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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ171
Library VS
(Link to library)
Clone ID VSJ171
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U06368-1
Original site URL
Representative seq. ID VSJ171P
(Link to Original site)
Representative DNA sequence 
>VSJ171 (VSJ171Q) /CSM/VS/VSJ1-C/VSJ171Q.Seq.d/
CAAAAAAATAAATAAATAAAAAATGGAAGAACAAAATGATTTCACTTGGGCCGTTAAAAA
TGGTGATATTGCAAATGTTAAAAAATCAGTTGAAGCCAAAAAAGATTTAATTTCAATTAC
TGATGGTAATAAAAGAGGTCCATGCCATTGGGCTGCTGATTTTAATCAAGTTGAAGTTTT
AGAATATTTAATTTCAAAAGGTGCTAAATTTGACAATACAGATGATTATGGAATTACACC
ATTATTAGCAGCAGTTTATGAAGGTCATACAGGTGCTGTTGAATTATTAGTTAAAAAAGG
TGCAAATAAATCTGTTGTTGGTCCAGATGGTCAAACTGCATATGATGCTGCTGAAAAAGC
TGATATTAAAGCATTATTAAAATAAATTATTCATAATATGCAATTCCAAACCAAAATCAA
AATCAAAATCCAAATCCAAAAAAAAAAXXXXXXXXXXCAAAAAAATAAATAAATAAAAAA
TGGAAGAACAAAATGATTTCACTTGGGCCGTTAAAAATGGTGATATTGCAAATGTTAAAA
AATCAGTTGAAGCCAAAAAAGATTTAATTTCAATTACTGATGGTAATAAAAGAGGTCCAT
GCCATTGGGCTGCTGATTTTAATCAAGTTGAAGTTTTAGAATATTTAATTTCAAAAGGTG
CTAAATTTGACAATACAGATGATTATGGAATTACACCATTATTAGCAGCAGTTTATGAAG
GTCATACAGGTGCTGTTGAATTATTAGTTAAAAAAGGTGCAAATAAATCTGTTGTTGGTC
CAGATGGTCAAACTGCATATGATGCTGCTGAAAAAGCTGATATTAAAGCATTATTAAAAT
AAATTATTCATAATATGCAATTCCAAACCAAAATCAAAATCAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
kk*inkkwknkmislgplkmvilqmlknqlkpkki*fqllmvikevhaiglliliklkf*
ni*fqkvlnltiqmimelhhy*qqfmkviqvllny*lkkvqinlllvqmvklhmmllkkl
ilkhy*NKLFIICNSKPKSKSKSKSKKK---

---KKINK*kmeeqndftwavkngdianvkksveakkdlisitdgnkrgpchwaadfnqv
evleyliskgakfdntddygitpllaavyeghtgavellvkkganksvvgpdgqtaydaa
ekadikallk*iihnmqfqtkikik
Translated Amino Acid sequence (All Frames) 
Frame A:
qknk*ikngrtk*fhlgr*kw*yckc*kis*sqkrfnfny*w**krsmplgc*f*ss*sf
rifnfkrc*i*qyr*lwnytiisssl*rsyrcc*iis*krck*iccwsrwsnci*cc*ks
*y*siikinys*yaipnqnqnqnpnpkkk---

---qknk*ikngrtk*fhlgr*kw*yckc*kis*sqkrfnfny*w**krsmplgc*f*ss
*sfrifnfkrc*i*qyr*lwnytiisssl*rsyrcc*iis*krck*iccwsrwsnci*cc
*ks*y*siikinys*yaipnqnqnq

Frame B:
kkink*kmeeqndftwavkngdianvkksveakkdlisitdgnkrgpchwaadfnqvevl
eyliskgakfdntddygitpllaavyeghtgavellvkkganksvvgpdgqtaydaaeka
dikallk*iihnmqfqtkikikiqiqkk---

---KKINK*kmeeqndftwavkngdianvkksveakkdlisitdgnkrgpchwaadfnqv
evleyliskgakfdntddygitpllaavyeghtgavellvkkganksvvgpdgqtaydaa
ekadikallk*iihnmqfqtkikik

Frame C:
kk*inkkwknkmislgplkmvilqmlknqlkpkki*fqllmvikevhaiglliliklkf*
ni*fqkvlnltiqmimelhhy*qqfmkviqvllny*lkkvqinlllvqmvklhmmllkkl
ilkhy*NKLFIICNSKPKSKSKSKSKKK---

---kk*inkkwknkmislgplkmvilqmlknqlkpkki*fqllmvikevhaigllilikl
kf*ni*fqkvlnltiqmimelhhy*qqfmkviqvllny*lkkvqinlllvqmvklhmmll
kklilkhy*nklfiicnskpksks
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ171 (VSJ171Q) /CSM/VS/VSJ1-C/VSJ171Q.Seq.d/                        801   0.0
VSI542 (VSI542Q) /CSM/VS/VSI5-B/VSI542Q.Seq.d/                        801   0.0
VSI432 (VSI432Q) /CSM/VS/VSI4-B/VSI432Q.Seq.d/                        801   0.0
VSH389 (VSH389Q) /CSM/VS/VSH3-D/VSH389Q.Seq.d/                        801   0.0
VSG192 (VSG192Q) /CSM/VS/VSG1-D/VSG192Q.Seq.d/                        801   0.0
VSB450 (VSB450Q) /CSM/VS/VSB4-C/VSB450Q.Seq.d/                        801   0.0
VSH628 (VSH628Q) /CSM/VS/VSH6-B/VSH628Q.Seq.d/                        793   0.0
VSG287 (VSG287Q) /CSM/VS/VSG2-D/VSG287Q.Seq.d/                        739   0.0
VSC654 (VSC654Q) /CSM/VS/VSC6-C/VSC654Q.Seq.d/                        353   3e-96
CFG185 (CFG185Q) /CSM/CF/CFG1-D/CFG185Q.Seq.d/                         44   0.004
own update 2001.11.21
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF479256|AF479256.1 Dictyostelium discoideum non-transporter ABC protein AbcF4 (abcF4) gene, complete cds; and unknown gene.    40  4e-04  3
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    32  0.003  10
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5.    40  0.003  11
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40  0.006  14
AE016748|AE016748.1 Staphylococcus epidermidis ATCC 12228, section 5 of 9 of the complete genome.    32  0.006  15
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    34  0.019  11
AC136343|AC136343.1 Homo sapiens chromosome 18 clone RP13-520C22 map 18, LOW-PASS SEQUENCE SAMPLING.    40  0.019  2
AC013385|AC013385.3 Homo sapiens chromosome 2 clone RP11-408K12 map 2, LOW-PASS SEQUENCE SAMPLING.    40  0.045  2
BZ392578|BZ392578.1 EINAB02TR EI_10_12_KB Entamoeba invadens genomic clone EINAB02, DNA sequence.    38  0.063  2
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    34  0.12  10
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55FM5) RecName: Full=Myotrophin homolog;                            244   3e-63
AJ252240_1(AJ252240|pid:none) Suberites domuncula mRNA for Myol ...   120   7e-26
AY266681_1(AY266681|pid:none) Canis familiaris heart myotrophin ...   115   2e-24
AK002620_1(AK002620|pid:none) Mus musculus adult male kidney cDN...   115   2e-24
DQ000582_1(DQ000582|pid:none) Synthetic construct clone PSF:1104...   115   2e-24
(P62774) RecName: Full=Myotrophin; AltName: Full=Protein V-1; Al...   114   5e-24
(Q7T2B9) RecName: Full=Myotrophin;  &BC054609_1(BC054609|pid:non...   112   2e-23
BT058910_1(BT058910|pid:none) Salmo salar clone ssal-rgf-512-322...   111   3e-23
(Q7T0Q1) RecName: Full=Myotrophin;  &BC056092_1(BC056092|pid:none)    109   1e-22
AM231309_1(AM231309|pid:none) Lubomirskia baikalensis mRNA for m...   102   2e-20
protein update 2009. 3.25
PSORT 

 psg: 0.41  gvh: 0.38  alm: 0.70  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.00
 nuc: 0.45  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for VSJ171 is nuc
5' end seq. ID VSJ171F
5' end seq. 
>VSJ171F.Seq
CAAAAAAATAAATAAATAAAAAATGGAAGAACAAAATGATTTCACTTGGGCCGTTAAAAA
TGGTGATATTGCAAATGTTAAAAAATCAGTTGAAGCCAAAAAAGATTTAATTTCAATTAC
TGATGGTAATAAAAGAGGTCCATGCCATTGGGCTGCTGATTTTAATCAAGTTGAAGTTTT
AGAATATTTAATTTCAAAAGGTGCTAAATTTGACAATACAGATGATTATGGAATTACACC
ATTATTAGCAGCAGTTTATGAAGGTCATACAGGTGCTGTTGAATTATTAGTTAAAAAAGG
TGCAAATAAATCTGTTGTTGGTCCAGATGGTCAAACTGCATATGATGCTGCTGAAAAAGC
TGATATTAAAGCATTATTAAAATAAATTATTCATAATATGCAATTCCAAACCAAAATCAA
AATCAAAATCCAAATCCAAAAAAAAAA----------
Length of 5' end seq. 447
3' end seq. ID VSJ171Z
3' end seq. 
>VSJ171Z.Seq
----------CAAAAAAATAAATAAATAAAAAATGGAAGAACAAAATGATTTCACTTGGG
CCGTTAAAAATGGTGATATTGCAAATGTTAAAAAATCAGTTGAAGCCAAAAAAGATTTAA
TTTCAATTACTGATGGTAATAAAAGAGGTCCATGCCATTGGGCTGCTGATTTTAATCAAG
TTGAAGTTTTAGAATATTTAATTTCAAAAGGTGCTAAATTTGACAATACAGATGATTATG
GAATTACACCATTATTAGCAGCAGTTTATGAAGGTCATACAGGTGCTGTTGAATTATTAG
TTAAAAAAGGTGCAAATAAATCTGTTGTTGGTCCAGATGGTCAAACTGCATATGATGCTG
CTGAAAAAGCTGATATTAAAGCATTATTAAAATAAATTATTCATAATATGCAATTCCAAA
CCAAAATCAAAATCAAA
Length of 3' end seq. 427
Connected seq. ID VSJ171P
Connected seq. 
>VSJ171P.Seq
CAAAAAAATAAATAAATAAAAAATGGAAGAACAAAATGATTTCACTTGGGCCGTTAAAAA
TGGTGATATTGCAAATGTTAAAAAATCAGTTGAAGCCAAAAAAGATTTAATTTCAATTAC
TGATGGTAATAAAAGAGGTCCATGCCATTGGGCTGCTGATTTTAATCAAGTTGAAGTTTT
AGAATATTTAATTTCAAAAGGTGCTAAATTTGACAATACAGATGATTATGGAATTACACC
ATTATTAGCAGCAGTTTATGAAGGTCATACAGGTGCTGTTGAATTATTAGTTAAAAAAGG
TGCAAATAAATCTGTTGTTGGTCCAGATGGTCAAACTGCATATGATGCTGCTGAAAAAGC
TGATATTAAAGCATTATTAAAATAAATTATTCATAATATGCAATTCCAAACCAAAATCAA
AATCAAAATCCAAATCCAAAAAAAAAA----------CAAAAAAATAAATAAATAAAAAA
TGGAAGAACAAAATGATTTCACTTGGGCCGTTAAAAATGGTGATATTGCAAATGTTAAAA
AATCAGTTGAAGCCAAAAAAGATTTAATTTCAATTACTGATGGTAATAAAAGAGGTCCAT
GCCATTGGGCTGCTGATTTTAATCAAGTTGAAGTTTTAGAATATTTAATTTCAAAAGGTG
CTAAATTTGACAATACAGATGATTATGGAATTACACCATTATTAGCAGCAGTTTATGAAG
GTCATACAGGTGCTGTTGAATTATTAGTTAAAAAAGGTGCAAATAAATCTGTTGTTGGTC
CAGATGGTCAAACTGCATATGATGCTGCTGAAAAAGCTGATATTAAAGCATTATTAAAAT
AAATTATTCATAATATGCAATTCCAAACCAAAATCAAAATCAAA
Length of connected seq. 874
Full length Seq ID -
Full length Seq. -
Length of full length seq. -