VSI829
Library VS
(Link to library)
Clone ID VSI829
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15444-1
Original site URL
Representative seq. ID VSI829E
(Link to Original site)
Representative DNA sequence
>VSI829 (VSI829Q) /CSM/VS/VSI8-B/VSI829Q.Seq.d/
CAGAATGTCTCAAAAACAAACTAAACCAGCTGCTGCCACCAAAGCTGCTCCAGCCAAAAC
CGCTGTTGCCACCACCAAATCAAAGAAAGTCGTCAAGAAGGGTGAAAAGAAAATCAAAAC
TAGAACCTTATTCAACGCCTTATACACCAAAAACGTCAAAAACTTTGGTACTGGTTTCGG
TGTTCAACCAAAGAGAGATTTAACTCATTTCACTCACTGGCCAAGATACATCAAATTACA
AAGACAAAGACGTGTTTTATTAAAGAGATTAAAGGTTCCACCAACAATCAACCAATTCAC
CCGTGTCTTTGACAAAAACACCGNNNNCCATTTATTCAAATTATTAGATAAATACAGACC
AGAAGAAGCCTCAGTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCAC
TCCAAAAGGTCAAGCTGCTCCAAAAAGCTGAAAAACCAGTCCAACACCTTACGTTTCGGT
ATTGACTCTGTCACCAAATTAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCAC
GATGTTGACCCAGTTGAACTCGTCTTATACTTACCAACCCTCTGCAGACGTATGGATGTC
CCATACTGTATCGTCAAATCTAAATCCAGATTAGGTGAATTAGTTCACATGAGAAACGCT
TCATGTGTTGCCCTCACTGGTGTCAACTCTGCTGACTCAAACGAACTCGCTTTATTAGTT
GAATCCGCCAAACAAATGTTCAACAATAACAGTGAACACAGAAAGACCTGGGGTGGTAAC
ACTTTATCTGGTCCAGCTCGTGCTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAGAA
AGTTTAGCCAAATCAAAGATNCTAAGCTCTTTAATAGTTTAGCGAGACNCTCANNCTTTT
TTAAATA
sequence update 2001. 3.26
Translated Amino Acid sequence
qnvsktn*tscchqscssqnrcchhqikesrqeg*kenqn*nliqrlihqkrqklwywfr
cstkerfnsfhslakihqitktktcfikeikgstnnqpihpcl*qkhrxpfiqiir*iqt
rrslsqes*iienr*SPCCHSKRSSCSKKLKNQSNTLRFGIDSVTKLIEKKKAKLVVIAH
DVDPVELVLYLPTLCRRMDVPYCIVKSKSRLGELVHMRNASCVALTGVNSADSNELALLV
ESAKQMFNNNSEHRKTWGGNTLSGPARAILAKRQKAEAKESLAKSKXLSSLIV*rdxxxf
ln


Translated Amino Acid sequence (All Frames)
Frame A:
qnvsktn*tscchqscssqnrcchhqikesrqeg*kenqn*nliqrlihqkrqklwywfr
cstkerfnsfhslakihqitktktcfikeikgstnnqpihpcl*qkhrxpfiqiir*iqt
rrslsqes*iienr*SPCCHSKRSSCSKKLKNQSNTLRFGIDSVTKLIEKKKAKLVVIAH
DVDPVELVLYLPTLCRRMDVPYCIVKSKSRLGELVHMRNASCVALTGVNSADSNELALLV
ESAKQMFNNNSEHRKTWGGNTLSGPARAILAKRQKAEAKESLAKSKXLSSLIV*rdxxxf
ln


Frame B:
rmsqkqtkpaaatkaapaktavattkskkvvkkgekkiktrtlfnalytknvknfgtgfg
vqpkrdlthfthwpryiklqrqrrvllkrlkvpptinqftrvfdkntxxhlfklldkyrp
eeasvkkarllkiaearaatpkgqaapks*ktsptpyvsvltlspn*skrrkln*sslpt
mltqlnssytyqpsadvwmshtvssnlnpd*vn*ft*etlhvlpslvstlltqtnsly*l
nppnkcstitvnterpgvvtlylvqlvls*pnvkklkpkkv*pnqrx*al**fsetlxlf
*i


Frame C:
eclknklnqllppkllqpkpllpppnqrkssrrvkrksklepystpytpktsktlvlvsv
fnqrei*lisltgqdtsnykdkdvfy*rd*rfhqqstnspvsltktpxxiysny*intdq
kkpqsrkldy*kslkpvlplqkvkllqkaekpvqhltfry*lchqinrkees*isrhcpr
c*ps*trliltnplqtygcpilyrqi*iqir*isshekrfmccphwcqlc*lkrtrfis*
irqtnvqq*q*tqkdlgw*hfiwssscylsqtsks*sqrkfsqikdxklfnslarxsxff
k


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSI829 (VSI829Q) /CSM/VS/VSI8-B/VSI829Q.Seq.d/ 1750 0.0
VSJ540 (VSJ540Q) /CSM/VS/VSJ5-B/VSJ540Q.Seq.d/ 1693 0.0
VSF364 (VSF364Q) /CSM/VS/VSF3-C/VSF364Q.Seq.d/ 1641 0.0
VSG491 (VSG491Q) /CSM/VS/VSG4-D/VSG491Q.Seq.d/ 1637 0.0
VSK343 (VSK343Q) /CSM/VS/VSK3-B/VSK343Q.Seq.d/ 1560 0.0
FC-187 (FC-187Q) /CSM/CG/CG-FC/FC-187Q.Seq.d/ 1407 0.0
VHC562 (VHC562Q) /CSM/VH/VHC5-C/VHC562Q.Seq.d/ 1356 0.0
FC-BA22 (FC-BA22Q) /CSM/FC/FC-BA/FC-BA22Q.Seq.d/ 1352 0.0
FC-IC1346 (FC-IC1346Q) /CSM/FC-IC/FC-IC1346Q.Seq.d/ 1336 0.0
FC-IC1585 (FC-IC1585Q) /CSM/FC-IC/FC-IC1585Q.Seq.d/ 1330 0.0

own update 2003. 1.10
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence. 846 0.0 5
BQ476680|BQ476680.1 curculio4h01.g Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 3', mRNA sequence. 54 2e-08 3
BQ476431|BQ476431.1 curculio4h01.b Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 5', mRNA sequence. 54 1e-06 2
BQ623728|BQ623728.1 USDA-FP_00819 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00819 5', mRNA sequence. 56 5e-06 2
CA755632| (Y15171) ribosomal protein L7a [Takifugu rubripes], mRNA sequence. 60 5e-05 1
AJ457342|AJ457342.1 Oryzias latipes EST, clone 631-134-12-N. 38 4e-04 3
CA845440|CA845440.1 hab99h11.y1 Fugu hgmpD adult gut Takifugu rubripes cDNA clone IMAGE:6356972 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence. 46 8e-04 2
CA330639|CA330639.1 hab08d06.y1 Fugu hgmpJ adult kidney Takifugu rubripes cDNA clone 6362938 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence. 46 0.001 2
CA846589|CA846589.1 hab83c10.y1 Fugu hgmpC adult gill Takifugu rubripes cDNA clone IMAGE:6355194 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence. 46 0.001 2
CA330747|CA330747.1 haa65h09.y2 Fugu hgmpF adult brain Takifugu rubripes cDNA clone 6358888 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence. 46 0.001 2
dna update 2003. 7.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54ZD1) RecName: Full=60S ribosomal protein L7a; 234 e-108
AY769275_1(AY769275|pid:none) Bombyx mori ribosomal protein L7A ... 140 5e-54
DQ440224_1(DQ440224|pid:none) Aedes aegypti clone AET-254 riboso... 137 2e-53
EU259814_1(EU259814|pid:none) Spodoptera exigua ribosomal protei... 134 7e-52
EU934303_1(EU934303|pid:none) TSA: Anopheles darlingi AD-165 60S... 134 2e-51
(O76732) RecName: Full=60S ribosomal protein L7a; 136 6e-51
BC118908_1(BC118908|pid:none) Xenopus tropicalis hypothetical pr... 129 2e-50
BC076693_1(BC076693|pid:none) Xenopus tropicalis hypothetical pr... 129 2e-50
(Q2TBQ5) RecName: Full=60S ribosomal protein L7a; &BC109810_1(B... 131 3e-50
BC052339_1(BC052339|pid:none) Mus musculus ribosomal protein L7a... 130 4e-50
protein update 2009. 3.25
PSORT

psg: 0.55 gvh: 0.40 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.43 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: cytoplasmic
20.0 %: mitochondrial
4.0 %: nuclear

>> prediction for VSI829 is cyt

5' end seq. ID VSI829F
5' end seq.
>VSI829F.Seq
CAGAATGTCTCAAAAACAAACTAAACCAGCTGCTGCCACCAAAGCTGCTCCAGCCAAAAC
CGCTGTTGCCACCACCAAATCAAAGAAAGTCGTCAAGAAGGGTGAAAAGAAAATCAAAAC
TAGAACCTTATTCAACGCCTTATACACCAAAAACGTCAAAAACTTTGGTACTGGTTTCGG
TGTTCAACCAAAGAGAGATTTAACTCATTTCACTCACTGGCCAAGATACATCAAATTACA
AAGACAAAGACGTGTTTTATTAAAGAGATTAAAGGTTCCACCAACAATCAACCAATTCAC
CCGTGTCTTTGACAAAAACACCGCTGTCCATTTATTCAAATTATTAGATAAATACAGACC
AGAAGAAGCCTCAGTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCAC
TCCAAAAGGTCAAGCTGCTCCAAAAGCTGAAAAACCAGTCCAACACCTTACGTTTCGGTA
TTGACTCTGTCACCAAATTAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACG
ATGTTGACCCAGTTGAACTCGTCTTATACTTACCAACCCTCTGCA----------
Length of 5' end seq. 585
3' end seq. ID VSI829Z
3' end seq.
>VSI829Z.Seq
----------TTTGACAAAAACACCGGCTGCCATTTATTCAAATTATTAGATAAATACAG
ACCAGAAGAAGCCTCAGTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGC
CACTCCAAAAGGTCAAGCTGCTCCAAAAAGCTGAAAAACCAGTCCAACACTTACGTTTCG
GTATTGACTCTGTCACCAAATTAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCC
ACGATGTTGACCCAGTTGAACTCGTCTTATACTTACCAACCCTCTGCAGACGTATGGATG
TCCCATACTGTATCGTCAAATCTAAATCCAGATTAGGTGAATTAGTTCACATGAGAAACG
CTTCATGTGTTGCCCTCACTGGTGTCAACTCTGCTGACTCAAACGAACTCGCTTTATTAG
TTGAATCCGCCAAACAAATGTTCAACAATAACAGTGAACACAGAAAGACCTGGGGTGGTA
ACACTTTATCTGGTCCAGCTCGTGCTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAG
AAAGTTTAGCCAAATCAAAGATNCTAAGCTCTTTAATAGTTTAGCGAGACNCTCANNCTT
TTTTAAATA
Length of 3' end seq. 599
Connected seq. ID VSI829P
Connected seq.
>VSI829P.Seq
CAGAATGTCTCAAAAACAAACTAAACCAGCTGCTGCCACCAAAGCTGCTCCAGCCAAAAC
CGCTGTTGCCACCACCAAATCAAAGAAAGTCGTCAAGAAGGGTGAAAAGAAAATCAAAAC
TAGAACCTTATTCAACGCCTTATACACCAAAAACGTCAAAAACTTTGGTACTGGTTTCGG
TGTTCAACCAAAGAGAGATTTAACTCATTTCACTCACTGGCCAAGATACATCAAATTACA
AAGACAAAGACGTGTTTTATTAAAGAGATTAAAGGTTCCACCAACAATCAACCAATTCAC
CCGTGTCTTTGACAAAAACACCGCTGTCCATTTATTCAAATTATTAGATAAATACAGACC
AGAAGAAGCCTCAGTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCAC
TCCAAAAGGTCAAGCTGCTCCAAAAGCTGAAAAACCAGTCCAACACCTTACGTTTCGGTA
TTGACTCTGTCACCAAATTAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACG
ATGTTGACCCAGTTGAACTCGTCTTATACTTACCAACCCTCTGCA----------TTTGA
CAAAAACACCGGCTGCCATTTATTCAAATTATTAGATAAATACAGACCAGAAGAAGCCTC
AGTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGTCA
AGCTGCTCCAAAAAGCTGAAAAACCAGTCCAACACTTACGTTTCGGTATTGACTCTGTCA
CCAAATTAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACGATGTTGACCCAG
TTGAACTCGTCTTATACTTACCAACCCTCTGCAGACGTATGGATGTCCCATACTGTATCG
TCAAATCTAAATCCAGATTAGGTGAATTAGTTCACATGAGAAACGCTTCATGTGTTGCCC
TCACTGGTGTCAACTCTGCTGACTCAAACGAACTCGCTTTATTAGTTGAATCCGCCAAAC
AAATGTTCAACAATAACAGTGAACACAGAAAGACCTGGGGTGGTAACACTTTATCTGGTC
CAGCTCGTGCTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAGAAAGTTTAGCCAAAT
CAAAGATNCTAAGCTCTTTAATAGTTTAGCGAGACNCTCANNCTTTTTTAAATA
Length of connected seq. 1184
Full length Seq ID VSI829E
Full length Seq.
>VSI829E.Seq
CAGAATGTCTCAAAAACAAACTAAACCAGCTGCTGCCACCAAAGCTGCTCCAGCCAAAAC
CGCTGTTGCCACCACCAAATCAAAGAAAGTCGTCAAGAAGGGTGAAAAGAAAATCAAAAC
TAGAACCTTATTCAACGCCTTATACACCAAAAACGTCAAAAACTTTGGTACTGGTTTCGG
TGTTCAACCAAAGAGAGATTTAACTCATTTCACTCACTGGCCAAGATACATCAAATTACA
AAGACAAAGACGTGTTTTATTAAAGAGATTAAAGGTTCCACCAACAATCAACCAATTCAC
CCGTGTCTTTGACAAAAACACCGNNNNCCATTTATTCAAATTATTAGATAAATACAGACC
AGAAGAAGCCTCAGTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCAC
TCCAAAAGGTCAAGCTGCTCCAAAAAGCTGAAAAACCAGTCCAACACCTTACGTTTCGGT
ATTGACTCTGTCACCAAATTAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCAC
GATGTTGACCCAGTTGAACTCGTCTTATACTTACCAACCCTCTGCAGACGTATGGATGTC
CCATACTGTATCGTCAAATCTAAATCCAGATTAGGTGAATTAGTTCACATGAGAAACGCT
TCATGTGTTGCCCTCACTGGTGTCAACTCTGCTGACTCAAACGAACTCGCTTTATTAGTT
GAATCCGCCAAACAAATGTTCAACAATAACAGTGAACACAGAAAGACCTGGGGTGGTAAC
ACTTTATCTGGTCCAGCTCGTGCTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAGAA
AGTTTAGCCAAATCAAAGATNCTAAGCTCTTTAATAGTTTAGCGAGACNCTCANNCTTTT
TTAAATA
Length of full length seq. 907