VSJ379P.Seq
CAGAATGAGAGTTTTCAAAGATATTGTTGGTTATTCACATGATGAATTATGCTCAGATGC
CTACCCAATGACTGAAATCAACAATGGTTTAATCTATGAAGTCCAAGCTAAAATGGTCAC
CATTGATTTAGATGTTAAAGTTAACACTGGTGCCAACGCTGCTTCTGAAGAAACCGAAGA
AGATGAAGGTGTTGATAATGCTGGTAGCAAACAAGTTATCAACGTTGTTGATGCTATGAG
ACTTGTTGAAACCTCATTCGATAAAAAATCCTACACTGGTTACATTAAAGCTTACATGAA
GGAAGTTCTTGCCAAACTCGCTGACAATAACCCAAGCCGTGTTGACGCCTTCAAAAAGGA
TGCCGCTGATTTTGTCAAATCAGTTCTCGGTAAATTCGACGAATACAAATTCTACACTGG
TGAAAATATGGATGCTGATGGTCATGTCGCTTTAATGTAC----------CACAGAAAAA
GTTATCACAGAATGAGAGTTTTCAAAGATATTGTTGGTTATTCACATGATGAATTATGCT
CAGATGCCTACCCAATGACTGAAATCAACAATGGTTTAATCTATGAAGTCCAAGCTAAAA
TGGTCACCATTGATTTAGATGTTAAAGTTAACACTGGTGCCAACGCTGCTTCTGAAGAAA
CCGAAGAAGATGAAGGTGTTGATAATGCTGGTAGCAAACAAGTTATCAACGTTGTTGATG
CTATGAGACTTGTTGAAACCTCATTCGATAAAAAATCCTACACTGGTTACATTAAAGCTT
ACATGAAGGAAGTTCTTGCCAAACTCGCTGACAATAACCCAAGCCGTGTTGACGCCTTCA
AAAAGGATGCCGCTGATTTTGTCAAATCAGTTCTCGGTAAATTCGACGAATACAAATTCT
ACACTGGTGAAAATATGGATGCTGATGGTCATGTCGCTTTAATGTACTACAAACCAGGTG
AAGTTGATCCAATCTTTTTATACTTCAAAGACGGTTTAGAATCAGTTAAATATTAAAATA
ATTTTTTCAAAGTGTTATAATAAAGG
Length of connected seq. 1036
Full length Seq ID -
Full length Seq. -
Length of full length seq. -