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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI818
Library VS
(Link to library)
Clone ID VSI818
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSI818F
(Link to Original site)
Representative DNA sequence 
>VSI818 (VSI818Q) /CSM/VS/VSI8-A/VSI818Q.Seq.d/
CTGTTAGATGGTTACATATTCATATCCTTGGTGGTAGACAAATGAATTGGCCACCAGGCT
AATTTCAATTAAAGAATTCTTCATTGTACCTATTTAAACCTTTTACTAATAATAGTAAAG
AAAATTCACCATTGGCACGTACATAATAAAAAAATATATCCTTTTAATGGATCACTAGCA
ACAAAAAAAAAAAAACCAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
lldgyifislvvdk*ighqanfn*RILHCTYLNLLLIIVKKIHHWHVHNKKIYPFNGSLA
TKKKKPKK---
Translated Amino Acid sequence (All Frames) 
Frame A:
lldgyifislvvdk*ighqanfn*RILHCTYLNLLLIIVKKIHHWHVHNKKIYPFNGSLA
TKKKKPKK---


Frame B:
c*mvtysypww*tnelatrlisikeffivpi*tfy****rkftigtyiikkyillmdh*q
qkkknqkk---


Frame C:
vrwlhihilggrqmnwppg*fqlknsslylfkpftnnskensplart**knisf*witsn
kkkktkkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI818 (VSI818Q) /CSM/VS/VSI8-A/VSI818Q.Seq.d/                        319   9e-87
VSB884 (VSB884Q) /CSM/VS/VSB8-D/VSB884Q.Seq.d/                        319   9e-87
VSB635 (VSB635Q) /CSM/VS/VSB6-B/VSB635Q.Seq.d/                        319   9e-87
SSK564 (SSK564Q) /CSM/SS/SSK5-C/SSK564Q.Seq.d/                        319   9e-87
SSI106 (SSI106Q) /CSM/SS/SSI1-A/SSI106Q.Seq.d/                        319   9e-87
SSH331 (SSH331Q) /CSM/SS/SSH3-B/SSH331Q.Seq.d/                        319   9e-87
SSG896 (SSG896Q) /CSM/SS/SSG8-D/SSG896Q.Seq.d/                        319   9e-87
SSF275 (SSF275Q) /CSM/SS/SSF2-D/SSF275Q.Seq.d/                        319   9e-87
SSF239 (SSF239Q) /CSM/SS/SSF2-B/SSF239Q.Seq.d/                        319   9e-87
SSE388 (SSE388Q) /CSM/SS/SSE3-D/SSE388Q.Seq.d/                        319   9e-87
own update 2001.11.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB029922|AB029922.1 Dictyostelium discoideum DD-1 mRNA, complete cds.   291  1e-77  3
U61986|U61986.1 Dictyostelium discoideum PkiA (pkiA) mRNA, complete cds.   194  6e-72  4
BH605184|BH605184.1 BOGSB09TR BOGS Brassica oleracea genomic clone BOGSB09, DNA sequence.    48  0.001  2
BH724763|BH724763.1 BOMPT20TF BO_2_3_KB Brassica oleracea genomic clone BOMPT20, DNA sequence.    48  0.042  1
BX219259|BX219259.1 Danio rerio genomic clone DKEY-47E15, genomic survey sequence.    46  0.16  1
AC103988|AC103988.7 Homo sapiens chromosome 15, clone RP11-618N24, complete sequence.    38  2.1  3
AL929053|AL929053.5 Zebrafish DNA sequence from clone DKEY-21N12 in linkage group 20.    42  2.6  1
BQ198350|BQ198350.1 NXLV127_F04_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA clone NXLV127_F04 5', mRNA sequence.    42  2.6  1
AC120501|AC120501.1 Gallus gallus clone TAM31-14F7, WORKING DRAFT SEQUENCE, 10 unordered pieces.    42  2.6  1
BQ197303|BQ197303.1 NXLV112_C05_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA clone NXLV112_C05 5', mRNA sequence.    42  2.6  1
dna update 2003. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q23921) RecName: Full=Protein pkiA; AltName: Full=Protein DD-1;...    49   4e-05
EU968686_1(EU968686|pid:none) Zea mays clone 323451 hypothetical...    42   0.008
AC147481_24(AC147481|pid:none) Medicago truncatula chromosome 2 ...    40   0.019
AK103503_1(AK103503|pid:none) Oryza sativa Japonica Group cDNA c...    40   0.032
(P70349) RecName: Full=Histidine triad nucleotide-binding protei...    40   0.032
(P62958) RecName: Full=Histidine triad nucleotide-binding protei...    39   0.041
DQ347595_1(DQ347595|pid:none) Bos taurus clone A29 HINT1 mRNA, p...    39   0.041
(P80912) RecName: Full=Histidine triad nucleotide-binding protei...    39   0.041
U09405_1(U09405|pid:none) Bos taurus putative protein kinase C i...    39   0.041
AY860950_1(AY860950|pid:none) Bombyx mori protein kinase c inhib...    39   0.041
protein update 2009. 3.25
PSORT 

 psg: 0.91  gvh: 0.34  alm: 0.35  top: 0.77  tms: 0.00  mit: 0.43  mip: 0.00
 nuc: 0.34  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 20.0 %: mitochondrial
	 12.0 %: cytoplasmic

>> prediction for VSI818 is nuc
5' end seq. ID VSI818F
5' end seq. 
>VSI818F.Seq
CTGTTAGATGGTTACATATTCATATCCTTGGTGGTAGACAAATGAATTGGCCACCAGGCT
AATTTCAATTAAAGAATTCTTCATTGTACCTATTTAAACCTTTTACTAATAATAGTAAAG
AAAATTCACCATTGGCACGTACATAATAAAAAAATATATCCTTTTAATGGATCACTAGCA
ACAAAAAAAAAAAAACCAAAAAAAAAA----------
Length of 5' end seq. 207
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -