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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ282
Library VS
(Link to library)
Clone ID VSJ282
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15503-1
Original site URL
Representative seq. ID VSJ282P
(Link to Original site)
Representative DNA sequence 
>VSJ282 (VSJ282Q) /CSM/VS/VSJ2-D/VSJ282Q.Seq.d/
CCACGCCGTCCGACAAACTACTAGNAACACCAGAAGAAGAAGAACAAATTAGAAAAGAAA
ATGAATGGTGTGAAGATAAAGGTGGAAACTAAATTAATCTTTAGTATTTAACTTTTTTTT
TAAAAAAAAAAXXXXXXXXXXACAAACTACTAGAACACCAGAAGAAGAAGAACAAATTAG
AAAAGAAAATGAATGGTGTGAAGATAAAGGNGAAACTAAAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
havrqttxntrrrrtn*krk*mv*r*rwkln*SLVFNFFFKKK---

---QTTRTPEEEEQIRKENEWCEDKGETK
Translated Amino Acid sequence (All Frames) 
Frame A:
prrptny*xhqkkknklekkmngvkikvetklifsi*lff*kk---

---tny*ntrrrrtn*krk*mv*r*rxn*

Frame B:
havrqttxntrrrrtn*krk*mv*r*rwkln*SLVFNFFFKKK---

---QTTRTPEEEEQIRKENEWCEDKGETK

Frame C:
tpsdkllxtpeeeeqirkenewcedkggn*inl*yltfflkkk---

---kllehqkkknklekkmngvkikxkln
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ282 (VSJ282Q) /CSM/VS/VSJ2-D/VSJ282Q.Seq.d/                        216   1e-55
VSK110 (VSK110Q) /CSM/VS/VSK1-A/VSK110Q.Seq.d/                        165   3e-40
VSI413 (VSI413Q) /CSM/VS/VSI4-A/VSI413Q.Seq.d/                        165   3e-40
VSH570 (VSH570Q) /CSM/VS/VSH5-C/VSH570Q.Seq.d/                        165   3e-40
SSK557 (SSK557Q) /CSM/SS/SSK5-C/SSK557Q.Seq.d/                        165   3e-40
SSI765 (SSI765Q) /CSM/SS/SSI7-C/SSI765Q.Seq.d/                        165   3e-40
SSB270 (SSB270Q) /CSM/SS/SSB2-C/SSB270Q.Seq.d/                        165   3e-40
FC-AW05 (FC-AW05Q) /CSM/FC/FC-AW/FC-AW05Q.Seq.d/                      165   3e-40
VSI351 (VSI351Q) /CSM/VS/VSI3-C/VSI351Q.Seq.d/                        153   1e-36
VSJ401 (VSJ401Q) /CSM/VS/VSJ4-A/VSJ401Q.Seq.d/                        147   8e-35
own update 2001.11.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.   165  1e-37  3
U73686|U73686.1 Dictyostelium discoideum cytosolic glycoprotein FP21 (fpa2) gene, complete cds.   165  3e-37  2
U18063|U18063.1 Dictyostelium discoideum glycoprotein FP21 mRNA, complete cds.   119  1e-23  1
U73685|U73685.1 Dictyostelium discoideum cytosolic glycoprotein FP21 (fpa1) gene, complete cds.   119  1e-23  1
CB073377|CB073377.1 taa32b02.y1 Hydra EST -II Hydra magnipapillata cDNA 5' similar to SW:SKP1_HUMAN P34991 CYCLIN A/CDK2-ASSOCIATED PROTEIN P19 ;, mRNA sequence.    84  8e-13  1
CB272183|CB272183.1 taa32b02.x2 Hydra EST -II Hydra magnipapillata cDNA 3' similar to SW:SKP1_HUMAN P34991 CYCLIN A/CDK2-ASSOCIATED PROTEIN P19 ;, mRNA sequence.    84  8e-13  1
BU775483|BU775483.1 SJEBMG12 SJE Schistosoma japonicum cDNA, mRNA sequence.    62  6e-08  2
BU721088|BU721088.1 SJM2BJE10 SJM Schistosoma japonicum cDNA, mRNA sequence.    62  8e-08  2
BU720647|BU720647.1 SJM2BEA02 SJM Schistosoma japonicum cDNA, mRNA sequence.    62  8e-08  2
BU793570|BU793570.1 SJF2BRB04 SJF Schistosoma japonicum cDNA, mRNA sequence.    62  8e-08  2
dna update 2003. 7.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FB831795_1(FB831795|pid:none) Sequence 51068 from Patent WO20080...    41   0.011
AE013599_1455(AE013599|pid:none) Drosophila melanogaster chromos...    41   0.014
AY050559_1(AY050559|pid:none) Physarum polycephalum Skp1 (Skp1) ...    40   0.018
AY223000_1(AY223000|pid:none) Schistosoma japonicum SJCHGC06138 ...    40   0.024
AF440505_1(AF440505|pid:none) Caenorhabditis elegans SKR-1 (skr-...    40   0.024
AY223398_1(AY223398|pid:none) Schistosoma japonicum clone ZZZ324...    40   0.024
AE017341_798(AE017341|pid:none) Cryptococcus neoformans var. neo...    40   0.031
(Q9Y709) RecName: Full=Suppressor of kinetochore protein 1; AltN...    40   0.031
AF132729_1(AF132729|pid:none) Arabidopsis thaliana SKP1-like pro...    39   0.054
FB831863_1(FB831863|pid:none) Sequence 51136 from Patent WO20080...    39   0.070
protein update 2009. 3.25
PSORT 

 psg: 0.45  gvh: 0.22  alm: 0.68  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.04
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for VSJ282 is nuc
5' end seq. ID VSJ282F
5' end seq. 
>VSJ282F.Seq
CCACGCCGTCCGACAAACTACTAGNAACACCAGAAGAAGAAGAACAAATTAGAAAAGAAA
ATGAATGGTGTGAAGATAAAGGTGGAAACTAAATTAATCTTTAGTATTTAACTTTTTTTT
TAAAAAAAAAA----------
Length of 5' end seq. 131
3' end seq. ID VSJ282Z
3' end seq. 
>VSJ282Z.Seq
----------ACAAACTACTAGAACACCAGAAGAAGAAGAACAAATTAGAAAAGAAAATG
AATGGTGTGAAGATAAAGGNGAAACTAAAT
Length of 3' end seq. 80
Connected seq. ID VSJ282P
Connected seq. 
>VSJ282P.Seq
CCACGCCGTCCGACAAACTACTAGNAACACCAGAAGAAGAAGAACAAATTAGAAAAGAAA
ATGAATGGTGTGAAGATAAAGGTGGAAACTAAATTAATCTTTAGTATTTAACTTTTTTTT
TAAAAAAAAAA----------ACAAACTACTAGAACACCAGAAGAAGAAGAACAAATTAG
AAAAGAAAATGAATGGTGTGAAGATAAAGGNGAAACTAAAT
Length of connected seq. 211
Full length Seq ID -
Full length Seq. -
Length of full length seq. -