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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ194
Library VS
(Link to library)
Clone ID VSJ194
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12017-1
Original site URL
Representative seq. ID VSJ194P
(Link to Original site)
Representative DNA sequence 
>VSJ194 (VSJ194Q) /CSM/VS/VSJ1-D/VSJ194Q.Seq.d/
CTCTGAACAATTCGCTGTTGCTGGTAACTTGGAAATGGATGCTGAATCCACCATTTTCAT
CGCAGAGACACTCTCTACCGATGCTGGCGCTCTTATCACTGTCGACGGTAATTTAGTACT
CAATGGTACCCTTATCATGGATATCACCGATACCAATCCAAGTGATGGTGATTCCTATAA
AATCATCTCATGTGCTGGTAGCACTCTTGGTACTTTCTCAACCATCGTTCCACTTACAAA
TGGTCAAGCCACCACTTTAGATTACTCTGTTTCCGTCTCTGATGATGGTATTGTCTCAAT
TAAATTTAATTCAAAAGAACAATCTCATAAGAAATTACCAGGTTGGGCTGTTTTCTTAAT
TATCGTTGCTGTCTTGGGTACTGTTGCTGGTGGAGCATATGGTTATATTCGTTATAAGAA
ACGTGCTGGTTATTTACCAATTAATAATTAAACTGTGAAAAAACGAANAAAAAAAXXXXX
XXXXXTTNTCAACCATCGTTCCNCTTACANATGGTCAAGCC
sequence update 2001. 3.22
Translated Amino Acid sequence 
l*tirccw*lgngc*ihhfhrrdtlyrcwrsyhcrr*fstqwypyhgyhryqsk*w*fl*
nhlmcw*hswyflnhrstykwsshhfrllcfrl**wycln*i*fkrtis*eitrlgcfln
yrcclgyccwwsiwlysl*etcwlftn**LNCEKTXKK---

---XSTIVPLTXGQA
Translated Amino Acid sequence (All Frames) 
Frame A:
l*tirccw*lgngc*ihhfhrrdtlyrcwrsyhcrr*fstqwypyhgyhryqsk*w*fl*
nhlmcw*hswyflnhrstykwsshhfrllcfrl**wycln*i*fkrtis*eitrlgcfln
yrcclgyccwwsiwlysl*etcwlftn**LNCEKTXKK---

---XSTIVPLTXGQA

Frame B:
seqfavagnlemdaestifiaetlstdagalitvdgnlvlngtlimditdtnpsdgdsyk
iiscagstlgtfstivpltngqattldysvsvsddgivsikfnskeqshkklpgwavfli
ivavlgtvaggaygyirykkragylpinn*tvkkrxkk---

---xqpsfxlxmvk

Frame C:
lnnslllvtwkwmlnppfssqrhslpmlallslstvi*ysmvplswispipiqvmvipik
sshvlvallvlsqpsfhlqmvkppl*itlfpslmmvlsqlnliqknnlirnyqvglfs*l
sllswvlllvehmvifvirnvlviyqliikl*knexk---

---xnhrsxyxwss
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ194 (VSJ194Q) /CSM/VS/VSJ1-D/VSJ194Q.Seq.d/                        906   0.0
SLK480 (SLK480Q) /CSM/SL/SLK4-D/SLK480Q.Seq.d/                        906   0.0
SLH443 (SLH443Q) /CSM/SL/SLH4-B/SLH443Q.Seq.d/                        906   0.0
SFK852 (SFK852Q) /CSM/SF/SFK8-C/SFK852Q.Seq.d/                        888   0.0
SLA843 (SLA843Q) /CSM/SL/SLA8-B/SLA843Q.Seq.d/                        882   0.0
VSE126 (VSE126Q) /CSM/VS/VSE1-B/VSE126Q.Seq.d/                        846   0.0
VFE541 (VFE541Q) /CSM/VF/VFE5-B/VFE541Q.Seq.d/                        823   0.0
VFB437 (VFB437Q) /CSM/VF/VFB4-B/VFB437Q.Seq.d/                        807   0.0
VFB272 (VFB272Q) /CSM/VF/VFB2-C/VFB272Q.Seq.d/                        751   0.0
SSJ749 (SSJ749Q) /CSM/SS/SSJ7-C/SSJ749Q.Seq.d/                        686   0.0
own update 2001.11.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   906  0.0  5
BQ626115|BQ626115.1 ph89f01.y1 Ostertagia ostertagi L3 SL1 TOPO v2 Ostertagia ostertagi cDNA 5' similar to TR:Q9U2A8 Q9U2A8 Y48B6A.2 PROTEIN. [1] ;contains element MSR1 repetitive element ;, mRNA sequence.    46  0.42  1
BQ100181|BQ100181.1 ph73e07.y1 Ostertagia ostertagi L4 SL1 TOPO v1 Ostertagia ostertagi cDNA similar to TR:Q9U2A8 Q9U2A8 Y48B6A.2 PROTEIN. [1] ;contains element MSR1 repetitive element ;, mRNA sequence.    46  0.42  1
BQ626164|BQ626164.1 ph94c05.y1 Ostertagia ostertagi L3 SL1 TOPO v2 Ostertagia ostertagi cDNA 5' similar to TR:Q9U2A8 Q9U2A8 Y48B6A.2 PROTEIN. [1] ;, mRNA sequence.    46  0.42  1
BQ626351|BQ626351.1 ph96g12.y1 Ostertagia ostertagi L3 SL1 TOPO v2 Ostertagia ostertagi cDNA 5' similar to TR:Q9U2A8 Q9U2A8 Y48B6A.2 PROTEIN. [1] ;, mRNA sequence.    46  0.42  1
BQ099847|BQ099847.1 ph69c10.y1 Ostertagia ostertagi L4 SL1 TOPO v1 Ostertagia ostertagi cDNA similar to TR:Q9U2A8 Q9U2A8 Y48B6A.2 PROTEIN. [1] ;, mRNA sequence.    46  0.42  1
BQ457950|BQ457950.1 ph84h04.y1 Ostertagia ostertagi L4 SL1 TOPO v1 Ostertagia ostertagi cDNA similar to TR:Q9U2A8 Q9U2A8 Y48B6A.2 PROTEIN. [1] ;, mRNA sequence.    46  0.42  1
CB043183|CB043183.1 Tc_L3_19C04_SKPL Teladorsagia circumcincta L3 library Teladorsagia circumcincta cDNA clone Tc_L3_19C04 5' similar to Q9U2A8 Y48B6A.2 protein. Caenorhabditis elegans, mRNA sequence.    44  1.7  1
CA994789|CA994789.1 Hc_L4_25G06_SKPL Haemonchus contortus L4 SL1 from David Knox Haemonchus contortus cDNA clone Hc_L4_25G06 5' similar to Y48B6A.2 CE22117 locus:rpl-43 status:Confirmed TR:Q9U2A8, mRNA sequence.    44  1.7  1
BM174124|R37A_MYXGL 60S RIBOSOMAL PROTEIN L37A, mRNA sequence.    44  1.7  1
dna update 2003. 7.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001032_262(CP001032|pid:none) Opitutus terrae PB90-1, complete...    39   0.095
AM285309_68(AM285309|pid:none) Spiroplasma citri GII3-3X chromos...    37   0.21
CP001097_2076(CP001097|pid:none) Chlorobium limicola DSM 245, co...    34   2.3
(Q081Q4) RecName: Full=1,4-alpha-glucan-branching enzyme;       ...    33   3.1
CP000096_363(CP000096|pid:none) Pelodictyon luteolum DSM 273, co...    33   5.2
CP001025_375(CP001025|pid:none) Burkholderia ambifaria MC40-6 ch...    33   5.2
AE017198_392(AE017198|pid:none) Lactobacillus johnsonii NCC 533,...    32   6.8
S38381_1(S38381|pid:none) AMY=alpha-amylase [Schwanniomyces occi...    32   6.8
AM420293_1892(AM420293|pid:none) Saccharopolyspora erythraea NRR...    32   6.8
CP000655_1089(CP000655|pid:none) Polynucleobacter necessarius su...    32   8.9
protein update 2009. 3.25
PSORT 

 psg: 0.88  gvh: 0.43  alm: 0.65  top: 0.60  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for VSJ194 is cyt
5' end seq. ID VSJ194F
5' end seq. 
>VSJ194F.Seq
CTCTGAACAATTCGCTGTTGCTGGTAACTTGGAAATGGATGCTGAATCCACCATTTTCAT
CGCAGAGACACTCTCTACCGATGCTGGCGCTCTTATCACTGTCGACGGTAATTTAGTACT
CAATGGTACCCTTATCATGGATATCACCGATACCAATCCAAGTGATGGTGATTCCTATAA
AATCATCTCATGTGCTGGTAGCACTCTTGGTACTTTCTCAACCATCGTTCCACTTACAAA
TGGTCAAGCCACCACTTTAGATTACTCTGTTTCCGTCTCTGATGATGGTATTGTCTCAAT
TAAATTTAATTCAAAAGAACAATCTCATAAGAAATTACCAGGTTGGGCTGTTTTCTTAAT
TATCGTTGCTGTCTTGGGTACTGTTGCTGGTGGAGCATATGGTTATATTCGTTATAAGAA
ACGTGCTGGTTATTTACCAATTAATAATTAAACTGTGAAAAAACGAANAAAAAAA-----
-----
Length of 5' end seq. 475
3' end seq. ID VSJ194Z
3' end seq. 
>VSJ194Z.Seq
----------TTNTCAACCATCGTTCCNCTTACANATGGTCAAGCC
Length of 3' end seq. 36
Connected seq. ID VSJ194P
Connected seq. 
>VSJ194P.Seq
CTCTGAACAATTCGCTGTTGCTGGTAACTTGGAAATGGATGCTGAATCCACCATTTTCAT
CGCAGAGACACTCTCTACCGATGCTGGCGCTCTTATCACTGTCGACGGTAATTTAGTACT
CAATGGTACCCTTATCATGGATATCACCGATACCAATCCAAGTGATGGTGATTCCTATAA
AATCATCTCATGTGCTGGTAGCACTCTTGGTACTTTCTCAACCATCGTTCCACTTACAAA
TGGTCAAGCCACCACTTTAGATTACTCTGTTTCCGTCTCTGATGATGGTATTGTCTCAAT
TAAATTTAATTCAAAAGAACAATCTCATAAGAAATTACCAGGTTGGGCTGTTTTCTTAAT
TATCGTTGCTGTCTTGGGTACTGTTGCTGGTGGAGCATATGGTTATATTCGTTATAAGAA
ACGTGCTGGTTATTTACCAATTAATAATTAAACTGTGAAAAAACGAANAAAAAAA-----
-----TTNTCAACCATCGTTCCNCTTACANATGGTCAAGCC
Length of connected seq. 511
Full length Seq ID -
Full length Seq. -
Length of full length seq. -