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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ182
Library VS
(Link to library)
Clone ID VSJ182
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U06982-1
Original site URL
Representative seq. ID VSJ182P
(Link to Original site)
Representative DNA sequence 
>VSJ182 (VSJ182Q) /CSM/VS/VSJ1-D/VSJ182Q.Seq.d/
CGTTTAAAAAGATAAACGAGTTTTTTTGTACATAATGTCTTCAACTAAAGCACCAGTTCC
ACCAACACAAGCTGAAATTCAACAAATTCAAGATCAATTAATAAAAGCAAGAGATGCATT
TCAAGTTCATGAAACAGAATTACAAAAACTTTCAGCATCAAGATCTAAACTTTTAACTCA
ATTAAATGAAAATGAAATGGTAAAAAAAGAATTTGATTTATTAGAAAGTGAAGCTAAAAT
TTATAAACTTAATGGACCAGTACTTTTTAAACAAACAAAAGAAGAAGCAGAAAATACTAT
TACTTTCTCGTTTAGATATTATAAATAATAATTTAAAAACAATTGAAACTAATTTTAAAG
ATATTGAAAAGAAAGCAATGGAACAAAGAAATAAAATTTTTGAATATCAAAATAAAATTA
GAAGTTTAACAGCACCACCACCACCACAAGCACAATAAAAGTAATAAAAAATATATATAA
AAACAAACAAAAAAAAAAXXXXXXXXXXCGTTTAAAAAGATAAACGAGTTTTTTTGTACA
TAATGTCTTCAACTAAAGCACCAGTTCCACCAACACAAGCTGAAATTCAACAAATTCAAG
ATCAATTAATAAAAGCAAGAGATGCATTTCAAGTTCATGAAACAGAATTACAAAAACTTT
CAGCATCAAGATCTAAACTTTTAACTCAATTAAATGAAAATGAAATGGTAAAAAAAGAAT
TTGATTTATTAGAAAGTGAAGCTAAAATTTATAAACTTAATGGACCAGTACTTTTTAAAC
AAACAAAAGAAGAAGCAGAAAATACTATTACTTCTCGTTTAGATATTATAAATAATAATT
TAAAAACAATTGAAACTAATTTTAAAGATATTGAAAAGAAAGCAATGGAACAAAGAAATA
AAATTTTTGAATATCAAAATAAAATTAGAAGTTTAACAGCACCACCACCACCACAAGCAC
AATAAAAGTAATAAAAAATATAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
v*kdkrvflyimsstkapvpptqaeiqqiqdqlikardafqvhetelqklsasrsklltq
lnenemvkkefdlleseakiyklngpvlfkqtkeeaentitfsfryyk**fknn*n*f*r
y*kesngtkk*nf*isk*n*KFNSTTTTTSTIKVIKNIYKNKQKK---

---FKKINEFFCT*clqlkhqfhqhklkfnkfkin**kqemhfkfmkqnyknfqhqdlnf
*ln*mkmkw*kknliy*kvklkfinlmdqyflnkqkkkqkillllv*il*iii*kqlkli
lkilkrkqwnkeikflnikiklev*qhhhhhkhnksnkky
Translated Amino Acid sequence (All Frames) 
Frame A:
rlkr*tsffvhnvfn*stsstnts*nstnsrsinkskrcisss*nritktfsiki*tfns
ik*k*ngkkri*firk*s*nl*t*wtstf*tnkrrsrkyyyflv*il*iii*kqlklilk
ilkrkqwnkeikflnikiklev*qhhhhhkhnksnkkyi*kqtkkk---

---rlkr*tsffvhnvfn*stsstnts*nstnsrsinkskrcisss*nritktfsiki*t
fnsik*k*ngkkri*firk*s*nl*t*wtstf*tnkrrsrkyyyfsfryyk**fknn*n*
f*ry*kesngtkk*nf*isk*n*kfnstttttstikvikni

Frame B:
v*kdkrvflyimsstkapvpptqaeiqqiqdqlikardafqvhetelqklsasrsklltq
lnenemvkkefdlleseakiyklngpvlfkqtkeeaentitfsfryyk**fknn*n*f*r
y*kesngtkk*nf*isk*n*KFNSTTTTTSTIKVIKNIYKNKQKK---

---v*kdkrvflyimsstkapvpptqaeiqqiqdqlikardafqvhetelqklsasrskl
ltqlnenemvkkefdlleseakiyklngpvlfkqtkeeaentitsrldiinnnlktietn
fkdiekkameqrnkifeyqnkirsltappppqaq*k**kiy

Frame C:
fkkineffct*clqlkhqfhqhklkfnkfkin**kqemhfkfmkqnyknfqhqdlnf*ln
*mkmkw*kknliy*kvklkfinlmdqyflnkqkkkqkilllsrldiinnnlktietnfkd
iekkameqrnkifeyqnkirsltappppqaq*k**kiyiktnkkk---

---FKKINEFFCT*clqlkhqfhqhklkfnkfkin**kqemhfkfmkqnyknfqhqdlnf
*ln*mkmkw*kknliy*kvklkfinlmdqyflnkqkkkqkillllv*il*iii*kqlkli
lkilkrkqwnkeikflnikiklev*qhhhhhkhnksnkky
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ182 (VSJ182Q) /CSM/VS/VSJ1-D/VSJ182Q.Seq.d/                        858   0.0
SHJ775 (SHJ775Q) /CSM/SH/SHJ7-D/SHJ775Q.Seq.d/                         44   0.004
VHO649 (VHO649Q) /CSM/VH/VHO6-C/VHO649Q.Seq.d/                         42   0.016
SHG753 (SHG753Q) /CSM/SH/SHG7-C/SHG753Q.Seq.d/                         42   0.016
AHA708 (AHA708Q) /CSM/AH/AHA7-A/AHA708Q.Seq.d/                         42   0.016
VSD754 (VSD754Q) /CSM/VS/VSD7-C/VSD754Q.Seq.d/                         38   0.25
VHN606 (VHN606Q) /CSM/VH/VHN6-A/VHN606Q.Seq.d/                         38   0.25
VHG181 (VHG181Q) /CSM/VH/VHG1-D/VHG181Q.Seq.d/                         38   0.25
VHD588 (VHD588Q) /CSM/VH/VHD5-D/VHD588Q.Seq.d/                         38   0.25
VFM830 (VFM830Q) /CSM/VF/VFM8-B/VFM830Q.Seq.d/                         38   0.25
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC004688|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    38  3e-08  14
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    34  4e-08  14
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38  1e-07  13
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2.    38  2e-06  14
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    36  2e-06  12
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    38  2e-06  15
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence.    38  3e-06  12
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    38  3e-06  11
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    38  4e-06  11
AX392734|AX392734.1 Sequence 24 from Patent WO0212526.            34  5e-06  9
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP007151_1107(AP007151|pid:none) Aspergillus oryzae RIB40 genomi...    86   2e-15
BT049166_1(BT049166|pid:none) Salmo salar clone ssal-eve-501-105...    85   3e-15
BC123375_1(BC123375|pid:none) Xenopus laevis hypothetical protei...    83   2e-14
(P52554) RecName: Full=Probable prefoldin subunit 6;  &T21191(T2...    83   2e-14
BC055580_1(BC055580|pid:none) Danio rerio zgc:66282, mRNA (cDNA ...    79   2e-13
CR382130_682(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...    76   2e-12
BT024577_1(BT024577|pid:none) Arabidopsis thaliana At1g29990 mRN...    75   2e-12
AK117588_1(AK117588|pid:none) Arabidopsis thaliana mRNA for unkn...    75   2e-12
CR954201_387(CR954201|pid:none) Ostreococcus tauri strain OTTH05...    75   2e-12
BX883042_9(BX883042|pid:none) Rattus norvegicus chromosome 20, m...    75   4e-12
protein update 2009. 3.25
PSORT 

 psg: 0.87  gvh: 0.13  alm: 0.60  top: 0.87  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 16.0 %: cytoskeletal
	 16.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  4.0 %: Golgi

