VSJ102
Library VS
(Link to library)
Clone ID VSJ102
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11567-1
Original site URL
Representative seq. ID VSJ102P
(Link to Original site)
Representative DNA sequence
>VSJ102 (VSJ102Q) /CSM/VS/VSJ1-A/VSJ102Q.Seq.d/
AGACAATTCCACATGGTGTCGTAGTGAAGTCAATGGAGTTACTCTATTTCATCTTTACAA
ATGTCACTAAAATATTGGGTATTCATAAGATTGAAAGTGGTACCAATGATCATTCTTCAC
CAAATGGTGGAATGGTTGGCTTTCAAACTACTCGTATTTTAATTAGAAAGATGGATGTAA
AAATCAATACGGCTTGGGTTAAATTTTGGTCAAAGATATTGGTGAAATTCTCTTCCCTAT
GTTTAGATCCAAAACCAGATATTAGAAACAACGCTATGACATTCCTTCAAAAGACAATAC
TCTCCTCATCGTTACAAGAGTTTTTACCACCAGGTAGATGGTTTGATTGTTTTGTTGATG
TGGTTTTCCAACTCTTAGATAATCTTAAAGAGAATTCAAGAGAAACCAATTTCGAAGATA
CAAGATTACGTGCTTCTGCTTTACTCTCAAAXXXXXXXXXXCACTCACAGNAGTGAGGAA
TTGAAACAACANCNATTATTATCACAAATAATTCGACANAACATTAATTCTCCAACAATT
ATTGATACTCCAAGTGTTTTACANCAATACCAACAACCACAACTACAACAACCACAACAA
CCTCAACAACCACAACAACAAGATCAAGAAGAATTTAATCCAATTATGTCAATTCCAATG
GTACCAATAATGCCAAATAATACAAATAATNATATAACAAATAAAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence
TIPHGVVVKSMELLYFIFTNVTKILGIHKIESGTNDHSSPNGGMVGFQTTRILIRKMDVK
INTAWVKFWSKILVKFSSLCLDPKPDIRNNAMTFLQKTILSSSLQEFLPPGRWFDCFVDV
VFQLLDNLKENSRETNFEDTRLRASALLS---

---THXSEELKQXXLLSQIIRXNINSPTIIDTPSVLXQYQQPQLQQPQQPQQPQQQDQEE
FNPIMSIPMVPIMPNNTNNXITNKK


Translated Amino Acid sequence (All Frames)
Frame A:
rqfhmvs**sqwsysisslqmslkywvfirlkvvpmiilhqmvewlafkllvf*lerwm*
ksirlglnfgqryw*nslpyv*iqnqilettl*hsfkrqysphryksfyhqvdglivllm
wfsns*iilkriqekpiskiqdyvlllysq---

---hsqx*giettxiiitnnstxh*fsnny*yskcftxipttttttttttstttttrsrr
i*snyvnsngtnnak*yk*xynk*k

Frame B:
dnstwcrsevngvtlfhlykch*nigys*d*kwyq*sfftkwwngwlsnysyfn*kdgck
nqyglg*ilvkdigeilfpmfrsktry*kqrydipskdntllivtrvfttr*mv*lfc*c
gfptlr*s*refkrnqfrrykitcfcftlk---

---THXSEELKQXXLLSQIIRXNINSPTIIDTPSVLXQYQQPQLQQPQQPQQPQQQDQEE
FNPIMSIPMVPIMPNNTNNXITNKK

Frame C:
TIPHGVVVKSMELLYFIFTNVTKILGIHKIESGTNDHSSPNGGMVGFQTTRILIRKMDVK
INTAWVKFWSKILVKFSSLCLDPKPDIRNNAMTFLQKTILSSSLQEFLPPGRWFDCFVDV
VFQLLDNLKENSRETNFEDTRLRASALLS---

---ltxvrn*nnxxyyhk*fdxtlilqqllilqvfyxntnnhnynnhnnlnnhnnkikkn
liqlcqfqwyq*cqiiqixi*qikk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ102 (VSJ102Q) /CSM/VS/VSJ1-A/VSJ102Q.Seq.d/ 1033 0.0
CHP688 (CHP688Q) /CSM/CH/CHP6-D/CHP688Q.Seq.d/ 149 7e-35
CHN506 (CHN506Q) /CSM/CH/CHN5-A/CHN506Q.Seq.d/ 149 7e-35
CFD671 (CFD671Q) /CSM/CF/CFD6-C/CFD671Q.Seq.d/ 145 1e-33
SSK296 (SSK296Q) /CSM/SS/SSK2-D/SSK296Q.Seq.d/ 40 0.045
SSH432 (SSH432Q) /CSM/SS/SSH4-B/SSH432Q.Seq.d/ 40 0.045
SSF381 (SSF381Q) /CSM/SS/SSF3-D/SSF381Q.Seq.d/ 40 0.045
AHP612 (AHP612Q) /CSM/AH/AHP6-A/AHP612Q.Seq.d/ 40 0.045
VSJ268 (VSJ268Q) /CSM/VS/VSJ2-C/VSJ268Q.Seq.d/ 36 0.70
VSI382 (VSI382Q) /CSM/VS/VSI3-D/VSI382Q.Seq.d/ 36 0.70

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

H99021|H99021.1 yx11d10.s1 Soares melanocyte 2NbHM Homo sapiens cDNA clone IMAGE:261427 3', mRNA sequence. 34 1.2 2
AC008229|AC008229.3 Drosophila melanogaster, chromosome 2R, region 51E-51F, BAC clone BACR16C17, complete sequence. 44 2.3 1
AL064305|AL064305.1 Drosophila melanogaster genome survey sequence TET3 end of BAC # BACR13F07 of RPCI-98 library from Drosophila melanogaster (fruit fly). 44 2.3 1
AC008137|AC008137.5 Drosophila melanogaster chromosome 2 clone BACR03N11 (D927) RPCI-98 03.N.11 map 51F-51F strain y; cn bw sp, *** SEQUENCING IN PROGRESS ***, 157 unordered pieces. 44 2.3 1
AL059350|AL059350.1 Drosophila melanogaster genome survey sequence T7 end of BAC # BACR12G03 of RPCI-98 library from Drosophila melanogaster (fruit fly). 44 2.3 1
AC015180|AC015180.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces. 44 2.3 1
AY052097|AY052097.1 Drosophila melanogaster SD04652 full length cDNA. 44 2.3 1
AL106922|AL106922.1 Drosophila melanogaster genome survey sequence T7 end of BAC BACN16E10 of DrosBAC library from Drosophila melanogaster (fruit fly). 44 2.3 1
AR271569|AR271569.1 Sequence 1 from patent US 6503729. 44 2.3 1
BY688820|BY688820.1 Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420002I08, 3' end partial sequence. 44 2.3 1
dna update 2003. 7.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9R1D7) RecName: Full=Golgi-specific brefeldin A-resistance gua... 65 2e-09
BC117682_1(BC117682|pid:none) Homo sapiens golgi-specific brefel... 65 2e-09
BC026621_1(BC026621|pid:none) Mus musculus golgi-specific brefel... 64 3e-09
BC014171_1(BC014171|pid:none) Homo sapiens golgi-specific brefel... 63 7e-09
(Q92538) RecName: Full=Golgi-specific brefeldin A-resistance gua... 63 7e-09
BC059883_1(BC059883|pid:none) Mus musculus golgi-specific brefel... 63 7e-09
D87435_1(D87435|pid:none) Human mRNA for KIAA0248 gene, partial ... 63 7e-09
AB383818_1(AB383818|pid:none) Synthetic construct DNA, clone: pF... 63 7e-09
AB009054_21(AB009054|pid:none) Arabidopsis thaliana genomic DNA,... 57 5e-07
AM920436_701(AM920436|pid:none) Penicillium chrysogenum Wisconsi... 54 6e-06
protein update 2009. 3.25
PSORT

psg: 0.83 gvh: 0.47 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VSJ102 is cyt

5' end seq. ID VSJ102F
5' end seq.
>VSJ102F.Seq
AGACAATTCCACATGGTGTCGTAGTGAAGTCAATGGAGTTACTCTATTTCATCTTTACAA
ATGTCACTAAAATATTGGGTATTCATAAGATTGAAAGTGGTACCAATGATCATTCTTCAC
CAAATGGTGGAATGGTTGGCTTTCAAACTACTCGTATTTTAATTAGAAAGATGGATGTAA
AAATCAATACGGCTTGGGTTAAATTTTGGTCAAAGATATTGGTGAAATTCTCTTCCCTAT
GTTTAGATCCAAAACCAGATATTAGAAACAACGCTATGACATTCCTTCAAAAGACAATAC
TCTCCTCATCGTTACAAGAGTTTTTACCACCAGGTAGATGGTTTGATTGTTTTGTTGATG
TGGTTTTCCAACTCTTAGATAATCTTAAAGAGAATTCAAGAGAAACCAATTTCGAAGATA
CAAGATTACGTGCTTCTGCTTTACTCTCAAA----------
Length of 5' end seq. 451
3' end seq. ID VSJ102Z
3' end seq.
>VSJ102Z.Seq
----------CACTCACAGNAGTGAGGAATTGAAACAACANCNATTATTATCACAAATAA
TTCGACANAACATTAATTCTCCAACAATTATTGATACTCCAAGTGTTTTACANCAATACC
AACAACCACAACTACAACAACCACAACAACCTCAACAACCACAACAACAAGATCAAGAAG
AATTTAATCCAATTATGTCAATTCCAATGGTACCAATAATGCCAAATAATACAAATAATN
ATATAACAAATAAAAAAA
Length of 3' end seq. 248
Connected seq. ID VSJ102P
Connected seq.
>VSJ102P.Seq
AGACAATTCCACATGGTGTCGTAGTGAAGTCAATGGAGTTACTCTATTTCATCTTTACAA
ATGTCACTAAAATATTGGGTATTCATAAGATTGAAAGTGGTACCAATGATCATTCTTCAC
CAAATGGTGGAATGGTTGGCTTTCAAACTACTCGTATTTTAATTAGAAAGATGGATGTAA
AAATCAATACGGCTTGGGTTAAATTTTGGTCAAAGATATTGGTGAAATTCTCTTCCCTAT
GTTTAGATCCAAAACCAGATATTAGAAACAACGCTATGACATTCCTTCAAAAGACAATAC
TCTCCTCATCGTTACAAGAGTTTTTACCACCAGGTAGATGGTTTGATTGTTTTGTTGATG
TGGTTTTCCAACTCTTAGATAATCTTAAAGAGAATTCAAGAGAAACCAATTTCGAAGATA
CAAGATTACGTGCTTCTGCTTTACTCTCAAA----------CACTCACAGNAGTGAGGAA
TTGAAACAACANCNATTATTATCACAAATAATTCGACANAACATTAATTCTCCAACAATT
ATTGATACTCCAAGTGTTTTACANCAATACCAACAACCACAACTACAACAACCACAACAA
CCTCAACAACCACAACAACAAGATCAAGAAGAATTTAATCCAATTATGTCAATTCCAATG
GTACCAATAATGCCAAATAATACAAATAATNATATAACAAATAAAAAAA
Length of connected seq. 699
Full length Seq ID -
Full length Seq. -
Length of full length seq. -