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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ181
Library VS
(Link to library)
Clone ID VSJ181
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSJ181P
(Link to Original site)
Representative DNA sequence 
>VSJ181 (VSJ181Q) /CSM/VS/VSJ1-D/VSJ181Q.Seq.d/
CACACAATGTCTATGGTAGCCAAACGTCTCTTCACCACCCAATCAATCGAATCAGCCAAA
AAGATTCTTTCCTCATTACCAAAGAGCAACATGGATCAAAAAATCAAAGATTTACTCGAG
AAAAACGCTGACATCGCCAAAAAATATAACTTAAAATACACCCCAAAGACTGAACAAGAA
CAATTAAATGAAATCGTAGAAATCACCAACTCATTCAAAAAAGCAGGAGAAAAAGCTTTC
GAAGCTATGGGTAAAGCATACAAAGATGTTCAACCAATTGAAACTAAAACCGTCAAGGAT
TTCATTCCAGAATACACTGCTTAAATAAATAAATGATGATAATAATAATAGTTTAAATGA
AATATTACAAACCAAATTTAGTAAAATCATAAACAATAAAACAAGTTTGGAGAGAATTTT
AAATAATAATAATAATAAAAAAAAAANTNAAAAAATTTNNAAAAAAAAXXXXXXXXXXCC
ACGNGTCCGCACACAATGTNTATGGTAGCCAAANGTCTNTTCACCACCCAATCAATNGAA
TCAGCCAAAAAGATTTNTTTCCTCATTACCAAANAGCAACATGGATCAAAAAATCAAAGA
TTTACTCGANAAAAACGCTGACATCGCCAAAAAATATAACTTAAAATACACCCCAAAGAC
TGAACAAGAACAATTAAATGAAATCGTAGAAATCACCAACTCATTCAAAAAAGCAGGAGA
AAAAGCTTTCGAAGCTATGGGTAAAGCANACAAAGATGTTCAACCAATTGAAACTAAAAC
CGTCAAGGATTTCATTCCAGAATACNCTGCTTAAATAAATAAATGATGATAATAATAATA
GTTTAAATGAAATATTACAAACCAAATTTAGTAAAATCATAAACAATAAAACAAGTTGGA
GAGAATTTTAAATAATAATAATAATAAAAAAAAAAATAAAAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
tqclw*pnvssppnqsnqpkrffphyqratwikkskiysrktltspknit*ntpqrlnkn
n*mks*kspthskkqekklsklwvkhtkmfnqlklkpsrisfqntllk*INDDNNNSLNE
ILQTKFSKIINNKTSLERILNNNNNKKKXXKIXKK---

---HXSAHNVYGSQXSXHHPINXISQKDXFPHYQXATWIKKSKIYSXKTLTSPKNIT*nt
pqrlnknn*mks*kspthskkqekklsklwvkxtkmfnqlklkpsrisfqntllk*indd
nnnslneilqtkfskiinnktswref*iiiiikkkikk
Translated Amino Acid sequence (All Frames) 
Frame A:
htmsmvakrlfttqsiesakkilsslpksnmdqkikdlleknadiakkynlkytpkteqe
qlneiveitnsfkkagekafeamgkaykdvqpietktvkdfipeyta*ink******fk*
nitnqi**nhkq*nkfgenfk*****kkxxknxxkk---

---prvrtqcxw*pxvxsppnqxnqpkrfxsslpxsnmdqkikdllxknadiakkynlky
tpkteqeqlneiveitnsfkkagekafeamgkaxkdvqpietktvkdfipeyxa*ink**
****fk*nitnqi**nhkq*nklerilnnnnnkkknkk

Frame B:
tqclw*pnvssppnqsnqpkrffphyqratwikkskiysrktltspknit*ntpqrlnkn
n*mks*kspthskkqekklsklwvkhtkmfnqlklkpsrisfqntllk*INDDNNNSLNE
ILQTKFSKIINNKTSLERILNNNNNKKKXXKIXKK---

---HXSAHNVYGSQXSXHHPINXISQKDXFPHYQXATWIKKSKIYSXKTLTSPKNIT*nt
pqrlnknn*mks*kspthskkqekklsklwvkxtkmfnqlklkpsrisfqntllk*indd
nnnslneilqtkfskiinnktswref*iiiiikkkikk

