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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ185
Library VS
(Link to library)
Clone ID VSJ185
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16494-1
Original site URL
Representative seq. ID VSJ185P
(Link to Original site)
Representative DNA sequence 
>VSJ185 (VSJ185Q) /CSM/VS/VSJ1-D/VSJ185Q.Seq.d/
ATCCAATAAAACATTAAAAATTAAAAAGATTTTAGGCAAAAAGCAAAAGCAAAACAGACC
AGTCCCACAATGGATTCGTTTAAGAACTGATAACACCATCAGATACAATAACAAACGTAG
ACATTGGAGACGTACAAAGCTTGGTATCTAAACGCCTCAGTGCAAGCTTATTGGAACATA
TCGATCATTATATATTTTAATAAAATTGATCTTTTGGACGTTTAACAAAGAAAAAAAAAA
XXXXXXXXXXATCCAATAAAACATTAAAAATTAAAAAGATTTTAGGCAAAAAGCAAAAGC
AAAACAGACCAGTCCCACAATGGATTCGTTTAAGAACTGATAACACCATCAGATACAATA
ACAAACGTAGACATTGGAGACGTACAAAGCTTGGTATCTAAACGCCTCAGTGCAAGCTTA
TTGGAACATATCGATCATTATATATTTTAATAAAAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
snktlkikkilgkkqkqnrpvpqwirlrtdntirynnkrrhwrrtklgi*TPQCKLIGTY
RSLYILIKLIFWTFNKEKK---

---SNKTLKIKKILGKKQKQNRPVPQWIRLRTDNTIRYNNKRRHWRRTKLGI*tpqckli
gtyrslyilik
Translated Amino Acid sequence (All Frames) 
Frame A:
iq*nikn*kdfrqkakakqtsptmdsfkn**hhqiq*qt*tletykawylnasvqaywni
siiiyfnkidlldv*qrkkk---

---iq*nikn*kdfrqkakakqtsptmdsfkn**hhqiq*qt*tletykawylnasvqay
wnisiiiyfnk

Frame B:
snktlkikkilgkkqkqnrpvpqwirlrtdntirynnkrrhwrrtklgi*TPQCKLIGTY
RSLYILIKLIFWTFNKEKK---

---SNKTLKIKKILGKKQKQNRPVPQWIRLRTDNTIRYNNKRRHWRRTKLGI*tpqckli
gtyrslyilik

Frame C:
pikh*klkrf*aksksktdqshngfv*elitpsdtitnvdigdvqslvskrlsasllehi
dhyif**n*sfgrltkkkk---

---pikh*klkrf*aksksktdqshngfv*elitpsdtitnvdigdvqslvskrlsasll
ehidhyif**n
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK412 (VSK412Q) /CSM/VS/VSK4-A/VSK412Q.Seq.d/                        349   2e-95
VSJ763 (VSJ763Q) /CSM/VS/VSJ7-C/VSJ763Q.Seq.d/                        349   2e-95
VSJ185 (VSJ185Q) /CSM/VS/VSJ1-D/VSJ185Q.Seq.d/                        349   2e-95
VSI602 (VSI602Q) /CSM/VS/VSI6-A/VSI602Q.Seq.d/                        349   2e-95
VSI566 (VSI566Q) /CSM/VS/VSI5-C/VSI566Q.Seq.d/                        349   2e-95
VSG730 (VSG730Q) /CSM/VS/VSG7-B/VSG730Q.Seq.d/                        349   2e-95
VSG307 (VSG307Q) /CSM/VS/VSG3-A/VSG307Q.Seq.d/                        349   2e-95
VSE855 (VSE855Q) /CSM/VS/VSE8-C/VSE855Q.Seq.d/                        349   2e-95
VSC563 (VSC563Q) /CSM/VS/VSC5-C/VSC563Q.Seq.d/                        349   2e-95
VSB148 (VSB148Q) /CSM/VS/VSB1-B/VSB148Q.Seq.d/                        349   2e-95
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL110967|AL110967.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54  0.002  1
AL114405|AL114405.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54  0.002  1
AL117142|AL117142.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54  0.002  1
AL114232|AL114232.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54  0.002  1
AL114078|AL114078.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54  0.002  1
AL112311|AL112311.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54  0.002  1
AL111373|AL111373.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54  0.002  1
AL115377|AL115377.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54  0.002  1
AL114313|AL114313.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54  0.002  1
AL115802|AL115802.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    54  0.002  1
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY961478_1(AY961478|pid:none) Phytophthora infestans clone MY-09...    69   5e-11
FM992688_598(FM992688|pid:none) Candida dubliniensis CD36 chromo...    68   1e-10
(Q96W55) RecName: Full=60S ribosomal protein L39; AltName: Full=...    68   1e-10
FJ362595_1(FJ362595|pid:none) Vernicia fordii 60S ribosomal prot...    67   2e-10
EU952793_1(EU952793|pid:none) Zea mays clone 1289591 60S ribosom...    66   3e-10
AP003019_37(AP003019|pid:none) Oryza sativa Japonica Group genom...    66   3e-10
(P51425) RecName: Full=60S ribosomal protein L39;  &(P51426) Rec...    66   3e-10
CU633900_605(CU633900|pid:none) Podospora anserina genomic DNA c...    65   7e-10
AF548327_1(AF548327|pid:none) Branchiostoma belcheri ribosomal p...    65   7e-10
AC009755_15(AC009755|pid:none) Arabidopsis thaliana chromosome I...    65   7e-10
protein update 2009. 3.25
PSORT 

 psg: 0.81  gvh: 0.39  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.15  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VSJ185 is cyt
5' end seq. ID VSJ185F
5' end seq. 
>VSJ185F.Seq
ATCCAATAAAACATTAAAAATTAAAAAGATTTTAGGCAAAAAGCAAAAGCAAAACAGACC
AGTCCCACAATGGATTCGTTTAAGAACTGATAACACCATCAGATACAATAACAAACGTAG
ACATTGGAGACGTACAAAGCTTGGTATCTAAACGCCTCAGTGCAAGCTTATTGGAACATA
TCGATCATTATATATTTTAATAAAATTGATCTTTTGGACGTTTAACAAAGAAAAAAAAAA
----------
Length of 5' end seq. 240
3' end seq. ID VSJ185Z
3' end seq. 
>VSJ185Z.Seq
----------ATCCAATAAAACATTAAAAATTAAAAAGATTTTAGGCAAAAAGCAAAAGC
AAAACAGACCAGTCCCACAATGGATTCGTTTAAGAACTGATAACACCATCAGATACAATA
ACAAACGTAGACATTGGAGACGTACAAAGCTTGGTATCTAAACGCCTCAGTGCAAGCTTA
TTGGAACATATCGATCATTATATATTTTAATAAAAT
Length of 3' end seq. 206
Connected seq. ID VSJ185P
Connected seq. 
>VSJ185P.Seq
ATCCAATAAAACATTAAAAATTAAAAAGATTTTAGGCAAAAAGCAAAAGCAAAACAGACC
AGTCCCACAATGGATTCGTTTAAGAACTGATAACACCATCAGATACAATAACAAACGTAG
ACATTGGAGACGTACAAAGCTTGGTATCTAAACGCCTCAGTGCAAGCTTATTGGAACATA
TCGATCATTATATATTTTAATAAAATTGATCTTTTGGACGTTTAACAAAGAAAAAAAAAA
----------ATCCAATAAAACATTAAAAATTAAAAAGATTTTAGGCAAAAAGCAAAAGC
AAAACAGACCAGTCCCACAATGGATTCGTTTAAGAACTGATAACACCATCAGATACAATA
ACAAACGTAGACATTGGAGACGTACAAAGCTTGGTATCTAAACGCCTCAGTGCAAGCTTA
TTGGAACATATCGATCATTATATATTTTAATAAAAT
Length of connected seq. 446
Full length Seq ID -
Full length Seq. -
Length of full length seq. -