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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ244
Library VS
(Link to library)
Clone ID VSJ244
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13740-1
Original site URL
Representative seq. ID VSJ244P
(Link to Original site)
Representative DNA sequence 
>VSJ244 (VSJ244Q) /CSM/VS/VSJ2-B/VSJ244Q.Seq.d/
CAAACAAAATATAAATTAGAAAAATAAACAAATAGAATAATGTGTCAACCAGTAGTAGCT
ACATTTAAGAAATCAACTGTACATATATATAGAGACTGTATTAGATTAGCAAGATATATA
GGTGATATGAATGGGCATGCCAAAAATATGTCCAAACAAGTTCGTATAGTATTTAGAACA
AATCAATTTGAAATTGATCCAAAGAAAATAGAAGAACAAAAAACAGATGCTGTCCGTTTT
TTAACAAATTTTATGCAACATGAAGCAGAAAGAATGGCAAGAAGTCAAAAGAAAGCAGCA
TCTGAATCAACCCAAACTCCAAGAACAAGATCAACTCTTGATTAAAAAAAAAAXXXXXXX
XXXAATTCATAGTCGACCAATAGATCAAACAAAATATAAATTAGAAAAATAAACAAATAG
AATAATGTGTCAACCAGTAGTAGCTACATTTAAGAAATCAACTGTACATATATATAGAGA
CTGTATTAGATTAGCAAGATATATAGGTGATATGAATGGGCATGCCAAAAATATGTCCAA
ACAAGTTCGTATAGTATTTAGAACAAATCAATTTGAAATTGATCCAAAGAAAATAGAAGA
ACAAAAAACAGATGCTGTCCGTNNTNNAACAAANNT
sequence update 2001. 3.22
Translated Amino Acid sequence 
kqnin*knkqie*cvnq**lhlrnqlyiyietvld*qdi*vi*mgmpkicpnkfv*yleq
inlkliqrk*knkkqmlsvf*QILCNMKQKEWQEVKRKQHLNQPKLQEQDQLLIKKK---

---IHSRPIDQTKYKLEK*tnrimcqpvvatfkkstvhiyrdcirlaryigdmnghaknm
skqvrivfrtnqfeidpkkieeqktdavrxxtx
Translated Amino Acid sequence (All Frames) 
Frame A:
qtkyklek*tnrimcqpvvatfkkstvhiyrdcirlaryigdmnghaknmskqvrivfrt
nqfeidpkkieeqktdavrfltnfmqheaermarsqkkaasestqtprtrstld*kk---

---ns*stnrsnki*irkink*nnvstsssyi*einctyi*rly*iskiyr*yewacqky
vqtssysi*nksi*n*skenrrtknrccpxxnkx

Frame B:
kqnin*knkqie*cvnq**lhlrnqlyiyietvld*qdi*vi*mgmpkicpnkfv*yleq
inlkliqrk*knkkqmlsvf*QILCNMKQKEWQEVKRKQHLNQPKLQEQDQLLIKKK---

---IHSRPIDQTKYKLEK*tnrimcqpvvatfkkstvhiyrdcirlaryigdmnghaknm
skqvrivfrtnqfeidpkkieeqktdavrxxtx

Frame C:
nki*irkink*nnvstsssyi*einctyi*rly*iskiyr*yewacqkyvqtssysi*nk
si*n*skenrrtknrccpffnkfyat*srkngkkskessi*inpnsknkins*lkkk---

---fivdq*ikqnin*knkqie*cvnq**lhlrnqlyiyietvld*qdi*vi*mgmpkic
pnkfv*yleqinlkliqrk*knkkqmlsvxxqx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ244 (VSJ244Q) /CSM/VS/VSJ2-B/VSJ244Q.Seq.d/                        680   0.0
SSF356 (SSF356Q) /CSM/SS/SSF3-C/SSF356Q.Seq.d/                        680   0.0
SSJ759 (SSJ759Q) /CSM/SS/SSJ7-C/SSJ759Q.Seq.d/                        674   0.0
VHM416 (VHM416Q) /CSM/VH/VHM4-A/VHM416Q.Seq.d/                        636   0.0
AHJ741 (AHJ741Q) /CSM/AH/AHJ7-B/AHJ741Q.Seq.d/                         38   0.16
VSG740 (VSG740Q) /CSM/VS/VSG7-B/VSG740Q.Seq.d/                         36   0.63
VFG732 (VFG732Q) /CSM/VF/VFG7-B/VFG732Q.Seq.d/                         36   0.63
SSC180 (SSC180Q) /CSM/SS/SSC1-D/SSC180Q.Seq.d/                         36   0.63
CFF335 (CFF335Q) /CSM/CF/CFF3-B/CFF335Q.Seq.d/                         36   0.63
VSF394 (VSF394Q) /CSM/VS/VSF3-D/VSF394Q.Seq.d/                         34   2.5
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115607|AC115607.2 Dictyostelium discoideum chromosome 2 map 4559693-4624405 strain AX4, complete sequence.   222  e-162  5
AC143897|AC143897.1 Macaca mulatta clone CH250-268B8, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44  1e-04  2
AX766168|AX766168.1 Sequence 5 from Patent WO03016905.            40  8e-04  2
M55547|M55547.1 Transposon Tn1331 (from K.pneumoniae) tnpR, aac, aadA, oxa9, and TEM-bla genes.    40  9e-04  2
AJ009780|AJ009780.1 Synthetic construct Acetobacter europaeus-Acetobacter intermedius- Escherichia coli shuttle plasmid vector pJT2.    40  0.001  2
U36451|U36451.1 E. coli/yeast shuttle vector pBD-GAL4, complete sequence.    40  0.001  2
AF252266|AF252266.1 Expression vector pDUAL-GC, complete sequence.    40  0.001  2
AX468870|AX468870.1 Sequence 14 from Patent WO0227007.            40  0.001  2
U36450|U36450.1 E. coli/yeast shuttle vector pAD-GAL4, complete sequence.    40  0.002  2
AC124819|AC124819.2 Mus musculus clone RP24-390P16, LOW-PASS SEQUENCE SAMPLING.    40  0.002  3
dna update 2003. 7.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115607_15(AC115607|pid:none) Dictyostelium discoideum chromoso...   202   5e-51
EF145717_1(EF145717|pid:none) Populus trichocarpa clone WS0112_O...    60   4e-08
AY059890_1(AY059890|pid:none) Arabidopsis thaliana Unknown prote...    50   4e-05
AB022216_14(AB022216|pid:none) Arabidopsis thaliana genomic DNA,...    40   0.053
AC117081_12(AC117081|pid:none) Dictyostelium discoideum chromoso...    34   2.9
AM920435_699(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    34   3.8
CP001037_1107(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    33   5.0
protein update 2009. 3.25
PSORT 

 psg: 0.32  gvh: 0.16  alm: 0.73  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for VSJ244 is nuc
5' end seq. ID VSJ244F
5' end seq. 
>VSJ244F.Seq
CAAACAAAATATAAATTAGAAAAATAAACAAATAGAATAATGTGTCAACCAGTAGTAGCT
ACATTTAAGAAATCAACTGTACATATATATAGAGACTGTATTAGATTAGCAAGATATATA
GGTGATATGAATGGGCATGCCAAAAATATGTCCAAACAAGTTCGTATAGTATTTAGAACA
AATCAATTTGAAATTGATCCAAAGAAAATAGAAGAACAAAAAACAGATGCTGTCCGTTTT
TTAACAAATTTTATGCAACATGAAGCAGAAAGAATGGCAAGAAGTCAAAAGAAAGCAGCA
TCTGAATCAACCCAAACTCCAAGAACAAGATCAACTCTTGATTAAAAAAAAAA-------
---
Length of 5' end seq. 353
3' end seq. ID VSJ244Z
3' end seq. 
>VSJ244Z.Seq
----------AATTCATAGTCGACCAATAGATCAAACAAAATATAAATTAGAAAAATAAA
CAAATAGAATAATGTGTCAACCAGTAGTAGCTACATTTAAGAAATCAACTGTACATATAT
ATAGAGACTGTATTAGATTAGCAAGATATATAGGTGATATGAATGGGCATGCCAAAAATA
TGTCCAAACAAGTTCGTATAGTATTTAGAACAAATCAATTTGAAATTGATCCAAAGAAAA
TAGAAGAACAAAAAACAGATGCTGTCCGTNNTNNAACAAANNT
Length of 3' end seq. 273
Connected seq. ID VSJ244P
Connected seq. 
>VSJ244P.Seq
CAAACAAAATATAAATTAGAAAAATAAACAAATAGAATAATGTGTCAACCAGTAGTAGCT
ACATTTAAGAAATCAACTGTACATATATATAGAGACTGTATTAGATTAGCAAGATATATA
GGTGATATGAATGGGCATGCCAAAAATATGTCCAAACAAGTTCGTATAGTATTTAGAACA
AATCAATTTGAAATTGATCCAAAGAAAATAGAAGAACAAAAAACAGATGCTGTCCGTTTT
TTAACAAATTTTATGCAACATGAAGCAGAAAGAATGGCAAGAAGTCAAAAGAAAGCAGCA
TCTGAATCAACCCAAACTCCAAGAACAAGATCAACTCTTGATTAAAAAAAAAA-------
---AATTCATAGTCGACCAATAGATCAAACAAAATATAAATTAGAAAAATAAACAAATAG
AATAATGTGTCAACCAGTAGTAGCTACATTTAAGAAATCAACTGTACATATATATAGAGA
CTGTATTAGATTAGCAAGATATATAGGTGATATGAATGGGCATGCCAAAAATATGTCCAA
ACAAGTTCGTATAGTATTTAGAACAAATCAATTTGAAATTGATCCAAAGAAAATAGAAGA
ACAAAAAACAGATGCTGTCCGTNNTNNAACAAANNT
Length of connected seq. 626
Full length Seq ID -
Full length Seq. -
Length of full length seq. -