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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI877
Library VS
(Link to library)
Clone ID VSI877
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14989-1
Original site URL
Representative seq. ID VSI877P
(Link to Original site)
Representative DNA sequence 
>VSI877 (VSI877Q) /CSM/VS/VSI8-D/VSI877Q.Seq.d/
GAAAAATTTCACACATAACAAAATTTTTATTAATATTGTCAACAAATATTAAATATTAAA
TATTAAAATTCAGAATTAAAATTAAATAGTATAAAGAAAAAAAAAAANTAAGGTAAAAAA
AAAAXXXXXXXXXXTCATTAGCATTTGGTTCATTANTCATTGCTTTTATNGAATTTATGG
CATTCATGTTANGTGTCTGTAAGAACAGTAACGCTACCANCAAATTGGTTGTAATGGTAG
TATCTTGTNTTCAATGTATTTTGGGTTGTATTGAATCAATCGTTCGTTGGATCAACAAAT
TTGGTTANATNTANGTAGCAATGCATGGTCATTCATTCTGTACCTCAACAAAGGAATGTT
TCGATCTCATCTCTAGAAATATGTTCAATGCTGTCATTATGGATTTCATTGGTGGTTTGG
TTTTATTATTAGGTAAGATTTTGGGTTCAGCTGCTTCTGCTCTCTTCACCACTGCACTCT
TGTATGGTATGGGTAAATCTCTCAATCCAATCACTATTGCTCTCTCTGCAATTTTCGCTT
TTTGTATCTTCAATCTTTTCACTCATATC
sequence update 2001. 3.22
Translated Amino Acid sequence 
knfthnkifinivnky*ilnikiqn*n*iv*RKKKXKVKKK---

---SLAFGSLXIAFXEFMAFMLXVCKNSNATXKLVVMVVSCXQCILGCIESIVRWINKFG
XXXVAMHGHSFCTSTKECFDLISRNMFNAVIMDFIGGLVLLLGKILGSAASALFTTALLY
GMGKSLNPITIALSAIFAFCIFNLFTHI
Translated Amino Acid sequence (All Frames) 
Frame A:
ekfht*qnfy*ycqqilniky*nselklnsikkkkx*gkkk---

---SLAFGSLXIAFXEFMAFMLXVCKNSNATXKLVVMVVSCXQCILGCIESIVRWINKFG
XXXVAMHGHSFCTSTKECFDLISRNMFNAVIMDFIGGLVLLLGKILGSAASALFTTALLY
GMGKSLNPITIALSAIFAFCIFNLFTHI

Frame B:
knfthnkifinivnky*ilnikiqn*n*iv*RKKKXKVKKK---

---h*hlvhxslllxnlwhscxvsvrtvtlpxnwl*w*ylvfnvfwvvlnqsfvgstnlv
xxx*qcmvihsvpqqrnvsissleicsmlslwislvvwfyy*vrfwvqllllssplhscm
vwvnlsiqslllslqfslfvssifsli

Frame C:
kishitkfllilstniky*ilkfrikik*ykekkkxr*kk---

---isiwfixhcfyxiygihvxcl*eq*ryxqigcngsilxsmyfgly*inrsldqqiwl
xxxsnawsfilylnkgmfrshl*kyvqcchygfhwwfgfiir*dfgfscfcslhhctlvw
yg*isqsnhycslcnfrflylqsfhsy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI877 (VSI877Q) /CSM/VS/VSI8-D/VSI877Q.Seq.d/                        815   0.0
SSA118 (SSA118Q) /CSM/SS/SSA1-A/SSA118Q.Seq.d/                        815   0.0
AFG833 (AFG833Q) /CSM/AF/AFG8-B/AFG833Q.Seq.d/                        809   0.0
AFK551 (AFK551Q) /CSM/AF/AFK5-C/AFK551Q.Seq.d/                        797   0.0
SSD161 (SSD161Q) /CSM/SS/SSD1-C/SSD161Q.Seq.d/                        767   0.0
AFN286 (AFN286Q) /CSM/AF/AFN2-D/AFN286Q.Seq.d/                        763   0.0
VFE209 (VFE209Q) /CSM/VF/VFE2-A/VFE209Q.Seq.d/                        759   0.0
SSC258 (SSC258Q) /CSM/SS/SSC2-C/SSC258Q.Seq.d/                        741   0.0
SSL739 (SSL739Q) /CSM/SS/SSL7-B/SSL739Q.Seq.d/                        696   0.0
SFE605 (SFE605Q) /CSM/SF/SFE6-A/SFE605Q.Seq.d/                        656   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC068797|AC068797.29 Homo sapiens 12 BAC RP1-81P11 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    38  1.6  3
BE881198|BE881198.1 601492071F1 NIH_MGC_69 Homo sapiens cDNA clone IMAGE:3894353 5', mRNA sequence.    44  1.8  1
AX348978|AX348978.1 Sequence 436 from Patent WO0202807.           44  1.8  1
AX345979|AX345979.1 Sequence 1050 from Patent WO0200928.          44  1.8  1
AX281412|AX281412.1 Sequence 76 from Patent WO0177376.            44  1.8  1
AC115840|AC115840.4 Mus musculus clone RP24-230J5, WORKING DRAFT SEQUENCE, 3 ordered pieces.    42  3.8  2
AC096614|AC096614.7 Rattus norvegicus clone CH230-123D6, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    42  5.1  2
AC094358|AC094358.6 Rattus norvegicus clone CH230-3C15, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44  5.7  4
BU326454|BU326454.1 603490186F1 CSEQCHN63 Gallus gallus cDNA clone ChEST391k21 5', mRNA sequence.    38  6.5  2
AC098139|AC098139.5 Rattus norvegicus clone CH230-168I11, WORKING DRAFT SEQUENCE, 2 unordered pieces.    42  7.2  1
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54IJ2) RecName: Full=CTL-like protein DDB_G0288717;                 218   1e-55
(B5X3W7) RecName: Full=Choline transporter-like protein 2; AltNa...    64   3e-09
BC090749_1(BC090749|pid:none) Danio rerio wu:fc26c03, mRNA (cDNA...    64   3e-09
(Q7SYC9) RecName: Full=Choline transporter-like protein 2; AltNa...    62   8e-09
BT059118_1(BT059118|pid:none) Salmo salar clone ssal-rgf-526-146...    62   8e-09
(Q6IP59) RecName: Full=Choline transporter-like protein 2; AltNa...    61   2e-08
(A5D7H3) RecName: Full=Choline transporter-like protein 2; AltNa...    61   2e-08
(Q8BY89) RecName: Full=Choline transporter-like protein 2; AltNa...    60   3e-08
(B4F795) RecName: Full=Choline transporter-like protein 2; AltNa...    60   3e-08
(Q810F1) RecName: Full=Choline transporter-like protein 2; AltNa...    60   4e-08
protein update 2009. 3.25
PSORT 

 psg: 0.93  gvh: 0.68  alm: 0.24  top: 0.60  tms: 0.13  mit: 0.31  mip: 0.11
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 16.0 %: nuclear
	 12.0 %: vacuolar
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for VSI877 is end
5' end seq. ID VSI877F
5' end seq. 
>VSI877F.Seq
GAAAAATTTCACACATAACAAAATTTTTATTAATATTGTCAACAAATATTAAATATTAAA
TATTAAAATTCAGAATTAAAATTAAATAGTATAAAGAAAAAAAAAAANTAAGGTAAAAAA
AAAA----------
Length of 5' end seq. 124
3' end seq. ID VSI877Z
3' end seq. 
>VSI877Z.Seq
----------TCATTAGCATTTGGTTCATTANTCATTGCTTTTATNGAATTTATGGCATT
CATGTTANGTGTCTGTAAGAACAGTAACGCTACCANCAAATTGGTTGTAATGGTAGTATC
TTGTNTTCAATGTATTTTGGGTTGTATTGAATCAATCGTTCGTTGGATCAACAAATTTGG
TTANATNTANGTAGCAATGCATGGTCATTCATTCTGTACCTCAACAAAGGAATGTTTCGA
TCTCATCTCTAGAAATATGTTCAATGCTGTCATTATGGATTTCATTGGTGGTTTGGTTTT
ATTATTAGGTAAGATTTTGGGTTCAGCTGCTTCTGCTCTCTTCACCACTGCACTCTTGTA
TGGTATGGGTAAATCTCTCAATCCAATCACTATTGCTCTCTCTGCAATTTTCGCTTTTTG
TATCTTCAATCTTTTCACTCATATC
Length of 3' end seq. 435
Connected seq. ID VSI877P
Connected seq. 
>VSI877P.Seq
GAAAAATTTCACACATAACAAAATTTTTATTAATATTGTCAACAAATATTAAATATTAAA
TATTAAAATTCAGAATTAAAATTAAATAGTATAAAGAAAAAAAAAAANTAAGGTAAAAAA
AAAA----------TCATTAGCATTTGGTTCATTANTCATTGCTTTTATNGAATTTATGG
CATTCATGTTANGTGTCTGTAAGAACAGTAACGCTACCANCAAATTGGTTGTAATGGTAG
TATCTTGTNTTCAATGTATTTTGGGTTGTATTGAATCAATCGTTCGTTGGATCAACAAAT
TTGGTTANATNTANGTAGCAATGCATGGTCATTCATTCTGTACCTCAACAAAGGAATGTT
TCGATCTCATCTCTAGAAATATGTTCAATGCTGTCATTATGGATTTCATTGGTGGTTTGG
TTTTATTATTAGGTAAGATTTTGGGTTCAGCTGCTTCTGCTCTCTTCACCACTGCACTCT
TGTATGGTATGGGTAAATCTCTCAATCCAATCACTATTGCTCTCTCTGCAATTTTCGCTT
TTTGTATCTTCAATCTTTTCACTCATATC
Length of connected seq. 559
Full length Seq ID -
Full length Seq. -
Length of full length seq. -