VSI702
Library VS
(Link to library)
Clone ID VSI702
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U06449-1
Original site URL
Representative seq. ID VSI702P
(Link to Original site)
Representative DNA sequence
>VSI702 (VSI702Q) /CSM/VS/VSI7-A/VSI702Q.Seq.d/
TATAAAATGGACTCCAAGAACGTTGAACTCTACACCCCACGTAAGTGCTCTGCCACCAAC
CGTTTAATCACCGCCAAGGATCACGCTTCCGTCCAAATTAACATTGGTCACGTCAATGCT
GAAGGTATCTACAATGGTGAACAAACCATCTTTGCTTTCTGCGGTTTCCTCCGTAACAAT
GGTCAATCCGATGCTGCTCTCAACAGATTAGCCCAACAAAAAGGTTTCTTAAAATCATTC
TAAATTGACTCATTTTTAGATATTTTATAAAATAAAAAAAGCTTTTTAAAAAAAAAAXXX
XXXXXXXTATAAAATGGACTCCAAGAACGTTGAACTCTACACCCCACGTAAGTGCTCTGC
CACCAACCGTTTAATCACCGCCAAGGATCACGCTTCCGTCCAAATTAACATTGGTCACGT
CAATGCTGAAGGTATCTACAATGGTGAACAAACCATCTTTGCTTTCTGCGGTTTCCTCCG
TAACAANGGTCAATCCGATGCTGCTCTCAACAGATTAGCCCAACAAAAAGGTTTCTTAAA
ATCATTCTAAATTTACTCATTTTTAGGATATTTTATAAAATAAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence
ykmdsknvelytprkcsatnrlitakdhasvqinighvnaegiyngeqtifafcgflrnn
gqsdaalnrlaqqkgflksf*idsfldil*NKKSFLKKK---

---YKMDSKNVELYTPRKCSATNRLITAKDHASVQINIGHVNAEGIYNGEQTIFAFCGFL
RNXGQSDAALNRLAQQKGFLKSF*iysflgyfik*k


Translated Amino Acid sequence (All Frames)
Frame A:
ykmdsknvelytprkcsatnrlitakdhasvqinighvnaegiyngeqtifafcgflrnn
gqsdaalnrlaqqkgflksf*idsfldil*NKKSFLKKK---

---YKMDSKNVELYTPRKCSATNRLITAKDHASVQINIGHVNAEGIYNGEQTIFAFCGFL
RNXGQSDAALNRLAQQKGFLKSF*iysflgyfik*k

Frame B:
ikwtprtlnstphvsalpptv*sppritlpskltlvtsmlkvstmvnkpsllsavssvtm
vnpmllstd*pnkkvs*nhsklthf*ifykikkaf*kk---

---ikwtprtlnstphvsalpptv*sppritlpskltlvtsmlkvstmvnkpsllsavss
vtxvnpmllstd*pnkkvs*nhskfthf*dil*nkk

Frame C:
*nglqer*tlhpt*vlchqpfnhrqgsrfrpn*hwsrqc*rylqw*tnhlcflrfpp*qw
sirccsqqisptkrflkiiln*lifryfik*kklfkkk---

---*nglqer*tlhpt*vlchqpfnhrqgsrfrpn*hwsrqc*rylqw*tnhlcflrfpp
*qxsirccsqqisptkrflkiilnllifrifykik

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSI702 (VSI702Q) /CSM/VS/VSI7-A/VSI702Q.Seq.d/ 549 e-155
VSH268 (VSH268Q) /CSM/VS/VSH2-C/VSH268Q.Seq.d/ 533 e-151
VSK496 (VSK496Q) /CSM/VS/VSK4-D/VSK496Q.Seq.d/ 529 e-149
VSK316 (VSK316Q) /CSM/VS/VSK3-A/VSK316Q.Seq.d/ 529 e-149
VSH266 (VSH266Q) /CSM/VS/VSH2-C/VSH266Q.Seq.d/ 523 e-148
VSD431 (VSD431Q) /CSM/VS/VSD4-B/VSD431Q.Seq.d/ 523 e-148
VSJ632 (VSJ632Q) /CSM/VS/VSJ6-B/VSJ632Q.Seq.d/ 517 e-146
VSD593 (VSD593Q) /CSM/VS/VSD5-D/VSD593Q.Seq.d/ 517 e-146
VSC515 (VSC515Q) /CSM/VS/VSC5-A/VSC515Q.Seq.d/ 513 e-145
VSF747 (VSF747Q) /CSM/VS/VSF7-B/VSF747Q.Seq.d/ 509 e-143

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CA903142|CA903142.1 PCSC20414 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to 40S ribosomal protein S21, mRNA sequence. 50 1e-04 2
CA903144|CA903144.1 PCSC21037 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to 40S ribosomal protein S21, mRNA sequence. 50 1e-04 2
CA903143|CA903143.1 PCSC20975 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to 40S ribosomal protein S21, mRNA sequence. 50 0.001 2
AV437905|AV437905.1 Porphyra yezoensis cDNA clone:PS028d08_r, 5' end. 54 0.002 1
BE586942|BE586942.1 WHE0507_A04_B07ZR Secale cereale aluminum-stressed root tip cDNA library Secale cereale cDNA clone WHE0507_A04_B07, mRNA sequence. 54 0.002 1
CB376945|CB376945.1 Hb07H09 Latex Lambda TriplEX cDNA Library Hevea brasiliensis cDNA clone Hb07H09 5', mRNA sequence. 52 0.008 1
CA903132|CA903132.1 PCSC13732 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to 40S ribosomal protein S21, mRNA sequence. 42 0.012 2
CA903131|CA903131.1 PCSC13701 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to 40S ribosomal protein S21, mRNA sequence. 42 0.015 2
CA903133|CA903133.1 PCSC13909 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to 40S ribosomal protein S21, mRNA sequence. 42 0.016 2
CA897254|CA897254.1 PCEP03464 Scarlet Runner Bean Embryo-Proper Region Phaseolus coccineus cDNA 5' similar to 40S ribosomal protein S21, mRNA sequence. 42 0.016 2
dna update 2003. 7.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54BN4) RecName: Full=40S ribosomal protein S21; 160 2e-38
GM961446_1(GM961446|pid:none) Sequence 8400 from Patent WO200814... 101 2e-20
GM961448_1(GM961448|pid:none) Sequence 8402 from Patent WO200814... 100 2e-20
GM961348_1(GM961348|pid:none) Sequence 8302 from Patent WO200814... 100 4e-20
GM961466_1(GM961466|pid:none) Sequence 8420 from Patent WO200814... 100 4e-20
FB334991_1(FB334991|pid:none) Sequence 2517 from Patent WO200711... 100 5e-20
EF145835_1(EF145835|pid:none) Populus trichocarpa clone WS0113_L... 100 5e-20
GM961372_1(GM961372|pid:none) Sequence 8326 from Patent WO200814... 99 6e-20
(Q9SMI2) RecName: Full=40S ribosomal protein S21; &AJ011718_1(A... 99 6e-20
GM961454_1(GM961454|pid:none) Sequence 8408 from Patent WO200814... 99 6e-20
protein update 2009. 3.24
PSORT

psg: 0.53 gvh: 0.33 alm: 0.53 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VSI702 is cyt

5' end seq. ID VSI702F
5' end seq.
>VSI702F.Seq
TATAAAATGGACTCCAAGAACGTTGAACTCTACACCCCACGTAAGTGCTCTGCCACCAAC
CGTTTAATCACCGCCAAGGATCACGCTTCCGTCCAAATTAACATTGGTCACGTCAATGCT
GAAGGTATCTACAATGGTGAACAAACCATCTTTGCTTTCTGCGGTTTCCTCCGTAACAAT
GGTCAATCCGATGCTGCTCTCAACAGATTAGCCCAACAAAAAGGTTTCTTAAAATCATTC
TAAATTGACTCATTTTTAGATATTTTATAAAATAAAAAAAGCTTTTTAAAAAAAAAA---
-------
Length of 5' end seq. 297
3' end seq. ID VSI702Z
3' end seq.
>VSI702Z.Seq
----------TATAAAATGGACTCCAAGAACGTTGAACTCTACACCCCACGTAAGTGCTC
TGCCACCAACCGTTTAATCACCGCCAAGGATCACGCTTCCGTCCAAATTAACATTGGTCA
CGTCAATGCTGAAGGTATCTACAATGGTGAACAAACCATCTTTGCTTTCTGCGGTTTCCT
CCGTAACAANGGTCAATCCGATGCTGCTCTCAACAGATTAGCCCAACAAAAAGGTTTCTT
AAAATCATTCTAAATTTACTCATTTTTAGGATATTTTATAAAATAAAAAA
Length of 3' end seq. 280
Connected seq. ID VSI702P
Connected seq.
>VSI702P.Seq
TATAAAATGGACTCCAAGAACGTTGAACTCTACACCCCACGTAAGTGCTCTGCCACCAAC
CGTTTAATCACCGCCAAGGATCACGCTTCCGTCCAAATTAACATTGGTCACGTCAATGCT
GAAGGTATCTACAATGGTGAACAAACCATCTTTGCTTTCTGCGGTTTCCTCCGTAACAAT
GGTCAATCCGATGCTGCTCTCAACAGATTAGCCCAACAAAAAGGTTTCTTAAAATCATTC
TAAATTGACTCATTTTTAGATATTTTATAAAATAAAAAAAGCTTTTTAAAAAAAAAA---
-------TATAAAATGGACTCCAAGAACGTTGAACTCTACACCCCACGTAAGTGCTCTGC
CACCAACCGTTTAATCACCGCCAAGGATCACGCTTCCGTCCAAATTAACATTGGTCACGT
CAATGCTGAAGGTATCTACAATGGTGAACAAACCATCTTTGCTTTCTGCGGTTTCCTCCG
TAACAANGGTCAATCCGATGCTGCTCTCAACAGATTAGCCCAACAAAAAGGTTTCTTAAA
ATCATTCTAAATTTACTCATTTTTAGGATATTTTATAAAATAAAAAA
Length of connected seq. 577
Full length Seq ID -
Full length Seq. -
Length of full length seq. -