VSJ206 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VSJ206
Library	VS (Link to library)
Clone ID	VSJ206 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16485-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VS/VSJ2-A/VSJ206Q.Seq.d/
Representative seq. ID	VSJ206E (Link to Original site)
Representative DNA sequence	>VSJ206 (VSJ206Q) /CSM/VS/VSJ2-A/VSJ206Q.Seq.d/ AAANGATAATTTAAATAAAAAAAGAAAATGAGTGGTGTTGTTGTAACTTTAAATTGAAAA CGGTCCAGCTATTTTAGGTGCTCTTAAAACTGGTGCTGGTCTTATCCGTAGCTTTTTCCC AGACAAAACTAAAGATCTCCAAGATGTTACCTATCGTGTTTATGAAGATGAACAACCAAA AGGAAAAGTTAGAGTTATCCTTGTAAATGAATCTAATGGATGGAATAAAGCTATTAGACT CTATCATGGTGGTAGTGGATATTCTGAATGTAAAGCAGGTGATAGCACTGGTACTGTTGC CAAAGGTGATCCACATTTGAAATATTCAATTCAAACAATTGATTTCCCATGGAAATCAGG TGGTCAACAATACATTGCCTTACAATTATGGAAACCAAAAGCATTAGGTATTTGGTACGA TCTTGAAGAAATTAGAATCACTCCAAGTAACCAATCTGATTATGATGGTAAAACATTAGT CTTTTACTGGGGTACTGATGGTTCACCTTATTTCCATAACCCAAATCATTTAATTAAACC ATATGAACTTTAAAATTCAAATTTTAAAATTTTAAAAAATTATCTTTAAATTATTATAAA TAAAAGAAACA
sequence update	2001. 3.26
Translated Amino Acid sequence	xdnlnkkrkvvlllIENGPAILGALKTGAGLIRSFFPDKTKDLQDVTYRVYEDEQPK GKVRVILVNESNGWNKAIRLYHGGSGYSECKAGDSTGTVAKGDPHLKYSIQTIDFPWKSG GQQYIALQLWKPKALGIWYDLEEIRITPSNQSDYDGKTLVFYWGTDGSPYFHNPNHLIKP YELnsnfkilknyl*iiinkrn
Translated Amino Acid sequence (All Frames)	Frame A: kxfkkkkmsgvvvtlnkrssyfrcsnwcwsyplfprqnrsprcylsclrttk rkssypckiwmesytlswwwifmsr*hwyccqrstfeifnsnnfpmeir wstihcltimetksirylvrsrnnhskpilwnislllgywftlfppksfnt itlkfkfnfkklslnyykkk Frame B: xdnlnkkrkvvlllIENGPAILGALKTGAGLIRSFFPDKTKDLQDVTYRVYEDEQPK GKVRVILVNESNGWNKAIRLYHGGSGYSECKAGDSTGTVAKGDPHLKYSIQTIDFPWKSG GQQYIALQLWKPKALGIWYDLEEIRITPSNQSDYDGKTLVFYWGTDGSPYFHNPNHLIKP YELnsnfkilknyliiinkrn Frame C: xiiikkenewcccnfklktvqlfvllklvlvlsvafsqtklkiskmlpivfmkmnnqk eklelslmnlmdgiklldsimvvvdilnvkqvialvllpkvihiniqfkqlishgnqv vnntlpynygnqkhvfgtilkkleslqvtnlimmvkhsftgvlmvhlisitqiilnh mnfkiqilkfkiifkll*iket
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VSJ206 (VSJ206Q) /CSM/VS/VSJ2-A/VSJ206Q.Seq.d/ 1041 0.0 VSF119 (VSF119Q) /CSM/VS/VSF1-A/VSF119Q.Seq.d/ 1041 0.0 VSD114 (VSD114Q) /CSM/VS/VSD1-A/VSD114Q.Seq.d/ 1041 0.0 VHN796 (VHN796Q) /CSM/VH/VHN7-D/VHN796Q.Seq.d/ 1025 0.0 VFI208 (VFI208Q) /CSM/VF/VFI2-A/VFI208Q.Seq.d/ 1025 0.0 VSK302 (VSK302Q) /CSM/VS/VSK3-A/VSK302Q.Seq.d/ 1011 0.0 VSC620 (VSC620Q) /CSM/VS/VSC6-A/VSC620Q.Seq.d/ 1009 0.0 VHD439 (VHD439Q) /CSM/VH/VHD4-B/VHD439Q.Seq.d/ 1007 0.0 VSB848 (VSB848Q) /CSM/VS/VSB8-B/VSB848Q.Seq.d/ 1001 0.0 VHH461 (VHH461Q) /CSM/VH/VHH4-C/VHH461Q.Seq.d/ 999 0.0
own update	2003. 1.10
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AL791883\|AL791883.1 Xenopus tropicalis EST, clone TNeu086g16 5'. 46 0.50 1 AC109661\|AC109661.6 Rattus norvegicus clone CH230-112B22, * SEQUENCING IN PROGRESS , 2 unordered pieces. 46 1.8 2 AL672068\|AL672068.13 Mouse DNA sequence from clone RP23-69M9 on chromosome X. 38 4.2 3 AC142447\|AC142447.3 Homo sapiens chromosome 8, clone XXfos-800846H1, complete sequence. 36 4.3 2 D83178\|D83178.1 Hordeum vulgare mRNA for endonuclease, complete cds. 42 7.8 1 AC099246\|AC099246.6 Rattus norvegicus clone CH230-193D24, SEQUENCING IN PROGRESS , 1 ordered piece. 42 7.8 1 AC112525\|AC112525.4 Rattus norvegicus clone CH230-233J14, SEQUENCING IN PROGRESS , 4 unordered pieces. 42 7.8 1 BX005213\|BX005213.12 Mouse DNA sequence SEQUENCING IN PROGRESS * from clone RP23-412I2. 42 7.8 1 U54556\|U54556.2 Litomosoides sigmodontis microfilarial sheath protein SHP3a (shp3a) and microfilarial sheath protein SHP3 (shp3) genes, complete cds. 42 7.8 1 AC120300\|AC120300.4 Rattus norvegicus clone CH230-34B15, * SEQUENCING IN PROGRESS *, 6 unordered pieces. 42 7.8 1
dna update	2003. 7.18
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CP000391_9(CP000391\|pid:none) Mesorhizobium sp. BNC1 plasmid 2, ... 34 2.7 CP000049_635(CP000049\|pid:none) Borrelia turicatae 91E135, compl... 33 5.9 DQ207482_1(DQ207482\|pid:none) Acinetobacter gerneri strain CIP 1... 33 7.7 BX294142_50(BX294142\|pid:none) Rhodopirellula baltica SH 1 compl... 33 7.7 FJ469982_1(FJ469982\|pid:none) Acinetobacter sp. HY-7 RNA polymer... 33 7.7
protein update	2009. 3.25
PSORT	psg: 0.75 gvh: 0.50 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.04 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 56.0 %: cytoplasmic 36.0 %: nuclear 4.0 %: mitochondrial 4.0 %: peroxisomal >> prediction for VSJ206 is cyt
5' end seq. ID	VSJ206F
5' end seq.	>VSJ206F.Seq AAAGNATAATTTAAATAAAAAAAGAAAATGAGTGGTGTTGTTGTAACTTTAATTGAAAAC GGTCCAGCTATTTTAGGTGCTCTTAAAACTGGTGCTGGTCTTATCCGTAGCTTTTTCCCA GACAAAACTAAAGATCTCCAAGATGTTACCTATCGTGTTTATGAAGATGAACAACCAAAA GGAAAAGTTAGAGTTATCCTTGTAAATGAATCTAATGGATGGAATAAAGCTATTAGACTC TATCATGGTGGTAGTGGATATTCTGAATGTAAAGCAGGTGATAGCACTGGTACTGTTGCC AAAGGTGATCCACATTTGAAATATTCAATTCAAACAATTGATTTCCCATGGAAATCAGGT GGTCAACAATACATTGCCTTACAATTATGGAAACCAAAAGCATTAGGTATTTGGTACGAT CTTGAAGAAATTAGAATCACTCCAAGTAACCAATCTGATTATGATGGTAAAACATTAGTC TTT----------
Length of 5' end seq.	483
3' end seq. ID	VSJ206Z
3' end seq.	>VSJ206Z.Seq ----------AAAGATAATTTAAATAAAAAAAGAAAATGAGTGGTGTTGTTGTAACTTTA AATTGAAAACGGTCCAGCTATTTTAGGTGCTCTTAAAACTGGTGCTGGTCTTATCCGTAG CTTTTTCCCAGACAAAACTAAAGATCTCCAAGATGTTACCTATCGTGTTTATGAAGATGA ACAACCAAAAGGAAAAGTTAGAGTTATCCTTGTAAATGAATCTAATGGATGGAATAAAGC TATTAGACTCTATCATGGTGGTAGTGGATATTCTGAATGTAAAGCAGGTGATAGCACTGG TACTGTTGCCAAAGGTGATCCACATTTGAAATATTCAATTCAAACAATTGATTTCCCATG GAAATCAGGTGGTCAACAATACATTGCCTTACAATTATGGAAACCAAAAGCATTAGGTAT TTGGTACGATCTTGAAGAAATTAGAATCACTCCAAGTAACCAATCTGATTATGATGGTAA AACATTAGTCTTTTACTGGGGTACTGATGGTTCACCTTATTTCCATAACCCAAATCATTT AATTAAACCATATGAACTTTAAAATTCAAATTTTAAAATTTTAAAAAATTATCTTTAAAT TATTATAAATAAAAGAAACA
Length of 3' end seq.	610
Connected seq. ID	VSJ206P
Connected seq.	>VSJ206P.Seq AAAGNATAATTTAAATAAAAAAAGAAAATGAGTGGTGTTGTTGTAACTTTAATTGAAAAC GGTCCAGCTATTTTAGGTGCTCTTAAAACTGGTGCTGGTCTTATCCGTAGCTTTTTCCCA GACAAAACTAAAGATCTCCAAGATGTTACCTATCGTGTTTATGAAGATGAACAACCAAAA GGAAAAGTTAGAGTTATCCTTGTAAATGAATCTAATGGATGGAATAAAGCTATTAGACTC TATCATGGTGGTAGTGGATATTCTGAATGTAAAGCAGGTGATAGCACTGGTACTGTTGCC AAAGGTGATCCACATTTGAAATATTCAATTCAAACAATTGATTTCCCATGGAAATCAGGT GGTCAACAATACATTGCCTTACAATTATGGAAACCAAAAGCATTAGGTATTTGGTACGAT CTTGAAGAAATTAGAATCACTCCAAGTAACCAATCTGATTATGATGGTAAAACATTAGTC TTT----------AAAGATAATTTAAATAAAAAAAGAAAATGAGTGGTGTTGTTGTAACT TTAAATTGAAAACGGTCCAGCTATTTTAGGTGCTCTTAAAACTGGTGCTGGTCTTATCCG TAGCTTTTTCCCAGACAAAACTAAAGATCTCCAAGATGTTACCTATCGTGTTTATGAAGA TGAACAACCAAAAGGAAAAGTTAGAGTTATCCTTGTAAATGAATCTAATGGATGGAATAA AGCTATTAGACTCTATCATGGTGGTAGTGGATATTCTGAATGTAAAGCAGGTGATAGCAC TGGTACTGTTGCCAAAGGTGATCCACATTTGAAATATTCAATTCAAACAATTGATTTCCC ATGGAAATCAGGTGGTCAACAATACATTGCCTTACAATTATGGAAACCAAAAGCATTAGG TATTTGGTACGATCTTGAAGAAATTAGAATCACTCCAAGTAACCAATCTGATTATGATGG TAAAACATTAGTCTTTTACTGGGGTACTGATGGTTCACCTTATTTCCATAACCCAAATCA TTTAATTAAACCATATGAACTTTAAAATTCAAATTTTAAAATTTTAAAAAATTATCTTTA AATTATTATAAATAAAAGAAACA
Length of connected seq.	1093
Full length Seq ID	VSJ206E
Full length Seq.	>VSJ206E.Seq AAANGATAATTTAAATAAAAAAAGAAAATGAGTGGTGTTGTTGTAACTTTAAATTGAAAA CGGTCCAGCTATTTTAGGTGCTCTTAAAACTGGTGCTGGTCTTATCCGTAGCTTTTTCCC AGACAAAACTAAAGATCTCCAAGATGTTACCTATCGTGTTTATGAAGATGAACAACCAAA AGGAAAAGTTAGAGTTATCCTTGTAAATGAATCTAATGGATGGAATAAAGCTATTAGACT CTATCATGGTGGTAGTGGATATTCTGAATGTAAAGCAGGTGATAGCACTGGTACTGTTGC CAAAGGTGATCCACATTTGAAATATTCAATTCAAACAATTGATTTCCCATGGAAATCAGG TGGTCAACAATACATTGCCTTACAATTATGGAAACCAAAAGCATTAGGTATTTGGTACGA TCTTGAAGAAATTAGAATCACTCCAAGTAACCAATCTGATTATGATGGTAAAACATTAGT CTTTTACTGGGGTACTGATGGTTCACCTTATTTCCATAACCCAAATCATTTAATTAAACC ATATGAACTTTAAAATTCAAATTTTAAAATTTTAAAAAATTATCTTTAAATTATTATAAA TAAAAGAAACA
Length of full length seq.	611

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas