VSJ231
Library VS
(Link to library)
Clone ID VSJ231
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSJ231Z
(Link to Original site)
Representative DNA sequence
>VSJ231 (VSJ231Q) /CSM/VS/VSJ2-B/VSJ231Q.Seq.d/
XXXXXXXXXXAAAAAAAANTNGGGCNNCCCCCCCTTTTTTTTTTTTTT
sequence update 2001. 3.22
Translated Amino Acid sequence
---KKXXAXPPFFFF


Translated Amino Acid sequence (All Frames)
Frame A:
---KKXXAXPPFFFF


Frame B:
---kkxgxpplffff


Frame C:
---kxxgxppffff


Homology vs CSM-cDNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 0
Number of Sequences: 97611
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 48
length of database: 80,480,566
effective HSP length: 16
effective length of query: 32
effective length of database: 78,918,790
effective search space: 2525401280
effective search space used: 2525401280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)








Dictyostelium discoideum cDNA Project Home



own update 2009. 4. 4
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 0
Number of Sequences: 24628037
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
length of query: 48
length of database: P,143,474,805
effective HSP length: 20
effective length of query: 28
effective length of database: O,650,914,065
effective search space: 886225593820
effective search space used: 886225593820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2003. 7.18
Homology vs Protein

***** No hits found ******

Lambda K H
0.307 0.148 0.478

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 50,916,185
protein update 2009. 3.25
PSORT -
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSJ231Z
3' end seq.
>VSJ231Z.Seq
----------AAAAAAAANTNGGGCNNCCCCCCCTTTTTTTTTTTTTT
Length of 3' end seq. 38
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -