VSJ275
Library VS
(Link to library)
Clone ID VSJ275
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16169-1
Original site URL
Representative seq. ID VSJ275P
(Link to Original site)
Representative DNA sequence
>VSJ275 (VSJ275Q) /CSM/VS/VSJ2-D/VSJ275Q.Seq.d/
GGTGAATTAGAATGTGGTGTTTGTGAAGTCATTGCTCAACAATGCTCAAACTACATCAAA
GCCAACAAAACCGAATCTGAAATCGTTGGTCTCCTCGATCAATTCTGTTCAACTCTTTCA
ATCTTTGAAAGTGCTTGTGATACCATCGTTGCCAGCTCTGCTCCAAAGATCATCAACTTA
CTCTTACAAAACCAAAGTGCAACTGTAGTTTGTACCGAAATTGGCTTCTGTGGTAACTCT
TCATCAGGTAATAACAACCATTCATCATCTGAAGAATCTTCATCATCTTCCCAACCATCA
TCATCTTCTGAATCATCAGAATCAAGTTACTCTGGTTCAATGACTGGTGCTTCATCTGGT
TCAGCTTCAGGTTCAGGTTCAGGTACATCTGGAAACATGAAAATTTACATCAAATAAATT
TAATAATTAAATAATTTAAGTTNTNAAAAAAAAAXXXXXXXXXXCCCACGCGTNCCGGGT
GAATTAGAATGTGGTGTTTGTGAAGTCATTGCTCAACAATGCTCAAACTACATCAAAGCC
AACAAAACCGAATCTGAAATCGTTGGTCTCCTCGATCAATTCTGTTCAACTCTTTCAATC
TTTGAAAGTGCTTGTGATACCATCGTTGCCAGCTCTGCTCCAAAGATCATCAACTTACTC
TTACAAAACCAAAGTGCAACTGTAGTTTGTACCGAAATTGGCTTCTGTGGTAACTCTTCA
TCAGGTAATAACAACCATTCATCATCTGAAGAATCTTCATCATCTTCCCAACCATCATCA
TCTTCTGAATCATCAGAATCAAGTTACTCTGGTTCAATGACTGGTGCTTCATCTGGTTCA
GCTTCAGGTTCAGGTTCAGGTACATCGGAAACATGAAAATTTACATCAAATAAATTTAAT
AATTAAATAATTTAAGGTT
sequence update 2001. 3.22
Translated Amino Acid sequence
gelecgvceviaqqcsnyikankteseivglldqfcstlsifesacdtivassapkiinl
llqnqsatvvcteigfcgnsssgnnnhssseesssssqpssssessessysgsmtgassg
sasgsgsgtsgnmkiyik*i**LNNLSXXKK---

---PRVPGELECGVCEVIAQQCSNYIKANKTESEIVGLLDQFCSTLSIFESACDTIVASS
APKIINLLLQNQSATVVCTEIGFCGNSSSGNNNHSSSEESSSSSQPSSSSESSESSYSGS
MTGASSGSASGSGSGTSET*kftsnkfnn*ii*g


Translated Amino Acid sequence (All Frames)
Frame A:
gelecgvceviaqqcsnyikankteseivglldqfcstlsifesacdtivassapkiinl
llqnqsatvvcteigfcgnsssgnnnhssseesssssqpssssessessysgsmtgassg
sasgsgsgtsgnmkiyik*i**LNNLSXXKK---

---ptrxg*irmwcl*shcstmlklhqsqqnri*nrwsprsilfnsfnl*kcl*yhrcql
cskdhqltltkpkcncslyrnwllw*lfir**qpfii*rifiifptiiif*iirikllwf
ndwcfiwfsfrfrfryignmkiyik*i**lnnlr

Frame B:
vn*nvvfvksllnnaqttskptkpnlkslvssinsvqlfqslkvlvipslpallqrssty
syktkvql*fvpklasvvtlhqvittihhlknlhhlpnhhhllnhqnqvtlvq*lvlhlv
qlqvqvqvhlet*kftsnkfnn*ii*vxkkk---

---PRVPGELECGVCEVIAQQCSNYIKANKTESEIVGLLDQFCSTLSIFESACDTIVASS
APKIINLLLQNQSATVVCTEIGFCGNSSSGNNNHSSSEESSSSSQPSSSSESSESSYSGS
MTGASSGSASGSGSGTSET*kftsnkfnn*ii*g

Frame C:
*irmwcl*shcstmlklhqsqqnri*nrwsprsilfnsfnl*kcl*yhrcqlcskdhqlt
ltkpkcncslyrnwllw*lfir**qpfii*rifiifptiiif*iirikllwfndwcfiwf
sfrfrfryiwkhenlhqinliik*fkxxkk---

---haxrvn*nvvfvksllnnaqttskptkpnlkslvssinsvqlfqslkvlvipslpal
lqrsstysyktkvql*fvpklasvvtlhqvittihhlknlhhlpnhhhllnhqnqvtlvq
*lvlhlvqlqvqvqvhrkhenlhqinliik*fkv

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ275 (VSJ275Q) /CSM/VS/VSJ2-D/VSJ275Q.Seq.d/ 896 0.0
VFL608 (VFL608Q) /CSM/VF/VFL6-A/VFL608Q.Seq.d/ 858 0.0
VSG132 (VSG132Q) /CSM/VS/VSG1-B/VSG132Q.Seq.d/ 856 0.0
VSC449 (VSC449Q) /CSM/VS/VSC4-C/VSC449Q.Seq.d/ 856 0.0
SLF118 (SLF118Q) /CSM/SL/SLF1-A/SLF118Q.Seq.d/ 856 0.0
SLE371 (SLE371Q) /CSM/SL/SLE3-C/SLE371Q.Seq.d/ 856 0.0
FCL-AB23 (FCL-AB23Q) /CSM/FCL/FCL-AB/FCL-AB23Q.Seq.d/ 856 0.0
VSE128 (VSE128Q) /CSM/VS/VSE1-B/VSE128Q.Seq.d/ 848 0.0
VSI312 (VSI312Q) /CSM/VS/VSI3-A/VSI312Q.Seq.d/ 839 0.0
VSD810 (VSD810Q) /CSM/VS/VSD8-A/VSD810Q.Seq.d/ 829 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY223858|AY223858.1 Trypanosoma evansi clone ShTat1.3 procyclin EP2 (EP2) gene, complete cds. 52 1e-09 2
BX558403|BX558403.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse38d05_q1c. 52 1e-09 2
BX564787|BX564787.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse73f11_q1c. 52 2e-09 2
X04814|X04814.1 Trypanosoma brucei mRNA for procyclic form specific polypeptide with dipeptide repeat. 52 2e-09 2
AF353631|AF353631.1 Trypanosoma brucei brucei surface protein EP3-3 procyclin precursor (EP3-3) gene, EP3-3-GPEET/PAG3-1 allele, complete cds. 52 2e-09 2
AF353632|AF353632.1 Trypanosoma brucei brucei surface protein EP3-3 procyclin precursor (EP3-3) gene, EP3-3-GPEET/PAG3-2 allele, complete cds. 52 2e-09 2
X52584|X52584.1 T. brucei PARP-A locus for PARP-A alpha and beta proteins. 52 9e-09 2
M33129|M33129.1 T.brucei procyclic acidic repetitive protein A.alpha and A.beta (parp-A.alpha and parp-A.beta) genes, complete cds. 52 9e-09 2
BX558757|BX558757.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse3e12_q1c. 46 6e-08 2
BX553008|BX553008.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse126g07_q1c. 46 8e-08 2
dna update 2003. 7.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF175768_1(AF175768|pid:none) Dictyostelium discoideum SAPLIP C ... 55 4e-06
BT045327_1(BT045327|pid:none) Salmo salar clone ssal-rgf-518-210... 54 5e-06
BT058972_1(BT058972|pid:none) Salmo salar clone ssal-rgf-517-167... 54 5e-06
(P20097) RecName: Full=Saposin-C; AltName: Full=Co-beta-glucosid... 53 2e-05
AC115608_3(AC115608|pid:none) Dictyostelium discoideum chromosom... 52 2e-05
U66367_1(U66367|pid:none) Dictyostelium discoideum SapA (sapA) m... 52 3e-05
AB170870_1(AB170870|pid:none) Macaca fascicularis brain cDNA clo... 52 3e-05
AB169527_1(AB169527|pid:none) Macaca fascicularis brain cDNA, cl... 52 3e-05
BT045905_1(BT045905|pid:none) Salmo salar clone ssal-rgf-536-147... 50 8e-05
AB209776_1(AB209776|pid:none) Homo sapiens mRNA for prosaposin v... 50 8e-05
protein update 2009. 3.25
PSORT

psg: 0.68 gvh: 0.52 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.03
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi

>> prediction for VSJ275 is cyt

5' end seq. ID VSJ275F
5' end seq.
>VSJ275F.Seq
GGTGAATTAGAATGTGGTGTTTGTGAAGTCATTGCTCAACAATGCTCAAACTACATCAAA
GCCAACAAAACCGAATCTGAAATCGTTGGTCTCCTCGATCAATTCTGTTCAACTCTTTCA
ATCTTTGAAAGTGCTTGTGATACCATCGTTGCCAGCTCTGCTCCAAAGATCATCAACTTA
CTCTTACAAAACCAAAGTGCAACTGTAGTTTGTACCGAAATTGGCTTCTGTGGTAACTCT
TCATCAGGTAATAACAACCATTCATCATCTGAAGAATCTTCATCATCTTCCCAACCATCA
TCATCTTCTGAATCATCAGAATCAAGTTACTCTGGTTCAATGACTGGTGCTTCATCTGGT
TCAGCTTCAGGTTCAGGTTCAGGTACATCTGGAAACATGAAAATTTACATCAAATAAATT
TAATAATTAAATAATTTAAGTTNTNAAAAAAAAA----------
Length of 5' end seq. 454
3' end seq. ID VSJ275Z
3' end seq.
>VSJ275Z.Seq
----------CCCACGCGTNCCGGGTGAATTAGAATGTGGTGTTTGTGAAGTCATTGCTC
AACAATGCTCAAACTACATCAAAGCCAACAAAACCGAATCTGAAATCGTTGGTCTCCTCG
ATCAATTCTGTTCAACTCTTTCAATCTTTGAAAGTGCTTGTGATACCATCGTTGCCAGCT
CTGCTCCAAAGATCATCAACTTACTCTTACAAAACCAAAGTGCAACTGTAGTTTGTACCG
AAATTGGCTTCTGTGGTAACTCTTCATCAGGTAATAACAACCATTCATCATCTGAAGAAT
CTTCATCATCTTCCCAACCATCATCATCTTCTGAATCATCAGAATCAAGTTACTCTGGTT
CAATGACTGGTGCTTCATCTGGTTCAGCTTCAGGTTCAGGTTCAGGTACATCGGAAACAT
GAAAATTTACATCAAATAAATTTAATAATTAAATAATTTAAGGTT
Length of 3' end seq. 455
Connected seq. ID VSJ275P
Connected seq.
>VSJ275P.Seq
GGTGAATTAGAATGTGGTGTTTGTGAAGTCATTGCTCAACAATGCTCAAACTACATCAAA
GCCAACAAAACCGAATCTGAAATCGTTGGTCTCCTCGATCAATTCTGTTCAACTCTTTCA
ATCTTTGAAAGTGCTTGTGATACCATCGTTGCCAGCTCTGCTCCAAAGATCATCAACTTA
CTCTTACAAAACCAAAGTGCAACTGTAGTTTGTACCGAAATTGGCTTCTGTGGTAACTCT
TCATCAGGTAATAACAACCATTCATCATCTGAAGAATCTTCATCATCTTCCCAACCATCA
TCATCTTCTGAATCATCAGAATCAAGTTACTCTGGTTCAATGACTGGTGCTTCATCTGGT
TCAGCTTCAGGTTCAGGTTCAGGTACATCTGGAAACATGAAAATTTACATCAAATAAATT
TAATAATTAAATAATTTAAGTTNTNAAAAAAAAA----------CCCACGCGTNCCGGGT
GAATTAGAATGTGGTGTTTGTGAAGTCATTGCTCAACAATGCTCAAACTACATCAAAGCC
AACAAAACCGAATCTGAAATCGTTGGTCTCCTCGATCAATTCTGTTCAACTCTTTCAATC
TTTGAAAGTGCTTGTGATACCATCGTTGCCAGCTCTGCTCCAAAGATCATCAACTTACTC
TTACAAAACCAAAGTGCAACTGTAGTTTGTACCGAAATTGGCTTCTGTGGTAACTCTTCA
TCAGGTAATAACAACCATTCATCATCTGAAGAATCTTCATCATCTTCCCAACCATCATCA
TCTTCTGAATCATCAGAATCAAGTTACTCTGGTTCAATGACTGGTGCTTCATCTGGTTCA
GCTTCAGGTTCAGGTTCAGGTACATCGGAAACATGAAAATTTACATCAAATAAATTTAAT
AATTAAATAATTTAAGGTT
Length of connected seq. 909
Full length Seq ID -
Full length Seq. -
Length of full length seq. -