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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI708
Library VS
(Link to library)
Clone ID VSI708
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16090-1
Original site URL
Representative seq. ID VSI708Z
(Link to Original site)
Representative DNA sequence 
>VSI708 (VSI708Q) /CSM/VS/VSI7-A/VSI708Q.Seq.d/
XXXXXXXXXXCTCACACTCCACGTGGTCCATTCGAAAAAGGAAAGAATCGACGCTGAAAT
TAAAAGTTGTCGGTGAATTTGGTTTAAAGAACAAAAACGAAGTATGGAGAGTCCAATACG
CTTTAGCCAAAATCAGAAAGGCTGCTAGAGAACTCCTCGTTCTTGATGAAAAAGACCCAA
AACGTATCCTTTGAAGGTTCAGCTCTCCTCCGTAGACTCCACAAATTAGGTGTCATGGAA
GAATCAAAGAACAAACTCGATTATATTCTTAATCTTAAAGTTCAAGATTTCATGGAAAGA
CGTCTCCAAACTTTAGTCTTCAAAAATGGTCTTGCCAAATCAATCCATCACGCTCGTGTT
TTAATCAAAGGTAGACACATCCGTGTTGGTAAACAATTAGTCAACGTTCCATCTTTCCTC
GTCCGTGTTGAATCCCAAAAGCACTTAGGTTTAGCTTCAACCTCCCCATTAGCTGGTGGT
CGTCCAGGTCGTCGTGCCCGTAAAATGGCCAAGAACAACTCATCAAAAGGTGAAGAAGAA
AACTAAATTAATAAAAATAACCATTATATTAG
sequence update 2001. 3.22
Translated Amino Acid sequence 
---htprgpfekgknrr*n*klsvnlv*rtktkygesntl*PKSERLLENSSFLMKKTQN
VSFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVL
IKGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARKMAKNNSSKGEEEN
*inknnhyi
Translated Amino Acid sequence (All Frames) 
Frame A:
---shstwsirkrkestlklkvvgefglknknevwrvqyalakirkaarellvldekdpk
ril*rfsspp*tpqirchgrikeqtrlys*s*ssrfhgktspnfslqkwscqinpsrscf
nqr*thpcw*tisqrsifprpc*ipkalrfsfnlpiswwssrsscp*ngqeqlikr*rrk
ln**k*ply*


Frame B:
---htprgpfekgknrr*n*klsvnlv*rtktkygesntl*PKSERLLENSSFLMKKTQN
VSFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVL
IKGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARKMAKNNSSKGEEEN
*inknnhyi


Frame C:
---tlhvvhskkeridaeikscr*iwfkeqkrsmespirfsqnqkgc*rtprs**krpkt
yplkvqlssvdstn*vswknqrtnsiiflilkfkiswkdvskl*sskmvlpnqsitlvf*
skvdtsvlvnn*stfhlsssvlnpkst*v*lqpph*lvvvqvvvpvkwprtthqkvkkkt
klikitiil
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI708 (VSI708Q) /CSM/VS/VSI7-A/VSI708Q.Seq.d/                       1114   0.0
VSH713 (VSH713Q) /CSM/VS/VSH7-A/VSH713Q.Seq.d/                       1059   0.0
VHO354 (VHO354Q) /CSM/VH/VHO3-C/VHO354Q.Seq.d/                       1059   0.0
VHJ170 (VHJ170Q) /CSM/VH/VHJ1-C/VHJ170Q.Seq.d/                       1059   0.0
FC-BO11 (FC-BO11Q) /CSM/FC/FC-BO/FC-BO11Q.Seq.d/                     1059   0.0
FC-AS15 (FC-AS15Q) /CSM/FC/FC-AS/FC-AS15Q.Seq.d/                     1059   0.0
VSD109 (VSD109Q) /CSM/VS/VSD1-A/VSD109Q.Seq.d/                       1045   0.0
VSF164 (VSF164Q) /CSM/VS/VSF1-C/VSF164Q.Seq.d/                       1039   0.0
VSD823 (VSD823Q) /CSM/VS/VSD8-A/VSD823Q.Seq.d/                       1031   0.0
VSK290 (VSK290Q) /CSM/VS/VSK2-D/VSK290Q.Seq.d/                       1019   0.0
own update 2003. 1.10
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X06636|X06636.1 Dictyostelium rp1024 gene for ribosomal protein 1024.   761  0.0  4
X15384|X15384.1 Dictyostelium discoideum mRNA for V12 gene.      761  0.0  1
AL113229|AL113229.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72  5e-14  2
AL111854|AL111854.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72  5e-14  2
AL111255|AL111255.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72  6e-14  2
AL116832|AL116832.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72  6e-14  2
AL116249|AL116249.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72  6e-14  2
AL116178|AL116178.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72  6e-14  2
AL115920|AL115920.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72  6e-14  2
AL115016|AL115016.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72  6e-14  2
dna update 2003. 7.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP007167_255(AP007167|pid:none) Aspergillus oryzae RIB40 genomic...   140   5e-48
AM270039_25(AM270039|pid:none) Aspergillus niger contig An02c045...   139   1e-47
(P14132) RecName: Full=40S ribosomal protein S9; AltName: Full=4...   190   2e-47
CU633445_35(CU633445|pid:none) Podospora anserina genomic DNA ch...   140   8e-47
(Q9LXG1) RecName: Full=40S ribosomal protein S9-1;  &AK228437_1(...   140   8e-47
AM920435_274(AM920435|pid:none) Penicillium chrysogenum Wisconsi...   136   8e-47
AY389955_1(AY389955|pid:none) Latimeria chalumnae ribosomal prot...   134   4e-46
(Q9FLF0) RecName: Full=40S ribosomal protein S9-2;  &AB010077_2(...   140   6e-46
EU958237_1(EU958237|pid:none) Zea mays clone 1680160 40S ribosom...   138   6e-46
DQ387872_8(DQ387872|pid:none) Neurospora crassa strain Adiopodou...   138   6e-46
protein update 2009. 3.24
PSORT 

 psg: 0.64  gvh: 0.23  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.17  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VSI708 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSI708Z
3' end seq. 
>VSI708Z.Seq
----------CTCACACTCCACGTGGTCCATTCGAAAAAGGAAAGAATCGACGCTGAAAT
TAAAAGTTGTCGGTGAATTTGGTTTAAAGAACAAAAACGAAGTATGGAGAGTCCAATACG
CTTTAGCCAAAATCAGAAAGGCTGCTAGAGAACTCCTCGTTCTTGATGAAAAAGACCCAA
AACGTATCCTTTGAAGGTTCAGCTCTCCTCCGTAGACTCCACAAATTAGGTGTCATGGAA
GAATCAAAGAACAAACTCGATTATATTCTTAATCTTAAAGTTCAAGATTTCATGGAAAGA
CGTCTCCAAACTTTAGTCTTCAAAAATGGTCTTGCCAAATCAATCCATCACGCTCGTGTT
TTAATCAAAGGTAGACACATCCGTGTTGGTAAACAATTAGTCAACGTTCCATCTTTCCTC
GTCCGTGTTGAATCCCAAAAGCACTTAGGTTTAGCTTCAACCTCCCCATTAGCTGGTGGT
CGTCCAGGTCGTCGTGCCCGTAAAATGGCCAAGAACAACTCATCAAAAGGTGAAGAAGAA
AACTAAATTAATAAAAATAACCATTATATTAG
Length of 3' end seq. 562
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -