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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ236
Library VS
(Link to library)
Clone ID VSJ236
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16039-1
Original site URL
Representative seq. ID VSJ236P
(Link to Original site)
Representative DNA sequence 
>VSJ236 (VSJ236Q) /CSM/VS/VSJ2-B/VSJ236Q.Seq.d/
AGAATGTCGTCAATCAACCCAAGTTTATATAATGACAATGGTGTGTATTGTTCAAAAGTA
ATTGTCACAAAAGCAATAAAAATTAGAGATTTAGATCAAATACCACAAACTGTACTTGCC
TTGGCTGCTACCAATAACGGTGCCAATTATGATTACGCCTCACCTAATTACATAACAAAT
GCCAGAAAAAGATTTAAAGCAAGACTCAATAGAAACCCAATATGGTACCCAAAAATGGGT
GACACCGCTGCTATTTTTTTCGCAAGATCTGATCAAGCAGGTTGGGATATCAGAGCTGAA
GTTGACGAGGCCATATTATATACACAAAAACAATATCCCCATATTGATATTAACTATGCA
GTTTTAACACCAGTTAATACTCACGATTTAGTTGACATGAATCTCATCGCCCAGTTATTC
GCTGAGGATGATGCAGCAGCAGCAGCAGCAGCAAACCAACCAAACCAACCAAATCAAGGA
CAATAATAAATTTATGTAGGTTCCATCCGAATTTTATTTACTTAATTTCTGTATTATTTA
TTTATTTTTTTTTTTAAAAAAAAAAXXXXXXXXXXCAAAAGCAATAAAAATTANAGATTT
AGATCAAATACCACAAACTGNACTTGCCTTGGCTGCTACCAATAACGGTGCCAATTATGA
TTACGCCTCACCTAATTACATAACAAATGCCAGAAAAAGATTTAAAGCAAGACTCNATAG
AAACCCAATATGGNACCCAAAAATGGGTGACNCCGCTGCTATTTTTTTNGCAAGATCTGA
TCAAGCAGGTTGGGATATCAGAGCTGAAGTTGACGAGGCCATATTATATACNCAAAAACA
ATATCCCCATATTGATATTAACTATGCAGTTTTAACNCCAGTTAATACTCNCGATTTAGT
TGACATGAATCTCATCGCCCAGTTATTCGCTGAGGATGAANCANCANCANCANCANC
sequence update 2001. 3.22
Translated Amino Acid sequence 
ecrqstqvyimtmvcivqk*lsqkq*klei*ikyhklylpwllpitvpimitphlit*qm
pekdlkqdsietqygtqkwvtpllffsqdlikqvgiselkltrpyyihknnipililtmq
f*hqlilti*lt*isspsyslrmmqqqqqqqtnqtnqikdnnkfm*VPSEFYLLNFCIIY
LFFFLKKK---

---KAIKIXDLDQIPQTXLALAATNNGANYDYASPNYITNARKRFKARLXRNPIWXPKMG
DXAAIFXARSDQAGWDIRAEVDEAILYTQKQYPHIDINYAVLTPVNTXDLVDMNLIAQLF
AEDEXXXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
rmssinpslyndngvycskvivtkaikirdldqipqtvlalaatnnganydyaspnyitn
arkrfkarlnrnpiwypkmgdtaaiffarsdqagwdiraevdeailytqkqyphidinya
vltpvnthdlvdmnliaqlfaeddaaaaaaanqpnqpnqgq**iyvgsirilft*flyyl
fifffkkk---

---qkq*klxi*ikyhklxlpwllpitvpimitphlit*qmpekdlkqdsietqygtqkw
vtpllffxqdlikqvgiselkltrpyyixknnipililtmqf*xqlilxi*lt*isspsy
slrmxxxxxx

Frame B:
ecrqstqvyimtmvcivqk*lsqkq*klei*ikyhklylpwllpitvpimitphlit*qm
pekdlkqdsietqygtqkwvtpllffsqdlikqvgiselkltrpyyihknnipililtmq
f*hqlilti*lt*isspsyslrmmqqqqqqqtnqtnqikdnnkfm*VPSEFYLLNFCIIY
LFFFLKKK---

---ksnknxrfrsnttnxtclgcyq*rcql*lrlt*lhnkcqkki*sktx*kpnmxpkng
*xrcyffxki*ssrlgyqs*s*rghiiyxktispy*y*lcsfnxs*ysrfs*heshrpvi
r*g*xxxxxx

Frame C:
nvvnqpkfi**qwcvlfksnchksnkn*rfrsnttnctclgcyq*rcql*lrlt*lhnkc
qkki*sktq*kpnmvpkng*hrcyffrki*ssrlgyqs*s*rghiiytktispy*y*lcs
fnts*ysrfs*heshrpvir*g*csssssskptkptksrtiinlcrfhpnfiylisvlfi
yfff*kk---

---KAIKIXDLDQIPQTXLALAATNNGANYDYASPNYITNARKRFKARLXRNPIWXPKMG
DXAAIFXARSDQAGWDIRAEVDEAILYTQKQYPHIDINYAVLTPVNTXDLVDMNLIAQLF
AEDEXXXXX
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ236 (VSJ236Q) /CSM/VS/VSJ2-B/VSJ236Q.Seq.d/                        815   0.0
VHD475 (VHD475Q) /CSM/VH/VHD4-D/VHD475Q.Seq.d/                        815   0.0
VFL382 (VFL382Q) /CSM/VF/VFL3-D/VFL382Q.Seq.d/                        815   0.0
VSF231 (VSF231Q) /CSM/VS/VSF2-B/VSF231Q.Seq.d/                        809   0.0
VSI854 (VSI854Q) /CSM/VS/VSI8-C/VSI854Q.Seq.d/                        799   0.0
VSF768 (VSF768Q) /CSM/VS/VSF7-C/VSF768Q.Seq.d/                        799   0.0
VSD643 (VSD643Q) /CSM/VS/VSD6-B/VSD643Q.Seq.d/                        799   0.0
FCL-AB20 (FCL-AB20Q) /CSM/FCL/FCL-AB/FCL-AB20Q.Seq.d/                 799   0.0
FC-AJ12 (FC-AJ12Q) /CSM/FC/FC-AJ/FC-AJ12Q.Seq.d/                      799   0.0
VSD644 (VSD644Q) /CSM/VS/VSD6-B/VSD644Q.Seq.d/                        795   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X15380|X15380.1 Dictyostelium discoideum V4b gene.               502  0.0  3
X15381|X15381.1 Dictyostelium discoideum V4a gene.               502  e-138  1
AC118395|AC118395.4 Rattus norvegicus clone CH230-111M14, WORKING DRAFT SEQUENCE, 1 ordered piece.    48  0.20  1
AC134271|AC134271.2 Rattus norvegicus clone CH230-444F13, WORKING DRAFT SEQUENCE, 3 unordered pieces.    48  0.20  1
AC128129|AC128129.3 Rattus norvegicus clone CH230-267K5, WORKING DRAFT SEQUENCE, 1 ordered piece.    48  0.20  1
AC022425|AC022425.6 Homo sapiens chromosome 1 clone CTD-2302K4, complete sequence.    40  1.1  3
CC159955|CC159955.1 ig05h07.g1 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic clone ig05h07, DNA sequence.    34  2.3  2
CC159954|CC159954.1 ig05h07.b1 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic clone ig05h07, DNA sequence.    34  2.3  2
AC108132|AC108132.2 Homo sapiens chromosome 16 clone RP11-404F5, complete sequence.    44  3.1  1
AC023573|AC023573.2 Homo sapiens chromosome 2 clone RP11-413E7 map 2, WORKING DRAFT SEQUENCE, 39 unordered pieces.    44  3.1  1
dna update 2003. 7.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P14330) RecName: Full=Vegetative-specific protein V4;  &S35649(...   293   7e-78
X15381_1(X15381|pid:none) Dictyostelium discoideum V4a gene.          183   8e-45
protein update 2009. 3.25
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.32  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VSJ236 is cyt
5' end seq. ID VSJ236F
5' end seq. 
>VSJ236F.Seq
AGAATGTCGTCAATCAACCCAAGTTTATATAATGACAATGGTGTGTATTGTTCAAAAGTA
ATTGTCACAAAAGCAATAAAAATTAGAGATTTAGATCAAATACCACAAACTGTACTTGCC
TTGGCTGCTACCAATAACGGTGCCAATTATGATTACGCCTCACCTAATTACATAACAAAT
GCCAGAAAAAGATTTAAAGCAAGACTCAATAGAAACCCAATATGGTACCCAAAAATGGGT
GACACCGCTGCTATTTTTTTCGCAAGATCTGATCAAGCAGGTTGGGATATCAGAGCTGAA
GTTGACGAGGCCATATTATATACACAAAAACAATATCCCCATATTGATATTAACTATGCA
GTTTTAACACCAGTTAATACTCACGATTTAGTTGACATGAATCTCATCGCCCAGTTATTC
GCTGAGGATGATGCAGCAGCAGCAGCAGCAGCAAACCAACCAAACCAACCAAATCAAGGA
CAATAATAAATTTATGTAGGTTCCATCCGAATTTTATTTACTTAATTTCTGTATTATTTA
TTTATTTTTTTTTTTAAAAAAAAAA----------
Length of 5' end seq. 565
3' end seq. ID VSJ236Z
3' end seq. 
>VSJ236Z.Seq
----------CAAAAGCAATAAAAATTANAGATTTAGATCAAATACCACAAACTGNACTT
GCCTTGGCTGCTACCAATAACGGTGCCAATTATGATTACGCCTCACCTAATTACATAACA
AATGCCAGAAAAAGATTTAAAGCAAGACTCNATAGAAACCCAATATGGNACCCAAAAATG
GGTGACNCCGCTGCTATTTTTTTNGCAAGATCTGATCAAGCAGGTTGGGATATCAGAGCT
GAAGTTGACGAGGCCATATTATATACNCAAAAACAATATCCCCATATTGATATTAACTAT
GCAGTTTTAACNCCAGTTAATACTCNCGATTTAGTTGACATGAATCTCATCGCCCAGTTA
TTCGCTGAGGATGAANCANCANCANCANCANC
Length of 3' end seq. 382
Connected seq. ID VSJ236P
Connected seq. 
>VSJ236P.Seq
AGAATGTCGTCAATCAACCCAAGTTTATATAATGACAATGGTGTGTATTGTTCAAAAGTA
ATTGTCACAAAAGCAATAAAAATTAGAGATTTAGATCAAATACCACAAACTGTACTTGCC
TTGGCTGCTACCAATAACGGTGCCAATTATGATTACGCCTCACCTAATTACATAACAAAT
GCCAGAAAAAGATTTAAAGCAAGACTCAATAGAAACCCAATATGGTACCCAAAAATGGGT
GACACCGCTGCTATTTTTTTCGCAAGATCTGATCAAGCAGGTTGGGATATCAGAGCTGAA
GTTGACGAGGCCATATTATATACACAAAAACAATATCCCCATATTGATATTAACTATGCA
GTTTTAACACCAGTTAATACTCACGATTTAGTTGACATGAATCTCATCGCCCAGTTATTC
GCTGAGGATGATGCAGCAGCAGCAGCAGCAGCAAACCAACCAAACCAACCAAATCAAGGA
CAATAATAAATTTATGTAGGTTCCATCCGAATTTTATTTACTTAATTTCTGTATTATTTA
TTTATTTTTTTTTTTAAAAAAAAAA----------CAAAAGCAATAAAAATTANAGATTT
AGATCAAATACCACAAACTGNACTTGCCTTGGCTGCTACCAATAACGGTGCCAATTATGA
TTACGCCTCACCTAATTACATAACAAATGCCAGAAAAAGATTTAAAGCAAGACTCNATAG
AAACCCAATATGGNACCCAAAAATGGGTGACNCCGCTGCTATTTTTTTNGCAAGATCTGA
TCAAGCAGGTTGGGATATCAGAGCTGAAGTTGACGAGGCCATATTATATACNCAAAAACA
ATATCCCCATATTGATATTAACTATGCAGTTTTAACNCCAGTTAATACTCNCGATTTAGT
TGACATGAATCTCATCGCCCAGTTATTCGCTGAGGATGAANCANCANCANCANCANC
Length of connected seq. 947
Full length Seq ID -
Full length Seq. -
Length of full length seq. -