Frame C:
hnvygsqtslhhpinrisqkdsflitkeqhgsknqrftrekr*hrqki*lkihpkd*trt
ik*nrrnhqliqksrrksfrsyg*siqrcstn*n*nrqgfhsrihclnk*mmiiiiv*mk
yykpnlvks*tikqvwref*iiiiikkkxkkfxkk---

---txphtmxmvakxlfttqsxesakkixflitkxqhgsknqrftrxkr*hrqki*lkih
pkd*trtik*nrrnhqliqksrrksfrsyg*sxqrcstn*n*nrqgfhsrixclnk*mmi
iiiv*mkyykpnlvks*tikqvgenfk*****kkk*kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ181 (VSJ181Q) /CSM/VS/VSJ1-D/VSJ181Q.Seq.d/                        634   0.0
VSG388 (VSG388Q) /CSM/VS/VSG3-D/VSG388Q.Seq.d/                        634   0.0
VFJ849 (VFJ849Q) /CSM/VF/VFJ8-C/VFJ849Q.Seq.d/                        634   0.0
SSI178 (SSI178Q) /CSM/SS/SSI1-D/SSI178Q.Seq.d/                        634   0.0
SSI177 (SSI177Q) /CSM/SS/SSI1-D/SSI177Q.Seq.d/                        634   0.0
CHL118 (CHL118Q) /CSM/CH/CHL1-A/CHL118Q.Seq.d/                        634   0.0
VSH362 (VSH362Q) /CSM/VS/VSH3-C/VSH362Q.Seq.d/                        599   e-170
VSC828 (VSC828Q) /CSM/VS/VSC8-B/VSC828Q.Seq.d/                        218   1e-55
VSE731 (VSE731Q) /CSM/VS/VSE7-B/VSE731Q.Seq.d/                        159   9e-38
VHP474 (VHP474Q) /CSM/VH/VHP4-D/VHP474Q.Seq.d/                         44   0.004
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE003730|AE003730.3 Drosophila melanogaster chromosome 3R, section 68 of 118 of the complete sequence.    40  7e-04  3
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    42  0.001  3
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    44  0.001  2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    44  0.002  4
BX187922|BX187922.1 Danio rerio genomic clone DKEY-203B24, genomic survey sequence.    36  0.002  3
AJ271978|AJ271978.1 Dictyostelium discoideum mRNA for putative protein kinase (kinY  gene).    34  0.003  4
M87278|M87278.1 Dictyostelium discoideum adenylyl cyclase germination protein (ACG) gene, complete cds.    44  0.003  3
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    44  0.003  2
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    44  0.004  2
BZ455522|BZ455522.1 BONAI16TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONAI16, DNA sequence.    38  0.004  2
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM910996_377(AM910996|pid:none) Plasmodium knowlesi strain H chr...    37   0.70
AY682195_70(AY682195|pid:none) Lactobacillus plantarum bacteriop...    37   0.70
(Q9TLS1) RecName: Full=Prenyl transferase;          EC=2.5.1.-; ...    36   1.6
CP000942_165(CP000942|pid:none) Ureaplasma parvum serovar 3 str....    35   2.7
CP001184_372(CP001184|pid:none) Ureaplasma urealyticum serovar 1...    35   2.7
AE002116_6(AE002116|pid:none) Ureaplasma parvum serovar 3 str. A...    35   2.7
CR382401_38(CR382401|pid:none) Plasmodium falciparum chromosome ...    35   3.5
(Q58974) Uncharacterized protein MJ1579.  &B64497(B64497) &L7711...    35   3.5
EF634321_1(EF634321|pid:none) Heliothis armigera cypovirus 5 iso...    35   3.5
(P31171) RecName: Full=Prenyl transferase;          EC=2.5.1.-; ...    35   3.5
protein update 2009. 3.25
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.65  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 12.0 %: cytoskeletal

>> prediction for VSJ181 is nuc
5' end seq. ID VSJ181F
5' end seq. 
>VSJ181F.Seq
CACACAATGTCTATGGTAGCCAAACGTCTCTTCACCACCCAATCAATCGAATCAGCCAAA
AAGATTCTTTCCTCATTACCAAAGAGCAACATGGATCAAAAAATCAAAGATTTACTCGAG
AAAAACGCTGACATCGCCAAAAAATATAACTTAAAATACACCCCAAAGACTGAACAAGAA
CAATTAAATGAAATCGTAGAAATCACCAACTCATTCAAAAAAGCAGGAGAAAAAGCTTTC
GAAGCTATGGGTAAAGCATACAAAGATGTTCAACCAATTGAAACTAAAACCGTCAAGGAT
TTCATTCCAGAATACACTGCTTAAATAAATAAATGATGATAATAATAATAGTTTAAATGA
AATATTACAAACCAAATTTAGTAAAATCATAAACAATAAAACAAGTTTGGAGAGAATTTT
AAATAATAATAATAATAAAAAAAAAANTNAAAAAATTTNNAAAAAAAA----------
Length of 5' end seq. 468
3' end seq. ID VSJ181Z
3' end seq. 
>VSJ181Z.Seq
----------CCACGNGTCCGCACACAATGTNTATGGTAGCCAAANGTCTNTTCACCACC
CAATCAATNGAATCAGCCAAAAAGATTTNTTTCCTCATTACCAAANAGCAACATGGATCA
AAAAATCAAAGATTTACTCGANAAAAACGCTGACATCGCCAAAAAATATAACTTAAAATA
CACCCCAAAGACTGAACAAGAACAATTAAATGAAATCGTAGAAATCACCAACTCATTCAA
AAAAGCAGGAGAAAAAGCTTTCGAAGCTATGGGTAAAGCANACAAAGATGTTCAACCAAT
TGAAACTAAAACCGTCAAGGATTTCATTCCAGAATACNCTGCTTAAATAAATAAATGATG
ATAATAATAATAGTTTAAATGAAATATTACAAACCAAATTTAGTAAAATCATAAACAATA
AAACAAGTTGGAGAGAATTTTAAATAATAATAATAATAAAAAAAAAAATAAAAAAAA
Length of 3' end seq. 467
Connected seq. ID VSJ181P
Connected seq. 
>VSJ181P.Seq
CACACAATGTCTATGGTAGCCAAACGTCTCTTCACCACCCAATCAATCGAATCAGCCAAA
AAGATTCTTTCCTCATTACCAAAGAGCAACATGGATCAAAAAATCAAAGATTTACTCGAG
AAAAACGCTGACATCGCCAAAAAATATAACTTAAAATACACCCCAAAGACTGAACAAGAA
CAATTAAATGAAATCGTAGAAATCACCAACTCATTCAAAAAAGCAGGAGAAAAAGCTTTC
GAAGCTATGGGTAAAGCATACAAAGATGTTCAACCAATTGAAACTAAAACCGTCAAGGAT
TTCATTCCAGAATACACTGCTTAAATAAATAAATGATGATAATAATAATAGTTTAAATGA
AATATTACAAACCAAATTTAGTAAAATCATAAACAATAAAACAAGTTTGGAGAGAATTTT
AAATAATAATAATAATAAAAAAAAAANTNAAAAAATTTNNAAAAAAAA----------CC
ACGNGTCCGCACACAATGTNTATGGTAGCCAAANGTCTNTTCACCACCCAATCAATNGAA
TCAGCCAAAAAGATTTNTTTCCTCATTACCAAANAGCAACATGGATCAAAAAATCAAAGA
TTTACTCGANAAAAACGCTGACATCGCCAAAAAATATAACTTAAAATACACCCCAAAGAC
TGAACAAGAACAATTAAATGAAATCGTAGAAATCACCAACTCATTCAAAAAAGCAGGAGA
AAAAGCTTTCGAAGCTATGGGTAAAGCANACAAAGATGTTCAACCAATTGAAACTAAAAC
CGTCAAGGATTTCATTCCAGAATACNCTGCTTAAATAAATAAATGATGATAATAATAATA
GTTTAAATGAAATATTACAAACCAAATTTAGTAAAATCATAAACAATAAAACAAGTTGGA
GAGAATTTTAAATAATAATAATAATAAAAAAAAAAATAAAAAAAA
Length of connected seq. 935
Full length Seq ID -
Full length Seq. -
Length of full length seq. -