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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ363
Library VS
(Link to library)
Clone ID VSJ363
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U02778-1
Original site URL
Representative seq. ID VSJ363P
(Link to Original site)
Representative DNA sequence 
>VSJ363 (VSJ363Q) /CSM/VS/VSJ3-C/VSJ363Q.Seq.d/
ATTAATTTTACAATCACTCCTTTATTATTAGTTACTCATCAACATTTTTCAATTTCTTTA
AGTTTAATAGATTATATATTAATTTTATTATGGAGTACATTTTTTACAATTGAAGCTGTT
GCAGATGGACAAAAAACACTATTTTTAGGTAAACCAGAGAATAAAGGTAAATTTATTAAC
CAAGGATTATGGAAGAGACTTTGTCGTCATCCAAATTATTTCTCTGAAATAATGATGCAT
TGGATAATTTATTTCATTTGTTTTAGAGGATTGGATTCTTATTGGTATAAGTTTATTTCT
TTGATTTCTCCTTTATTTATAAGTTTTTTAATGTTAAAAATTTCAACTCCAATGATGGAA
AAAATATCAGATGAAAAATTTTCTGGAAATCCTCAATACCAAGAATATAAAAAATCAACA
TATAAAATTATACCATTCATAAATTAAAAATTAACTACTACTAGTTTTTAAAATTAAAAA
AAAAAXXXXXXXXXXATTAATTTTACAATCACTCCTTTATTATTAGTTACTCATCAACAT
TTTTCAATTTCTTTAAGTTTAATAGATTATATATTAATTTTATTATGGAGTACATTTTTT
ACAATTGAAGCTGTTGCAGATGGACAAAAAACACTATTTTTAGGTAAACCAGAGAATAAA
GGTAAATTTATTAACCAAGGATTATGGAAGAGACTTTGTCGTCATCCAAATTATTTCTCT
GAAATAATGATGCATTGGATAATTTATTTCATTTGTTTTAGAGGATTGGATTCTTATTGG
TATAAGTTTATTTCTTTGATTTCTCCTTTATTTATAAGTTTTTTAATGTTAAAAATTTCA
ACTCCAATGATGGAAAAAATATCAGATGAAAAATTTT
sequence update 2001. 3.22
Translated Amino Acid sequence 
lilqsllyy*llinifqfl*v**iiy*fyygvhflqlkllqmdkkhyf*vnqrikvnllt
kdygrdfvviqiislk**cig*fisfvledwiligislfl*fllyl*vf*c*kfqlq*wk
kyqmknfleilntkniknqhiklyhs*ikn*LLLVFKIKKK---

---INFTITPLLLVTHQHFSISLSLIDYILILLWSTFFTIEAVADGQKTLFLGKPENKGK
FINQGLWKRLCRHPNYFSEIMMHWIIYFICFRGLDSYWYKFISLISPLFISFLMLKISTP
MMEKISDEKF
Translated Amino Acid sequence (All Frames) 
Frame A:
inftitplllvthqhfsislslidyilillwstfftieavadgqktlflgkpenkgkfin
qglwkrlcrhpnyfseimmhwiiyficfrgldsywykfislisplfisflmlkistpmme
kisdekfsgnpqyqeykkstykiipfin*kltttsf*n*kk---

---INFTITPLLLVTHQHFSISLSLIDYILILLWSTFFTIEAVADGQKTLFLGKPENKGK
FINQGLWKRLCRHPNYFSEIMMHWIIYFICFRGLDSYWYKFISLISPLFISFLMLKISTP
MMEKISDEKF

Frame B:
lilqsllyy*llinifqfl*v**iiy*fyygvhflqlkllqmdkkhyf*vnqrikvnllt
kdygrdfvviqiislk**cig*fisfvledwiligislfl*fllyl*vf*c*kfqlq*wk
kyqmknfleilntkniknqhiklyhs*ikn*LLLVFKIKKK---

---lilqsllyy*llinifqfl*v**iiy*fyygvhflqlkllqmdkkhyf*vnqrikvn
lltkdygrdfvviqiislk**cig*fisfvledwiligislfl*fllyl*vf*c*kfqlq
*wkkyqmknf

Frame C:
*fynhsfiisysstffnffkfnrlyinfimeyifyn*sccrwtkntifr*tre*r*iy*p
rimeetlsssklfl*nndaldnlfhlf*rigfllv*vyffdfsfiykffnvknfnsndgk
nir*kifwkssipri*kini*nytihklkinyy*flklkkk---

---*fynhsfiisysstffnffkfnrlyinfimeyifyn*sccrwtkntifr*tre*r*i
y*primeetlsssklfl*nndaldnlfhlf*rigfllv*vyffdfsfiykffnvknfnsn
dgknir*ki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ363 (VSJ363Q) /CSM/VS/VSJ3-C/VSJ363Q.Seq.d/                        942   0.0
SSH320 (SSH320Q) /CSM/SS/SSH3-A/SSH320Q.Seq.d/                        942   0.0
SSH319 (SSH319Q) /CSM/SS/SSH3-A/SSH319Q.Seq.d/                        940   0.0
VSD768 (VSD768Q) /CSM/VS/VSD7-C/VSD768Q.Seq.d/                        801   0.0
AFI480 (AFI480Q) /CSM/AF/AFI4-D/AFI480Q.Seq.d/                        676   0.0
VSH283 (VSH283Q) /CSM/VS/VSH2-D/VSH283Q.Seq.d/                         38   0.22
VFL855 (VFL855Q) /CSM/VF/VFL8-C/VFL855Q.Seq.d/                         38   0.22
VHB766 (VHB766Q) /CSM/VH/VHB7-C/VHB766Q.Seq.d/                         36   0.87
SHI568 (SHI568Q) /CSM/SH/SHI5-C/SHI568Q.Seq.d/                         36   0.87
SFL469 (SFL469Q) /CSM/SF/SFL4-C/SFL469Q.Seq.d/                         36   0.87
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    34  1e-06  13
AX344569|AX344569.1 Sequence 20 from Patent WO0200932.            34  1e-06  15
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    36  1e-05  16
AE001407|AE001407.1 Plasmodium falciparum chromosome 2, section 44 of 73 of the complete sequence.    40  7e-05  6
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          36  8e-05  13
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    32  1e-04  14
AJ294725|AJ294725.1 Astasia longa complete chloroplast genome.    32  1e-04  8
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    32  2e-04  13
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    38  2e-04  13
AL034558|AL034558.3 Plasmodium falciparum MAL3P2.                 36  3e-04  10
dna update 2003. 7.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001341_1046(CP001341|pid:none) Arthrobacter chlorophenolicus A...    92   3e-17
CR954203_307(CR954203|pid:none) Ostreococcus tauri strain OTTH05...    86   2e-15
AY085147_1(AY085147|pid:none) Arabidopsis thaliana clone 13335 m...    84   4e-15
AM406671_1283(AM406671|pid:none) Lactococcus lactis subsp. cremo...    84   6e-15
AE017180_2311(AE017180|pid:none) Geobacter sulfurreducens PCA, c...    84   6e-15
AY054255_1(AY054255|pid:none) Arabidopsis thaliana At1g73650/F25...    84   6e-15
AK316743_1(AK316743|pid:none) Arabidopsis thaliana AT1G73650 mRN...    84   6e-15
AE014296_1571(AE014296|pid:none) Drosophila melanogaster chromos...    83   1e-14
AC034107_18(AC034107|pid:none) Sequence of BAC T10F20 from Arabi...    82   2e-14
AC087797_21(AC087797|pid:none) Oryza sativa chromosome 3 BAC OSJ...    82   2e-14
protein update 2009. 3.25
PSORT 

 psg: 0.93  gvh: 0.65  alm: 0.28  top: 0.43  tms: 0.07  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: extracellular, including cell wall
	 32.0 %: plasma membrane
	 24.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for VSJ363 is exc
5' end seq. ID VSJ363F
5' end seq. 
>VSJ363F.Seq
ATTAATTTTACAATCACTCCTTTATTATTAGTTACTCATCAACATTTTTCAATTTCTTTA
AGTTTAATAGATTATATATTAATTTTATTATGGAGTACATTTTTTACAATTGAAGCTGTT
GCAGATGGACAAAAAACACTATTTTTAGGTAAACCAGAGAATAAAGGTAAATTTATTAAC
CAAGGATTATGGAAGAGACTTTGTCGTCATCCAAATTATTTCTCTGAAATAATGATGCAT
TGGATAATTTATTTCATTTGTTTTAGAGGATTGGATTCTTATTGGTATAAGTTTATTTCT
TTGATTTCTCCTTTATTTATAAGTTTTTTAATGTTAAAAATTTCAACTCCAATGATGGAA
AAAATATCAGATGAAAAATTTTCTGGAAATCCTCAATACCAAGAATATAAAAAATCAACA
TATAAAATTATACCATTCATAAATTAAAAATTAACTACTACTAGTTTTTAAAATTAAAAA
AAAAA----------
Length of 5' end seq. 485
3' end seq. ID VSJ363Z
3' end seq. 
>VSJ363Z.Seq
----------ATTAATTTTACAATCACTCCTTTATTATTAGTTACTCATCAACATTTTTC
AATTTCTTTAAGTTTAATAGATTATATATTAATTTTATTATGGAGTACATTTTTTACAAT
TGAAGCTGTTGCAGATGGACAAAAAACACTATTTTTAGGTAAACCAGAGAATAAAGGTAA
ATTTATTAACCAAGGATTATGGAAGAGACTTTGTCGTCATCCAAATTATTTCTCTGAAAT
AATGATGCATTGGATAATTTATTTCATTTGTTTTAGAGGATTGGATTCTTATTGGTATAA
GTTTATTTCTTTGATTTCTCCTTTATTTATAAGTTTTTTAATGTTAAAAATTTCAACTCC
AATGATGGAAAAAATATCAGATGAAAAATTTT
Length of 3' end seq. 382
Connected seq. ID VSJ363P
Connected seq. 
>VSJ363P.Seq
ATTAATTTTACAATCACTCCTTTATTATTAGTTACTCATCAACATTTTTCAATTTCTTTA
AGTTTAATAGATTATATATTAATTTTATTATGGAGTACATTTTTTACAATTGAAGCTGTT
GCAGATGGACAAAAAACACTATTTTTAGGTAAACCAGAGAATAAAGGTAAATTTATTAAC
CAAGGATTATGGAAGAGACTTTGTCGTCATCCAAATTATTTCTCTGAAATAATGATGCAT
TGGATAATTTATTTCATTTGTTTTAGAGGATTGGATTCTTATTGGTATAAGTTTATTTCT
TTGATTTCTCCTTTATTTATAAGTTTTTTAATGTTAAAAATTTCAACTCCAATGATGGAA
AAAATATCAGATGAAAAATTTTCTGGAAATCCTCAATACCAAGAATATAAAAAATCAACA
TATAAAATTATACCATTCATAAATTAAAAATTAACTACTACTAGTTTTTAAAATTAAAAA
AAAAA----------ATTAATTTTACAATCACTCCTTTATTATTAGTTACTCATCAACAT
TTTTCAATTTCTTTAAGTTTAATAGATTATATATTAATTTTATTATGGAGTACATTTTTT
ACAATTGAAGCTGTTGCAGATGGACAAAAAACACTATTTTTAGGTAAACCAGAGAATAAA
GGTAAATTTATTAACCAAGGATTATGGAAGAGACTTTGTCGTCATCCAAATTATTTCTCT
GAAATAATGATGCATTGGATAATTTATTTCATTTGTTTTAGAGGATTGGATTCTTATTGG
TATAAGTTTATTTCTTTGATTTCTCCTTTATTTATAAGTTTTTTAATGTTAAAAATTTCA
ACTCCAATGATGGAAAAAATATCAGATGAAAAATTTT
Length of connected seq. 867
Full length Seq ID -
Full length Seq. -
Length of full length seq. -