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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI868
Library VS
(Link to library)
Clone ID VSI868
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15196-1
Original site URL
Representative seq. ID VSI868P
(Link to Original site)
Representative DNA sequence 
>VSI868 (VSI868Q) /CSM/VS/VSI8-C/VSI868Q.Seq.d/
CCCGCGTCCGCCCCGCGTCCGCCCCGCGTCCGATACAAATAAATAAATAAAAAAGTAAAA
AAAAAAXXXXXXXXXXATGAATCAGTAAAGAGTGCAGTAGAAGAGACTATTAAACAGTTT
GGTAGAATTNATGTGNTAGTAAATAACGCTGGTTATGGTTTAGTAGGTTCAATTNAAGAG
TTATCAGATTCAGACGTTAGAAAGATATATGATGTNAATGTATTTGGTGTTTTGAATTTA
TTAAGAAATTCAACACCACATTTTAGAAAACAAAAATCAGGTTTAATAATTAACATATCC
TNTCAAATGGGTTGGGATAATATGGAATATTACTCAGCATANAGTTCAACTAAACATGCA
GTTAATGCAATCACATTCTNTGCACAAAAAGAGTTAAAAGCATTTGGAGTGAATGTAATA
TTAGTTAGTCCAGGTGGATTTAGNNCTGGTTTTGTTGCTGGTCAACAATCAAACTTTCAA
GTACCNTCAAAATCAATTGANGAACACNCAACTCAATCANTCATTGNAATGTTNAATAAA
CACTCACCATATTCAAAAGGCGNTCCTGAAAAAGCAGCTGNACTCNTAATTAAANTNCCN
ACCANTGAAGAATNACCNNATNATTTATTCANTGGCNCTGATTC
sequence update 2001. 3.22
Translated Amino Acid sequence 
pasaprpprvryk*INKKVKKK---

---ESVKSAVEETIKQFGRIXVXVNNAGYGLVGSIXELSDSDVRKIYDVNVFGVLNLLRN
STPHFRKQKSGLIINISXQMGWDNMEYYSAXSSTKHAVNAITFXAQKELKAFGVNVILVS
PGGFXXGFVAGQQSNFQVPSKSIXEHXTQSXIXMXNKHSPYSKGXPEKAAXLXIKXPTXE
EXPXXLFXGXD
Translated Amino Acid sequence (All Frames) 
Frame A:
pasaprpprvryk*INKKVKKK---

---mnq*rvq*krllnslvexmx**itlvmv**vqxksyqiqtlerymmxmylvf*iy*e
iqhhilenknqv**ltypxkwvgiiwnitqhxvqlnmqlmqshsxhkks*khle*m*y*l
vqvdlxlvlllvnnqtfkyxqnqlxntqlnxslxcxinthhiqkaxlkkqlxs*lxxxpx
knxxxiysxali

Frame B:
prpprvrpasdtnk*ikk*kk---

---*iskecsrrdy*tvw*nxcxsk*rwlwfsrfnxrvirfrr*kdi*cxciwcfefikk
fnttf*ktkirfnn*hilsnglg*ygillsixfn*tcs*cnhilctkrvksiwsecnis*
srwi*xwfccwstiklsstxkin*xtxnsixhxnvx*tltifkrrs*kssxtxn*xxxx*
rxtxxfixwx*f

Frame C:
rvrpasaprpiqink*kskkk---

---ESVKSAVEETIKQFGRIXVXVNNAGYGLVGSIXELSDSDVRKIYDVNVFGVLNLLRN
STPHFRKQKSGLIINISXQMGWDNMEYYSAXSSTKHAVNAITFXAQKELKAFGVNVILVS
PGGFXXGFVAGQQSNFQVPSKSIXEHXTQSXIXMXNKHSPYSKGXPEKAAXLXIKXPTXE
EXPXXLFXGXD
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI868 (VSI868Q) /CSM/VS/VSI8-C/VSI868Q.Seq.d/                        959   0.0
VSB862 (VSB862Q) /CSM/VS/VSB8-C/VSB862Q.Seq.d/                        928   0.0
VSI294 (VSI294Q) /CSM/VS/VSI2-D/VSI294Q.Seq.d/                        926   0.0
FC-BJ05 (FC-BJ05Q) /CSM/FC/FC-BJ/FC-BJ05Q.Seq.d/                      920   0.0
VSB368 (VSB368Q) /CSM/VS/VSB3-C/VSB368Q.Seq.d/                        866   0.0
VSH182 (VSH182Q) /CSM/VS/VSH1-D/VSH182Q.Seq.d/                        858   0.0
VSF157 (VSF157Q) /CSM/VS/VSF1-C/VSF157Q.Seq.d/                        827   0.0
VSH318 (VSH318Q) /CSM/VS/VSH3-A/VSH318Q.Seq.d/                        801   0.0
VSA831 (VSA831Q) /CSM/VS/VSA8-B/VSA831Q.Seq.d/                        759   0.0
VSE379 (VSE379Q) /CSM/VS/VSE3-D/VSE379Q.Seq.d/                        749   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    92  4e-25  4
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    60  5e-09  5
BQ640509|BQ640509.1 he29f03.y1 Human Retina cDNA (Un-normalized, unamplified): hd/he Homo sapiens cDNA clone he29f03 5', mRNA sequence.    64  2e-06  1
BI892435|BI892435.1 ZF637-3-001690 Zebrafish shield stage whole embryo cDNA library MPMGp637 Danio rerio cDNA clone MPMGp637_20A24;MPMGp637A2420 5', mRNA sequence.    64  2e-06  1
BI892100|BI892100.1 ZF637-3-001355 Zebrafish shield stage whole embryo cDNA library MPMGp637 Danio rerio cDNA clone MPMGp637_19K24;MPMGp637K2419 5', mRNA sequence.    64  2e-06  1
CB586470|CB586470.1 AMGNNUC:NRDG1-00204-F1-A nrdg1 (10855) Rattus norvegicus cDNA clone nrdg1-00204-f1 5', mRNA sequence.    64  2e-06  1
BI887491|BI887491.1 ZF637-1-001746 Zebrafish shield stage whole embryo cDNA library MPMGp637 Danio rerio cDNA clone MPMGP637_2M24;MPMGP637M242 5', mRNA sequence.    64  2e-06  1
BI889320|BI889320.1 ZF637-2-001075 Zebrafish shield stage whole embryo cDNA library MPMGp637 Danio rerio cDNA clone MPMGp637_23C2;MPMGp637C0223 5', mRNA sequence.    62  9e-06  1
CD053209|CD053209.1 LITHZF000637 Zebrafish shield stage whole embryo cDNA library MPMGp637 Danio rerio cDNA clone MPMGp637L2114 5', mRNA sequence.    62  9e-06  1
BI888788|BI888788.1 ZF637-2-000543 Zebrafish shield stage whole embryo cDNA library MPMGp637 Danio rerio cDNA clone MPMGp637_21D15;MPMGp637D1521 5', mRNA sequence.    60  3e-05  1
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_71(AC116963|pid:none) Dictyostelium discoideum chromoso...   147   3e-34
AC116960_60(AC116960|pid:none) Dictyostelium discoideum chromoso...   133   5e-30
CP000960_881(CP000960|pid:none) Burkholderia cenocepacia MC0-3 c...   117   2e-25
CP000685_1834(CP000685|pid:none) Flavobacterium johnsoniae UW101...   115   1e-24
AP009387_68(AP009387|pid:none) Burkholderia multivorans ATCC 176...   105   1e-21
CP001037_530(CP001037|pid:none) Nostoc punctiforme PCC 73102, co...   103   5e-21
CP000680_2191(CP000680|pid:none) Pseudomonas mendocina ymp, comp...   100   6e-20
AL590463_43(AL590463|pid:none) Streptomyces coelicolor plasmid S...    99   8e-20
CP000629_710(CP000629|pid:none) Agrobacterium radiobacter K84 ch...    99   8e-20
CP000284_588(CP000284|pid:none) Methylobacillus flagellatus KT, ...    99   1e-19
protein update 2009. 3.25
PSORT 

 psg: 0.58  gvh: 0.37  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  8.0 %: vesicles of secretory system

>> prediction for VSI868 is cyt
5' end seq. ID VSI868F
5' end seq. 
>VSI868F.Seq
CCCGCGTCCGCCCCGCGTCCGCCCCGCGTCCGATACAAATAAATAAATAAAAAAGTAAAA
AAAAAA----------
Length of 5' end seq. 66
3' end seq. ID VSI868Z
3' end seq. 
>VSI868Z.Seq
----------ATGAATCAGTAAAGAGTGCAGTAGAAGAGACTATTAAACAGTTTGGTAGA
ATTNATGTGNTAGTAAATAACGCTGGTTATGGTTTAGTAGGTTCAATTNAAGAGTTATCA
GATTCAGACGTTAGAAAGATATATGATGTNAATGTATTTGGTGTTTTGAATTTATTAAGA
AATTCAACACCACATTTTAGAAAACAAAAATCAGGTTTAATAATTAACATATCCTNTCAA
ATGGGTTGGGATAATATGGAATATTACTCAGCATANAGTTCAACTAAACATGCAGTTAAT
GCAATCACATTCTNTGCACAAAAAGAGTTAAAAGCATTTGGAGTGAATGTAATATTAGTT
AGTCCAGGTGGATTTAGNNCTGGTTTTGTTGCTGGTCAACAATCAAACTTTCAAGTACCN
TCAAAATCAATTGANGAACACNCAACTCAATCANTCATTGNAATGTTNAATAAACACTCA
CCATATTCAAAAGGCGNTCCTGAAAAAGCAGCTGNACTCNTAATTAAANTNCCNACCANT
GAAGAATNACCNNATNATTTATTCANTGGCNCTGATTC
Length of 3' end seq. 568
Connected seq. ID VSI868P
Connected seq. 
>VSI868P.Seq
CCCGCGTCCGCCCCGCGTCCGCCCCGCGTCCGATACAAATAAATAAATAAAAAAGTAAAA
AAAAAA----------ATGAATCAGTAAAGAGTGCAGTAGAAGAGACTATTAAACAGTTT
GGTAGAATTNATGTGNTAGTAAATAACGCTGGTTATGGTTTAGTAGGTTCAATTNAAGAG
TTATCAGATTCAGACGTTAGAAAGATATATGATGTNAATGTATTTGGTGTTTTGAATTTA
TTAAGAAATTCAACACCACATTTTAGAAAACAAAAATCAGGTTTAATAATTAACATATCC
TNTCAAATGGGTTGGGATAATATGGAATATTACTCAGCATANAGTTCAACTAAACATGCA
GTTAATGCAATCACATTCTNTGCACAAAAAGAGTTAAAAGCATTTGGAGTGAATGTAATA
TTAGTTAGTCCAGGTGGATTTAGNNCTGGTTTTGTTGCTGGTCAACAATCAAACTTTCAA
GTACCNTCAAAATCAATTGANGAACACNCAACTCAATCANTCATTGNAATGTTNAATAAA
CACTCACCATATTCAAAAGGCGNTCCTGAAAAAGCAGCTGNACTCNTAATTAAANTNCCN
ACCANTGAAGAATNACCNNATNATTTATTCANTGGCNCTGATTC
Length of connected seq. 634
Full length Seq ID -
Full length Seq. -
Length of full length seq. -