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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ351
Library VS
(Link to library)
Clone ID VSJ351
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSJ351F
(Link to Original site)
Representative DNA sequence 
>VSJ351 (VSJ351Q) /CSM/VS/VSJ3-C/VSJ351Q.Seq.d/
AAAAAAATAAATAATAAATAAATTTAAAAAGTATCATTAATTAATAATTTCAAAAGTGTA
AAAAAAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
kkinnk*i*KVSLINNFKSVKK---
Translated Amino Acid sequence (All Frames) 
Frame A:
kkinnk*i*KVSLINNFKSVKK---


Frame B:
kk*iinkfkkyh*liiskv*kk---


Frame C:
knk**inlksiin**fqkckkk---
Homology vs CSM-cDNA 

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

VSJ351 (VSJ351Q) /CSM/VS/VSJ3-C/VSJ351Q.Seq.d/   1185  0.0
SSF434 (SSF434Q) /CSM/SS/SSF4-B/SSF434Q.Seq.d/   1136  0.0
VSF339 (VSF339Q) /CSM/VS/VSF3-B/VSF339Q.Seq.d/   1039  0.0
SSI583 (SSI583Q) /CSM/SS/SSI5-D/SSI583Q.Seq.d/    783  0.0
SSM846 (SSM846Q) /CSM/SS/SSM8-B/SSM846Q.Seq.d/     38  0.052
SLI530 (SLI530Q) /CSM/SL/SLI5-B/SLI530Q.Seq.d/     36  0.21
VSG314 (VSG314Q) /CSM/VS/VSG3-A/VSG314Q.Seq.d/     36  0.21
VSD127 (VSD127Q) /CSM/VS/VSD1-B/VSD127Q.Seq.d/     32  3.2
VSF288 (VSF288Q) /CSM/VS/VSF2-D/VSF288Q.Seq.d/     32  3.2
VSD153 (VSD153Q) /CSM/VS/VSD1-C/VSD153Q.Seq.d/     32  3.2
own update 2000.12.16
Homology vs DNA 

 ***** No hits found ******

Lambda     K      H
   -1.00    -1.00    -1.00

[blastall] WARNING:  [000.000]  SetUpBlastSearch failed.
[blastall] ERROR:  [000.000]  BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check query sequence

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.







Dictyostelium discoideum cDNA Project Home
dna update 2003. 7.18
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.312    0.126    0.308

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 53,324,153
protein update 2009. 3.25
PSORT -
5' end seq. ID VSJ351F
5' end seq. 
>VSJ351F.Seq
AAAAAAATAAATAATAAATAAATTTAAAAAGTATCATTAATTAATAATTTCAAAAGTGTA
AAAAAAAAA----------
Length of 5' end seq. 69
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -