VSI731
Library VS
(Link to library)
Clone ID VSI731
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSI731Z
(Link to Original site)
Representative DNA sequence
>VSI731 (VSI731Q) /CSM/VS/VSI7-B/VSI731Q.Seq.d/
XXXXXXXXXXTTTATTTTTTTTTTTTNNTTTTTTAATGATGAAGATAC
sequence update 2001. 3.22
Translated Amino Acid sequence
---LFFFFXFLMMKI


Translated Amino Acid sequence (All Frames)
Frame A:
---LFFFFXFLMMKI


Frame B:
---yfffxxf***ry


Frame C:
---ifffxffnded


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSI731 (VSI731Q) /CSM/VS/VSI7-B/VSI731Q.Seq.d/ 28 7.9
VFC123 (VFC123Q) /CSM/VF/VFC1-A/VFC123Q.Seq.d/ 28 7.9
SFE189 (SFE189Q) /CSM/SF/SFE1-D/SFE189Q.Seq.d/ 28 7.9
AHO243 (AHO243Q) /CSM/AH/AHO2-B/AHO243Q.Seq.d/ 28 7.9
AFD446 (AFD446Q) /CSM/AF/AFD4-B/AFD446Q.Seq.d/ 28 7.9

own update 2003. 1.10
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 169268
Number of Sequences: 24570178
Number of extensions: 169268
Number of successful extensions: 169063
Number of sequences better than 10.0: 0
length of query: 48
length of database: P,101,865,928
effective HSP length: 20
effective length of query: 28
effective length of database: O,610,462,368
effective search space: 885092946304
effective search space used: 885092946304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
[blastall] WARNING: [000.000] Reached max 200 HSPs in BlastSaveCurrentHsp, continuing with this limit

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2003. 7.17
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 19,730,514
protein update 2009. 3.24
PSORT -
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSI731Z
3' end seq.
>VSI731Z.Seq
----------TTTATTTTTTTTTTTTNNTTTTTTAATGATGAAGATAC
Length of 3' end seq. 38
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -