>VSJ241 (VSJ241Q) /CSM/VS/VSJ2-B/VSJ241Q.Seq.d/
AAAAATAGTAATAGTTAATTATGACAACAACATATTTTGGACCTTGGTTAATCAGACAAT
CAGAAATATTTTTTACTACAGAATTATCTTTTGCATTGGTTAATTTGAAACCTGTACTTC
CAGGTCACGTATTAGTATGTCCAAAAAGAATTGTACCAAGAGTTAAAGATTTAACAAAAG
AAGAATTCACTGATCTTTGGTTATCCGCTCAAAGAATTTCATCTGTTGTAGAAGAACATT
TCAATGGTGATGGAATAACATTTGCAATTCAGGATGGAAAGAATGCAGGTCAAACTGTCG
AACATGTACATATTCATATTATTCCAAGAAAGAAATTCGATTTTGAAAATAACGATCAAA
TTTATAACGAGATTGAAAAAGAGAGAGAACCAAGATCATACGAAGAAATGGAAAAAGAGT
CAAGTGAATTACGTCCACTTTTTGAAGAGAACAAAAACAAGACTTTTTAATAATAAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAXXXXXXXXX
XACAANACTTNTTAATAATAAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATCACAATAAAAAAAAAGA

kivivnydnnifwtlvnqtirnifyyriifcig*fetctsrsrismskknctks*rfnkr
rih*slvirsknficcrrtfqw*wnnicnsgwkecrsncrtctysyyskkeirf*k*rsn
l*rd*krertkiirrngkrvk*itstf*REQKQDFLIINNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNN---

---QXXLIINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNHNKKK

Frame A:
knsns*l*qqhildlg*sdnqkyfllqnyllhwli*nlyfqvty*yvqkelyqelki*qk
knslifgyplkefhll*knismvme*hlqfrmermqvklsnmyifilfqernsilkitik
fitrlkkrenqdhtkkwkksqvnyvhflkrtktrlfnnk*********************
*****************---

---txlxnnk****************************************sq*kkr

Frame B:
kivivnydnnifwtlvnqtirnifyyriifcig*fetctsrsrismskknctks*rfnkr
rih*slvirsknficcrrtfqw*wnnicnsgwkecrsncrtctysyyskkeirf*k*rsn
l*rd*krertkiirrngkrvk*itstf*REQKQDFLIINNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNN---

---QXXLIINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNHNKKK

Frame C:
k***limtttyfgpwlirqseiffttelsfalvnlkpvlpghvlvcpkrivprvkdltke
eftdlwlsaqrissvveehfngdgitfaiqdgknagqtvehvhihiiprkkfdfenndqi
yneiekereprsyeemekesselrplfeenknktf***iiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiii---

---xtx***iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiitikkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ241 (VSJ241Q) /CSM/VS/VSJ2-B/VSJ241Q.Seq.d/                        926   0.0
VSJ225 (VSJ225Q) /CSM/VS/VSJ2-B/VSJ225Q.Seq.d/                         38   0.19
CHP454 (CHP454Q) /CSM/CH/CHP4-C/CHP454Q.Seq.d/                         38   0.19
VSI703 (VSI703Q) /CSM/VS/VSI7-A/VSI703Q.Seq.d/                         36   0.75
VSA246 (VSA246Q) /CSM/VS/VSA2-B/VSA246Q.Seq.d/                         36   0.75
VFI133 (VFI133Q) /CSM/VF/VFI1-B/VFI133Q.Seq.d/                         36   0.75
VFG131 (VFG131Q) /CSM/VF/VFG1-B/VFG131Q.Seq.d/                         36   0.75
SSM138 (SSM138Q) /CSM/SS/SSM1-B/SSM138Q.Seq.d/                         36   0.75
SSD535 (SSD535Q) /CSM/SS/SSD5-B/SSD535Q.Seq.d/                         36   0.75
CHS350 (CHS350Q) /CSM/CH/CHS3-C/CHS350Q.Seq.d/                         36   0.75

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.   541  0.0  3
AE010634|AE010634.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 176 of 197 of the complete genome.    46  0.60  2
AC091021|AC091021.8 Homo sapiens chromosome 18 clone RP11-786F14 map 18, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    46  0.62  1
AP002410|AP002410.1 Homo sapiens genomic DNA, chromosome 18q12 clone:RP11-786F14, WORKING DRAFT SEQUENCE, 45 unordered pieces.    46  0.62  1
AQ569716|AQ569716.1 HS_5333_B2_C12_T7A RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=909 Col=24 Row=F, genomic survey sequence.    46  0.62  1
AC021788|AC021788.5 Homo sapiens chromosome 11 clone RP11-215H5 map 11, WORKING DRAFT SEQUENCE, 31 unordered pieces.    46  2.2  4
L23478|L23478.1 Chlamydia muridarum initiation factor 1 (IF1-a), L36 (L36), and S13 (S13) genes, complete cds.    44  2.5  1
BH134115|BH134115.1 ENTOY42TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44  2.5  1
AC072055|AC072055.3 Homo sapiens chromosome 7 clone RP11-48C19, WORKING DRAFT SEQUENCE, 4 unordered pieces.    44  2.5  1
BE595936|BE595936.1 PI1_50_B10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence.    44  2.5  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86KK2) RecName: Full=Bis(5'-adenosyl)-triphosphatase;         ...   306   3e-82
EF083171_1(EF083171|pid:none) Picea sitchensis clone WS02726_I02...   178   1e-43
BC059526_1(BC059526|pid:none) Danio rerio fragile histidine tria...   168   2e-40
AB019228_11(AB019228|pid:none) Arabidopsis thaliana genomic DNA,...   160   4e-38
BT040680_1(BT040680|pid:none) Zea mays full-length cDNA clone ZM...   158   2e-37
EF147706_1(EF147706|pid:none) Populus trichocarpa clone WS0124_H...   157   4e-37
AY389749_1(AY389749|pid:none) Hyacinthus orientalis diadenosine ...   157   4e-37
BC087368_1(BC087368|pid:none) Xenopus laevis hypothetical LOC495...   154   2e-36
AY144442_26(AY144442|pid:none) Sorghum bicolor BAC 95A23/98N8.1 ...   154   4e-36
AY893008_1(AY893008|pid:none) Synthetic construct Homo sapiens c...   153   5e-36

 psg: 0.75  gvh: -0.13  alm: 0.88  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VSJ241 is nuc

>VSJ241F.Seq
AAAAATAGTAATAGTTAATTATGACAACAACATATTTTGGACCTTGGTTAATCAGACAAT
CAGAAATATTTTTTACTACAGAATTATCTTTTGCATTGGTTAATTTGAAACCTGTACTTC
CAGGTCACGTATTAGTATGTCCAAAAAGAATTGTACCAAGAGTTAAAGATTTAACAAAAG
AAGAATTCACTGATCTTTGGTTATCCGCTCAAAGAATTTCATCTGTTGTAGAAGAACATT
TCAATGGTGATGGAATAACATTTGCAATTCAGGATGGAAAGAATGCAGGTCAAACTGTCG
AACATGTACATATTCATATTATTCCAAGAAAGAAATTCGATTTTGAAAATAACGATCAAA
TTTATAACGAGATTGAAAAAGAGAGAGAACCAAGATCATACGAAGAAATGGAAAAAGAGT
CAAGTGAATTACGTCCACTTTTTGAAGAGAACAAAAACAAGACTTTTTAATAATAAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA---------
-

>VSJ241Z.Seq
----------ACAANACTTNTTAATAATAAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATCACAATAAAAAAAAAGA

>VSJ241P.Seq
AAAAATAGTAATAGTTAATTATGACAACAACATATTTTGGACCTTGGTTAATCAGACAAT
CAGAAATATTTTTTACTACAGAATTATCTTTTGCATTGGTTAATTTGAAACCTGTACTTC
CAGGTCACGTATTAGTATGTCCAAAAAGAATTGTACCAAGAGTTAAAGATTTAACAAAAG
AAGAATTCACTGATCTTTGGTTATCCGCTCAAAGAATTTCATCTGTTGTAGAAGAACATT
TCAATGGTGATGGAATAACATTTGCAATTCAGGATGGAAAGAATGCAGGTCAAACTGTCG
AACATGTACATATTCATATTATTCCAAGAAAGAAATTCGATTTTGAAAATAACGATCAAA
TTTATAACGAGATTGAAAAAGAGAGAGAACCAAGATCATACGAAGAAATGGAAAAAGAGT
CAAGTGAATTACGTCCACTTTTTGAAGAGAACAAAAACAAGACTTTTTAATAATAAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA---------
-ACAANACTTNTTAATAATAAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATCACAATAAAAAAAAAGA