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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ152
Library VS
(Link to library)
Clone ID VSJ152
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16490-1
Original site URL
Representative seq. ID VSJ152P
(Link to Original site)
Representative DNA sequence 
>VSJ152 (VSJ152Q) /CSM/VS/VSJ1-C/VSJ152Q.Seq.d/
GTTTTATATATAGAGACCCTTCTCCAGCACCTCAAGGTAAAATTAGAGATGGTTCAAAAG
ACCCAAAAACACCAGGTGGTGGTGGTGGTGGTGGTGGTGGTATTTCTCCAAATGGTGGTG
CTCCCCTTGGTGGTAAAGGATTCTCAATGTAGTTTTAACTTTATTTTGTTACAATTCGAT
AATTATTATTAAATCAAATAAAATTATTATATTTGGTTCATCTTCTATTTTAAAAAAAAA
AXXXXXXXXXXGTTTTATATATAGAGACCCTTCTCCAGCACCTCAAGGTAAAATTAGAGA
TGGTTCAAAAGACCCAAANACNCCNGGTGGTGGTGGTGGTGGTGGTGGTNGTATTTCTCC
AAATGGTGGTGCTCCCCTTGGTGGTAAAGGATTCTCAATGTAGTTTTAACTTTATTTTGT
TACAATTCGATAATTA
sequence update 2001. 3.22
Translated Amino Acid sequence 
fyi*rpfsstsr*n*rwfkrpkntrwwwwwwwwyfskwwcspww*RILNVVLTLFCYNSI
IIIKSNKIIIFGSSSILKKK---

---VLYIETLLQHLKVKLEMVQKTQXXXVVVVVVVVVFLQMVVLPLVVKDSQCSFNFILL
QFDN
Translated Amino Acid sequence (All Frames) 
Frame A:
vlyietllqhlkvklemvqktqkhqvvvvvvvvvflqmvvlplvvkdsqcsfnfillqfd
nyy*ik*nyyiwfifyfkkk---

---VLYIETLLQHLKVKLEMVQKTQXXXVVVVVVVVVFLQMVVLPLVVKDSQCSFNFILL
QFDN

Frame B:
fyi*rpfsstsr*n*rwfkrpkntrwwwwwwwwyfskwwcspww*RILNVVLTLFCYNSI
IIIKSNKIIIFGSSSILKKK---

---fyi*rpfsstsr*n*rwfkrpkxxxwwwwwwwxyfskwwcspww*rilnvvltlfcy
nsii

Frame C:
fiyrdpspapqgkirdgskdpktpgggggggggispnggaplggkgfsm*f*lyfvtir*
lllnqikllylvhllf*kk---

---fiyrdpspapqgkirdgskdpxtpggggggggxispnggaplggkgfsm*f*lyfvt
ir*l
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK358 (VSK358Q) /CSM/VS/VSK3-C/VSK358Q.Seq.d/                        258   6e-68
VSK330 (VSK330Q) /CSM/VS/VSK3-B/VSK330Q.Seq.d/                        258   6e-68
VSJ152 (VSJ152Q) /CSM/VS/VSJ1-C/VSJ152Q.Seq.d/                        258   6e-68
VSI808 (VSI808Q) /CSM/VS/VSI8-A/VSI808Q.Seq.d/                        258   6e-68
VSI734 (VSI734Q) /CSM/VS/VSI7-B/VSI734Q.Seq.d/                        258   6e-68
VSH249 (VSH249Q) /CSM/VS/VSH2-C/VSH249Q.Seq.d/                        258   6e-68
VSG802 (VSG802Q) /CSM/VS/VSG8-A/VSG802Q.Seq.d/                        258   6e-68
VSG716 (VSG716Q) /CSM/VS/VSG7-A/VSG716Q.Seq.d/                        258   6e-68
VSG430 (VSG430Q) /CSM/VS/VSG4-B/VSG430Q.Seq.d/                        258   6e-68
VSG252 (VSG252Q) /CSM/VS/VSG2-C/VSG252Q.Seq.d/                        258   6e-68
own update 2001.11.21
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE014082|AE014082.1 Buchnera aphidicola str. Sg (Schizaphis graminum) section 7 of 57 of the complete genome.    38  0.049  3
BX571665|BX571665.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-276E8.    48  0.088  1
BF963376|BF963376.1 QV2-NN0045-201200-577-f09 NN0045 Homo sapiens cDNA, mRNA sequence.    34  0.19  2
BH718750|BH718750.1 BOMKT06TR BO_2_3_KB Brassica oleracea genomic clone BOMKT06, DNA sequence.    46  0.35  1
AY140904|AY140904.1 Culicoides sp. LJH-2002 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.    42  0.66  2
AE014156|AE014156.1 Streptococcus pyogenes MGAS315, section 21 of 37 of the complete genome.    42  0.80  2
AC136142|AC136142.12 Medicago truncatula clone mth2-9f9, complete sequence.    36  0.85  3
AC112672|AC112672.2 Mus musculus clone RP24-418P12, LOW-PASS SEQUENCE SAMPLING.    36  0.92  3
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          40  1.1  2
AC132681|AC132681.3 Mus musculus chromosome UNK clone RP23-442K13, WORKING DRAFT SEQUENCE, 6 unordered pieces.    44  1.4  1
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(B0G125) RecName: Full=Uncharacterized protein DDB_G0295473;           83   2e-15
protein update 2009. 3.25
PSORT 

 psg: 0.93  gvh: 0.42  alm: 0.10  top: 0.60  tms: 0.13  mit: 0.39  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 16.0 %: plasma membrane
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for VSJ152 is end
5' end seq. ID VSJ152F
5' end seq. 
>VSJ152F.Seq
GTTTTATATATAGAGACCCTTCTCCAGCACCTCAAGGTAAAATTAGAGATGGTTCAAAAG
ACCCAAAAACACCAGGTGGTGGTGGTGGTGGTGGTGGTGGTATTTCTCCAAATGGTGGTG
CTCCCCTTGGTGGTAAAGGATTCTCAATGTAGTTTTAACTTTATTTTGTTACAATTCGAT
AATTATTATTAAATCAAATAAAATTATTATATTTGGTTCATCTTCTATTTTAAAAAAAAA
A----------
Length of 5' end seq. 241
3' end seq. ID VSJ152Z
3' end seq. 
>VSJ152Z.Seq
----------GTTTTATATATAGAGACCCTTCTCCAGCACCTCAAGGTAAAATTAGAGAT
GGTTCAAAAGACCCAAANACNCCNGGTGGTGGTGGTGGTGGTGGTGGTNGTATTTCTCCA
AATGGTGGTGCTCCCCTTGGTGGTAAAGGATTCTCAATGTAGTTTTAACTTTATTTTGTT
ACAATTCGATAATTA
Length of 3' end seq. 185
Connected seq. ID VSJ152P
Connected seq. 
>VSJ152P.Seq
GTTTTATATATAGAGACCCTTCTCCAGCACCTCAAGGTAAAATTAGAGATGGTTCAAAAG
ACCCAAAAACACCAGGTGGTGGTGGTGGTGGTGGTGGTGGTATTTCTCCAAATGGTGGTG
CTCCCCTTGGTGGTAAAGGATTCTCAATGTAGTTTTAACTTTATTTTGTTACAATTCGAT
AATTATTATTAAATCAAATAAAATTATTATATTTGGTTCATCTTCTATTTTAAAAAAAAA
A----------GTTTTATATATAGAGACCCTTCTCCAGCACCTCAAGGTAAAATTAGAGA
TGGTTCAAAAGACCCAAANACNCCNGGTGGTGGTGGTGGTGGTGGTGGTNGTATTTCTCC
AAATGGTGGTGCTCCCCTTGGTGGTAAAGGATTCTCAATGTAGTTTTAACTTTATTTTGT
TACAATTCGATAATTA
Length of connected seq. 426
Full length Seq ID -
Full length Seq. -
Length of full length seq. -