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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ119
Library VS
(Link to library)
Clone ID VSJ119
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U06605-1
Original site URL
Representative seq. ID VSJ119P
(Link to Original site)
Representative DNA sequence 
>VSJ119 (VSJ119Q) /CSM/VS/VSJ1-A/VSJ119Q.Seq.d/
CCTTTTCAAAAAGTCAAATTTAATTAAAAAAAAAAATGACAACAATAGGACCAATTGAAA
ATGAAATTAAAGAATTATTAACAAAAGAATTAAATCCAATAAATTTAGAAATTATAAATG
AAAGTTATATGCATAATGTACCAAAAGGATCTGAATCACATTTTAAAGTTAAAATTGTTT
CTGAAAAATTTGAAACTTTATCAATGATTGAACAACACAGATTAGTAAATGAAATTTTAA
AAAATTTTATTGGAAATGGTAAAATACATGCATTAAGTATAACATCAAGAACTCCAACTC
AATGGAAAAAAAATAATCAAACAAAAATCAATGTTGATGATGATAAATCACCATCTTGTA
AAGGAGGTTTTGGTAAATAAAAAAAGAAATAATTATAAATATGTAAAAAAAAAAXXXXXX
XXXXCCACGNGTCCGCCTTTTCAAAAAAGTCAAATTTAATTAAAAAAAAAAATGACAACA
ATAGGACCAATTGAAAATGAAATTAAAGAATTATTAACAAAAGAATTAAATCCAATAAAT
TTAGAAATTATAAATGAAAGTTATATGCATAATGTACCAAAAGGATCTGAATCACATTTT
AAAGTTAAAATTGTTTCTGAAAAATTTGAAACTTTATCAATGATTGAACAACACAGATTA
GTAAATGAAATTTTAAAAAATTTTATTGGAAATGGTAAAATACATGCATTAAGTATAACA
TCAAGAACTCCAACTCAAGGAAAAAAAATAATCAAACAAAAATCAATGTTGATGATGATA
AATCACCATCTTGTAAAGGAGGTTTGGTAAATAAAAAAAGAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
pfqkvkfn*kkk*qq*dqlkmklkny*qkn*iq*i*kl*mkvicimyqkdlnhilklklf
lknlklyq*lnntd**mkf*killemvkymh*v*HQELQLNGKKIIKQKSMLMMINHHLV
KEVLVNKKRNNYKYVKKK---

---HXSAFSKKSNLIKKKNDNNRTN*k*n*riinkriksnkfrnyk*klya*ctkri*it
f*s*ncf*ki*nfind*ttqisk*nfkkfywkw*ntcikyniknsnsrkknnqtkinvdd
dkspsckgglvnkkr
Translated Amino Acid sequence (All Frames) 
Frame A:
pfqkvkfn*kkk*qq*dqlkmklkny*qkn*iq*i*kl*mkvicimyqkdlnhilklklf
lknlklyq*lnntd**mkf*killemvkymh*v*HQELQLNGKKIIKQKSMLMMINHHLV
KEVLVNKKRNNYKYVKKK---

---prvrlfkkvkfn*kkk*qq*dqlkmklkny*qkn*iq*i*kl*mkvicimyqkdlnh
ilklklflknlklyq*lnntd**mkf*killemvkymh*v*hqelqlkekk*snknqc**
**itil*rrfgk*kk

Frame B:
lfkksnlikkkndnnrtn*k*n*riinkriksnkfrnyk*klya*ctkri*itf*s*ncf
*ki*nfind*ttqisk*nfkkfywkw*ntcikyniknsnsmekk*snknqc****itil*
rrfw*ikkeiiinm*kk---

---HXSAFSKKSNLIKKKNDNNRTN*k*n*riinkriksnkfrnyk*klya*ctkri*it
f*s*ncf*ki*nfind*ttqisk*nfkkfywkw*ntcikyniknsnsrkknnqtkinvdd
dkspsckgglvnkkr

Frame C:
fsksqi*lkkkmttigpieneikelltkelnpinleiinesymhnvpkgseshfkvkivs
ekfetlsmieqhrlvneilknfigngkihalsitsrtptqwkknnqtkinvdddkspsck
ggfgk*kkk*l*ickkk---

---txppfqksqi*lkkkmttigpieneikelltkelnpinleiinesymhnvpkgsesh
fkvkivsekfetlsmieqhrlvneilknfigngkihalsitsrtptqgkkiikqksmlmm
inhhlvkevw*ikke
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ119 (VSJ119Q) /CSM/VS/VSJ1-A/VSJ119Q.Seq.d/                        650   0.0
VSD833 (VSD833Q) /CSM/VS/VSD8-B/VSD833Q.Seq.d/                        611   e-174
VSE375 (VSE375Q) /CSM/VS/VSE3-D/VSE375Q.Seq.d/                        583   e-165
VSI588 (VSI588Q) /CSM/VS/VSI5-D/VSI588Q.Seq.d/                         42   0.013
CHI376 (CHI376Q) /CSM/CH/CHI3-D/CHI376Q.Seq.d/                         42   0.013
VHH662 (VHH662Q) /CSM/VH/VHH6-C/VHH662Q.Seq.d/                         40   0.052
VHC465 (VHC465Q) /CSM/VH/VHC4-C/VHC465Q.Seq.d/                         40   0.052
SFJ877 (SFJ877Q) /CSM/SF/SFJ8-D/SFJ877Q.Seq.d/                         40   0.052
VHP770 (VHP770Q) /CSM/VH/VHP7-C/VHP770Q.Seq.d/                         38   0.21
VHP249 (VHP249Q) /CSM/VH/VHP2-C/VHP249Q.Seq.d/                         38   0.21
own update 2003. 7. 8
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   533  e-177  12
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    40  1e-08  12
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40  2e-07  14
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    34  2e-06  11
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    42  6e-06  11
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36  2e-05  11
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38  3e-05  13
AL110479|AL110479.1 Caenorhabditis elegans YAC Y105C5B.           34  9e-05  10
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    34  1e-04  12
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34  1e-04  13
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC167635_1(BC167635|pid:none) Xenopus tropicalis hypothetical pr...   112   1e-23
AY341152_1(AY341152|pid:none) Anopheles gambiae clone L35_3 BolA...   108   3e-22
BC077096_1(BC077096|pid:none) Danio rerio zgc:101119, mRNA (cDNA...   102   1e-20
CR378665_177(CR378665|pid:none) Photobacterium profundum SS9; se...    97   8e-19
(Q3T138) RecName: Full=BolA-like protein 1;  &BC102140_1(BC10214...    96   2e-18
(Q9Y3E2) RecName: Full=BolA-like protein 1;  &AF151901_1(AF15190...    95   3e-18
BT048027_1(BT048027|pid:none) Salmo salar clone ssal-rgb2-555-25...    94   7e-18
AX969343_1(AX969343|pid:none) Sequence 146 from Patent EP1104808.      92   1e-17
CP000469_924(CP000469|pid:none) Shewanella sp. ANA-3, complete g...    90   7e-17
(Q5RCE5) RecName: Full=BolA-like protein 1;  &CR858326_1(CR85832...    90   7e-17
protein update 2009. 3.25
PSORT 

 psg: 0.66  gvh: 0.13  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.21  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: plasma membrane

>> prediction for VSJ119 is nuc
5' end seq. ID VSJ119F
5' end seq. 
>VSJ119F.Seq
CCTTTTCAAAAAGTCAAATTTAATTAAAAAAAAAAATGACAACAATAGGACCAATTGAAA
ATGAAATTAAAGAATTATTAACAAAAGAATTAAATCCAATAAATTTAGAAATTATAAATG
AAAGTTATATGCATAATGTACCAAAAGGATCTGAATCACATTTTAAAGTTAAAATTGTTT
CTGAAAAATTTGAAACTTTATCAATGATTGAACAACACAGATTAGTAAATGAAATTTTAA
AAAATTTTATTGGAAATGGTAAAATACATGCATTAAGTATAACATCAAGAACTCCAACTC
AATGGAAAAAAAATAATCAAACAAAAATCAATGTTGATGATGATAAATCACCATCTTGTA
AAGGAGGTTTTGGTAAATAAAAAAAGAAATAATTATAAATATGTAAAAAAAAAA------
----
Length of 5' end seq. 414
3' end seq. ID VSJ119Z
3' end seq. 
>VSJ119Z.Seq
----------CCACGNGTCCGCCTTTTCAAAAAAGTCAAATTTAATTAAAAAAAAAAATG
ACAACAATAGGACCAATTGAAAATGAAATTAAAGAATTATTAACAAAAGAATTAAATCCA
ATAAATTTAGAAATTATAAATGAAAGTTATATGCATAATGTACCAAAAGGATCTGAATCA
CATTTTAAAGTTAAAATTGTTTCTGAAAAATTTGAAACTTTATCAATGATTGAACAACAC
AGATTAGTAAATGAAATTTTAAAAAATTTTATTGGAAATGGTAAAATACATGCATTAAGT
ATAACATCAAGAACTCCAACTCAAGGAAAAAAAATAATCAAACAAAAATCAATGTTGATG
ATGATAAATCACCATCTTGTAAAGGAGGTTTGGTAAATAAAAAAAGAA
Length of 3' end seq. 398
Connected seq. ID VSJ119P
Connected seq. 
>VSJ119P.Seq
CCTTTTCAAAAAGTCAAATTTAATTAAAAAAAAAAATGACAACAATAGGACCAATTGAAA
ATGAAATTAAAGAATTATTAACAAAAGAATTAAATCCAATAAATTTAGAAATTATAAATG
AAAGTTATATGCATAATGTACCAAAAGGATCTGAATCACATTTTAAAGTTAAAATTGTTT
CTGAAAAATTTGAAACTTTATCAATGATTGAACAACACAGATTAGTAAATGAAATTTTAA
AAAATTTTATTGGAAATGGTAAAATACATGCATTAAGTATAACATCAAGAACTCCAACTC
AATGGAAAAAAAATAATCAAACAAAAATCAATGTTGATGATGATAAATCACCATCTTGTA
AAGGAGGTTTTGGTAAATAAAAAAAGAAATAATTATAAATATGTAAAAAAAAAA------
----CCACGNGTCCGCCTTTTCAAAAAAGTCAAATTTAATTAAAAAAAAAAATGACAACA
ATAGGACCAATTGAAAATGAAATTAAAGAATTATTAACAAAAGAATTAAATCCAATAAAT
TTAGAAATTATAAATGAAAGTTATATGCATAATGTACCAAAAGGATCTGAATCACATTTT
AAAGTTAAAATTGTTTCTGAAAAATTTGAAACTTTATCAATGATTGAACAACACAGATTA
GTAAATGAAATTTTAAAAAATTTTATTGGAAATGGTAAAATACATGCATTAAGTATAACA
TCAAGAACTCCAACTCAAGGAAAAAAAATAATCAAACAAAAATCAATGTTGATGATGATA
AATCACCATCTTGTAAAGGAGGTTTGGTAAATAAAAAAAGAA
Length of connected seq. 812
Full length Seq ID -
Full length Seq. -
Length of full length seq. -