>> prediction for VSJ182 is nuc
5' end seq. ID VSJ182F
5' end seq. 
>VSJ182F.Seq
CGTTTAAAAAGATAAACGAGTTTTTTTGTACATAATGTCTTCAACTAAAGCACCAGTTCC
ACCAACACAAGCTGAAATTCAACAAATTCAAGATCAATTAATAAAAGCAAGAGATGCATT
TCAAGTTCATGAAACAGAATTACAAAAACTTTCAGCATCAAGATCTAAACTTTTAACTCA
ATTAAATGAAAATGAAATGGTAAAAAAAGAATTTGATTTATTAGAAAGTGAAGCTAAAAT
TTATAAACTTAATGGACCAGTACTTTTTAAACAAACAAAAGAAGAAGCAGAAAATACTAT
TACTTTCTCGTTTAGATATTATAAATAATAATTTAAAAACAATTGAAACTAATTTTAAAG
ATATTGAAAAGAAAGCAATGGAACAAAGAAATAAAATTTTTGAATATCAAAATAAAATTA
GAAGTTTAACAGCACCACCACCACCACAAGCACAATAAAAGTAATAAAAAATATATATAA
AAACAAACAAAAAAAAAA----------
Length of 5' end seq. 498
3' end seq. ID VSJ182Z
3' end seq. 
>VSJ182Z.Seq
----------CGTTTAAAAAGATAAACGAGTTTTTTTGTACATAATGTCTTCAACTAAAG
CACCAGTTCCACCAACACAAGCTGAAATTCAACAAATTCAAGATCAATTAATAAAAGCAA
GAGATGCATTTCAAGTTCATGAAACAGAATTACAAAAACTTTCAGCATCAAGATCTAAAC
TTTTAACTCAATTAAATGAAAATGAAATGGTAAAAAAAGAATTTGATTTATTAGAAAGTG
AAGCTAAAATTTATAAACTTAATGGACCAGTACTTTTTAAACAAACAAAAGAAGAAGCAG
AAAATACTATTACTTCTCGTTTAGATATTATAAATAATAATTTAAAAACAATTGAAACTA
ATTTTAAAGATATTGAAAAGAAAGCAATGGAACAAAGAAATAAAATTTTTGAATATCAAA
ATAAAATTAGAAGTTTAACAGCACCACCACCACCACAAGCACAATAAAAGTAATAAAAAA
TATAT
Length of 3' end seq. 475
Connected seq. ID VSJ182P
Connected seq. 
>VSJ182P.Seq
CGTTTAAAAAGATAAACGAGTTTTTTTGTACATAATGTCTTCAACTAAAGCACCAGTTCC
ACCAACACAAGCTGAAATTCAACAAATTCAAGATCAATTAATAAAAGCAAGAGATGCATT
TCAAGTTCATGAAACAGAATTACAAAAACTTTCAGCATCAAGATCTAAACTTTTAACTCA
ATTAAATGAAAATGAAATGGTAAAAAAAGAATTTGATTTATTAGAAAGTGAAGCTAAAAT
TTATAAACTTAATGGACCAGTACTTTTTAAACAAACAAAAGAAGAAGCAGAAAATACTAT
TACTTTCTCGTTTAGATATTATAAATAATAATTTAAAAACAATTGAAACTAATTTTAAAG
ATATTGAAAAGAAAGCAATGGAACAAAGAAATAAAATTTTTGAATATCAAAATAAAATTA
GAAGTTTAACAGCACCACCACCACCACAAGCACAATAAAAGTAATAAAAAATATATATAA
AAACAAACAAAAAAAAAA----------CGTTTAAAAAGATAAACGAGTTTTTTTGTACA
TAATGTCTTCAACTAAAGCACCAGTTCCACCAACACAAGCTGAAATTCAACAAATTCAAG
ATCAATTAATAAAAGCAAGAGATGCATTTCAAGTTCATGAAACAGAATTACAAAAACTTT
CAGCATCAAGATCTAAACTTTTAACTCAATTAAATGAAAATGAAATGGTAAAAAAAGAAT
TTGATTTATTAGAAAGTGAAGCTAAAATTTATAAACTTAATGGACCAGTACTTTTTAAAC
AAACAAAAGAAGAAGCAGAAAATACTATTACTTCTCGTTTAGATATTATAAATAATAATT
TAAAAACAATTGAAACTAATTTTAAAGATATTGAAAAGAAAGCAATGGAACAAAGAAATA
AAATTTTTGAATATCAAAATAAAATTAGAAGTTTAACAGCACCACCACCACCACAAGCAC
AATAAAAGTAATAAAAAATATAT
Length of connected seq. 973
Full length Seq ID -
Full length Seq. -
Length of full length seq. -