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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ193
Library VS
(Link to library)
Clone ID VSJ193
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U06985-1
Original site URL
Representative seq. ID VSJ193P
(Link to Original site)
Representative DNA sequence 
>VSJ193 (VSJ193Q) /CSM/VS/VSJ1-D/VSJ193Q.Seq.d/
CTAATTTCATTTTATAATACACAAAATGGCTCATAATAATTTAAGAAACTTTATAGAGAA
TATTAATATTAGATTTGATAATCAAGAAGAAGAAATAGATATTGAAAGAATTAAATTTGC
ATTAAAACATCGACCAGTACCACCAATTTCAGAATATCAATTTAATGAAATTACAGAAGA
AATTACAATTAATGAAAAGAATAAAACTAGAATAGGTGATTGTACAATTTGTTTATGTGA
ATTCCCAATCGATACAGAAGCATTAAAATTACCATGTAAACATTATTTTCATCATGAATG
TTTAGATTCCTGGTTAAAAACTTCTGCTGCTTGTCCAAACTGTCGTTATCCATTACCGAC
AATTGATGCTGAATATGAATCAATGGTTAGAATAGTTAGAGATTATGAATTAAAAAATGG
TTCAACTAATAGTTCGACAACCACCAATAATAACGATGACGATAATGATAATGATAGAAG
ATATTACTCAAATAATTCAATGTACTCTTAAAACATATATATACCTTTATTTAAAAATGT
ATAATAATAAATAAATAATTAAXXXXXXXXXXCTAATTTCATTTTATAATACACAAAATG
GCTCATAATAATTTAAGAAACTTTATAGAGAATATTAATATTAGATTTGATAATCAAGAA
GAAGAAATAGATATTGAAAGAATTAAATTTGCATTAAAACATCGACCAGTACCACCAATT
TCAGAATATCAATTTAATGAAATTACAGAAGAAATTACAATTAATGAAAAGAATAAAACT
AGAATAGGTGATTGTACAATTTGTTTATGTGAATTCCCAATCGATACAGAAGCATTAAAA
TTACCATGTAAACATTATTTTCATCATGAATGTTTAGATTCCTGGTTAAAAACTTCTGCT
GCTTGTCCAAACTGTCGTTATCCATTACCGACAATTGATGCTGAATATGAATCAATGGTT
AGAATAGTTAGAGATTATGAATTAAAAAATGGTTCAACTAATAGTTCGACAACCACCAAT
AATAACGATGACGATAATGATAATGATAGAAGATATTACTCAAATAATTCAATGTACTCT
TAAAACATATATATACCTTATTTAAAAATGTATAATAATAAATAAANATTAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
nfil*ytkwlIIi*etl*rilildliikkkk*ilkelnlh*nidqyhqfqninlmklqkk
lqlmkrikle*vivqfvyvnsqsiqkh*nyhvniifimnv*ipg*kllllvqtvvihyrq
lmlnmnqwle*leimn*kmvqlivrqppiitmtimimieditqiiqctlktyiylylkmy
nnk*ii---

---LISFYNTQNGS**fkklyrey*y*i**srrrnry*kn*iciktststtnfrisi**n
yrrnyn**ke*n*nr*lynlfm*ipnryrsikitm*tlfss*mfrflvknfcclsklsls
itdn*c*i*ing*ns*rl*ikkwfn**fdnhq**r*r*****killk*fnvllkhiytlf
knv***ixi
Translated Amino Acid sequence (All Frames) 
Frame A:
lisfyntqngs**fkklyrey*y*i**srrrnry*kn*iciktststtnfrisi**nyrr
nyn**ke*n*nr*lynlfm*ipnryrsikitm*tlfss*mfrflvknfcclsklslsitd
n*c*i*ing*ns*rl*ikkwfn**fdnhq**r*r*****killk*fnvllkhiytfi*kc
IIink*l---

---LISFYNTQNGS**fkklyrey*y*i**srrrnry*kn*iciktststtnfrisi**n
yrrnyn**ke*n*nr*lynlfm*ipnryrsikitm*tlfss*mfrflvknfcclsklsls
itdn*c*i*ing*ns*rl*ikkwfn**fdnhq**r*r*****killk*fnvllkhiytlf
knv***ixi

Frame B:
*fhfIIhkmahnnlrnfieninirfdnqeeeidierikfalkhrpvppiseyqfneitee
itineknktrigdcticlcefpidtealklpckhyfhhecldswlktsaacpncryplpt
idaeyesmvrivrdyelkngstnsstttnnndddndndrryysnnsmys*niyiplfknv
***inn*---

---*fhfiihkmahnnlrnfieninirfdnqeeeidierikfalkhrpvppiseyqfnei
teeitineknktrigdcticlcefpidtealklpckhyfhhecldswlktsaacpncryp
lptidaeyesmvrivrdyelkngstnsstttnnndddndndrryysnnsmys*niyipyl
kmynnk*xl

Frame C:
nfil*ytkwlIIi*etl*rilildliikkkk*ilkelnlh*nidqyhqfqninlmklqkk
lqlmkrikle*vivqfvyvnsqsiqkh*nyhvniifimnv*ipg*kllllvqtvvihyrq
lmlnmnqwle*leimn*kmvqlivrqppiitmtimimieditqiiqctlktyiylylkmy
nnk*ii---

---nfil*ytkwliii*etl*rilildliikkkk*ilkelnlh*nidqyhqfqninlmkl
qkklqlmkrikle*vivqfvyvnsqsiqkh*nyhvniifimnv*ipg*kllllvqtvvih
yrqlmlnmnqwle*leimn*kmvqlivrqppiitmtimimieditqiiqctlktyiyli*
kciiinkx*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ193 (VSJ193Q) /CSM/VS/VSJ1-D/VSJ193Q.Seq.d/                       1104   0.0
AFI519 (AFI519Q) /CSM/AF/AFI5-A/AFI519Q.Seq.d/                         46   0.001
CHK324 (CHK324Q) /CSM/CH/CHK3-A/CHK324Q.Seq.d/                         44   0.005
CHG873 (CHG873Q) /CSM/CH/CHG8-D/CHG873Q.Seq.d/                         42   0.018
VSJ880 (VSJ880Q) /CSM/VS/VSJ8-D/VSJ880Q.Seq.d/                         40   0.072
VSI720 (VSI720Q) /CSM/VS/VSI7-A/VSI720Q.Seq.d/                         38   0.29
VHO587 (VHO587Q) /CSM/VH/VHO5-D/VHO587Q.Seq.d/                         38   0.29
SFI746 (SFI746Q) /CSM/SF/SFI7-B/SFI746Q.Seq.d/                         38   0.29
SFI527 (SFI527Q) /CSM/SF/SFI5-B/SFI527Q.Seq.d/                         38   0.29
AHF744 (AHF744Q) /CSM/AH/AHF7-B/AHF744Q.Seq.d/                         38   0.29
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE014827|AE014827.1 Plasmodium falciparum 3D7 chromosome 14 section 12 of 13 of the complete sequence.    34  1e-07  13
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.        38  2e-06  13
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           46  4e-06  13
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          38  7e-06  12
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    38  1e-05  11
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    36  3e-05  14
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.    38  3e-05  13
AP003190|AP003190.2 Clostridium perfringens DNA, complete genome, section 6/10.    40  5e-05  12
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    38  6e-05  13
AF077591|AF077591.1 Penaeus monodon clone TUZX4-6:74 microsatellite sequence.    40  6e-05  4
dna update 2003. 7.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU953261_1(EU953261|pid:none) Zea mays clone 1394374 RING finger...    69   2e-10
AL357612_8(AL357612|pid:none) Arabidopsis thaliana DNA chromosom...    69   3e-10
AK117658_1(AK117658|pid:none) Arabidopsis thaliana At5g08139 mRN...    69   3e-10
AM479559_1(AM479559|pid:none) Vitis vinifera contig VV78X210188....    69   3e-10
AB025631_20(AB025631|pid:none) Arabidopsis thaliana genomic DNA,...    65   3e-09
AK118283_1(AK118283|pid:none) Arabidopsis thaliana At3g19950 mRN...    65   3e-09
AY095995_1(AY095995|pid:none) Arabidopsis thaliana AT3g19950/MPN...    65   3e-09
AC148994_27(AC148994|pid:none) Medicago truncatula chromosome 7 ...    65   3e-09
AC007576_29(AC007576|pid:none) Arabidopsis thaliana chromosome I...    65   4e-09
BT010726_1(BT010726|pid:none) Arabidopsis thaliana At3g13430 mRN...    65   4e-09
protein update 2009. 3.25
PSORT -
5' end seq. ID VSJ193F
5' end seq. 
>VSJ193F.Seq
CTAATTTCATTTTATAATACACAAAATGGCTCATAATAATTTAAGAAACTTTATAGAGAA
TATTAATATTAGATTTGATAATCAAGAAGAAGAAATAGATATTGAAAGAATTAAATTTGC
ATTAAAACATCGACCAGTACCACCAATTTCAGAATATCAATTTAATGAAATTACAGAAGA
AATTACAATTAATGAAAAGAATAAAACTAGAATAGGTGATTGTACAATTTGTTTATGTGA
ATTCCCAATCGATACAGAAGCATTAAAATTACCATGTAAACATTATTTTCATCATGAATG
TTTAGATTCCTGGTTAAAAACTTCTGCTGCTTGTCCAAACTGTCGTTATCCATTACCGAC
AATTGATGCTGAATATGAATCAATGGTTAGAATAGTTAGAGATTATGAATTAAAAAATGG
TTCAACTAATAGTTCGACAACCACCAATAATAACGATGACGATAATGATAATGATAGAAG
ATATTACTCAAATAATTCAATGTACTCTTAAAACATATATATACCTTTATTTAAAAATGT
ATAATAATAAATAAATAATTAA----------
Length of 5' end seq. 562
3' end seq. ID VSJ193Z
3' end seq. 
>VSJ193Z.Seq
----------CTAATTTCATTTTATAATACACAAAATGGCTCATAATAATTTAAGAAACT
TTATAGAGAATATTAATATTAGATTTGATAATCAAGAAGAAGAAATAGATATTGAAAGAA
TTAAATTTGCATTAAAACATCGACCAGTACCACCAATTTCAGAATATCAATTTAATGAAA
TTACAGAAGAAATTACAATTAATGAAAAGAATAAAACTAGAATAGGTGATTGTACAATTT
GTTTATGTGAATTCCCAATCGATACAGAAGCATTAAAATTACCATGTAAACATTATTTTC
ATCATGAATGTTTAGATTCCTGGTTAAAAACTTCTGCTGCTTGTCCAAACTGTCGTTATC
CATTACCGACAATTGATGCTGAATATGAATCAATGGTTAGAATAGTTAGAGATTATGAAT
TAAAAAATGGTTCAACTAATAGTTCGACAACCACCAATAATAACGATGACGATAATGATA
ATGATAGAAGATATTACTCAAATAATTCAATGTACTCTTAAAACATATATATACCTTATT
TAAAAATGTATAATAATAAATAAANATTAA
Length of 3' end seq. 560
Connected seq. ID VSJ193P
Connected seq. 
>VSJ193P.Seq
CTAATTTCATTTTATAATACACAAAATGGCTCATAATAATTTAAGAAACTTTATAGAGAA
TATTAATATTAGATTTGATAATCAAGAAGAAGAAATAGATATTGAAAGAATTAAATTTGC
ATTAAAACATCGACCAGTACCACCAATTTCAGAATATCAATTTAATGAAATTACAGAAGA
AATTACAATTAATGAAAAGAATAAAACTAGAATAGGTGATTGTACAATTTGTTTATGTGA
ATTCCCAATCGATACAGAAGCATTAAAATTACCATGTAAACATTATTTTCATCATGAATG
TTTAGATTCCTGGTTAAAAACTTCTGCTGCTTGTCCAAACTGTCGTTATCCATTACCGAC
AATTGATGCTGAATATGAATCAATGGTTAGAATAGTTAGAGATTATGAATTAAAAAATGG
TTCAACTAATAGTTCGACAACCACCAATAATAACGATGACGATAATGATAATGATAGAAG
ATATTACTCAAATAATTCAATGTACTCTTAAAACATATATATACCTTTATTTAAAAATGT
ATAATAATAAATAAATAATTAA----------CTAATTTCATTTTATAATACACAAAATG
GCTCATAATAATTTAAGAAACTTTATAGAGAATATTAATATTAGATTTGATAATCAAGAA
GAAGAAATAGATATTGAAAGAATTAAATTTGCATTAAAACATCGACCAGTACCACCAATT
TCAGAATATCAATTTAATGAAATTACAGAAGAAATTACAATTAATGAAAAGAATAAAACT
AGAATAGGTGATTGTACAATTTGTTTATGTGAATTCCCAATCGATACAGAAGCATTAAAA
TTACCATGTAAACATTATTTTCATCATGAATGTTTAGATTCCTGGTTAAAAACTTCTGCT
GCTTGTCCAAACTGTCGTTATCCATTACCGACAATTGATGCTGAATATGAATCAATGGTT
AGAATAGTTAGAGATTATGAATTAAAAAATGGTTCAACTAATAGTTCGACAACCACCAAT
AATAACGATGACGATAATGATAATGATAGAAGATATTACTCAAATAATTCAATGTACTCT
TAAAACATATATATACCTTATTTAAAAATGTATAATAATAAATAAANATTAA
Length of connected seq. 1122
Full length Seq ID -
Full length Seq. -
Length of full length seq. -