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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI673
Library VS
(Link to library)
Clone ID VSI673
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14356-1
Original site URL
Representative seq. ID VSI673E
(Link to Original site)
Representative DNA sequence 
>VSI673 (VSI673Q) /CSM/VS/VSI6-D/VSI673Q.Seq.d/
GTTCATTATTCAACTCATATAAAAAAACGTCAAATAACAAAGAATGATCAGATCAATTAT
TAAATCAAGCAACAATTTATTAAAATCAAACGTTGCTATCAATAGTAATAAAAGATTTTT
TGCCACTGAAGCATCAGCCACCAGTGATTTATTAACTTTTTCATTATTATCACCACACCA
AACCATCTATAAAGATAAGAAAGCACAATTAGTTACACTTCCAGGTGCTAAAGGTATTTT
TGGTGTTGCCAAAAACCACGTTCCAAGAATTGCTGAACTCAAACCAGGCGTTATTCAAAT
CAATCACGAAAACGGTGACTTGGAGAAATTCTTTATCAGTGGTGGATTCGCTTTTGTCAA
TCCAGATGCATCATGTTACATCAACACCATCGAAGCCGTCCCAATCGACCAATTAGATGC
AGAGGGAAGTTAAAAATGGTTTAAGCTCGTTACACTCAACTCTACAATGATGCTCAAGAG
GGAAAATGCAAAAGCTGTCGCTTTAATTGGTTTGGAAACTTATCAACAAATGGGCATTTG
CTTGTGGTGTTT
sequence update 2001. 3.26
Translated Amino Acid sequence 
fiiqli*knvk*QRMIRSIIKSSNNLLKSNVAINSNKRFFATEASATSDLLTFSLLSPHQ
TIYKDKKAQLVTLPGAKGIFGVAKNHVPRIAELKPGVIQINHENGDLEKFFISGGFAFVN
PDASCYINTIEAVPIDQLDAEGS*kwfklvtlnstmmlkrenakavaligletyqqmgic
lwc
Translated Amino Acid sequence (All Frames) 
Frame A:
vhysthikkrqitkndqiny*ikqqfikikrcyq***kifch*sishq*finffiiittp
nhl*r*estisytsrc*ryfwccqkprsknc*tqtrrysnqsrkr*lgeilyqwwirfcq
srcimlhqhhrsrpnrpircrgklkmv*arytqlyndaqegkckscrfnwfgnlstnghl
lvvf


Frame B:
fiiqli*knvk*QRMIRSIIKSSNNLLKSNVAINSNKRFFATEASATSDLLTFSLLSPHQ
TIYKDKKAQLVTLPGAKGIFGVAKNHVPRIAELKPGVIQINHENGDLEKFFISGGFAFVN
PDASCYINTIEAVPIDQLDAEGS*kwfklvtlnstmmlkrenakavaligletyqqmgic
lwc


Frame C:
slfnsykktsnnke*sdqllnqatiy*nqtllsivikdflplkhqppviy*lfhyyhhtk
psikirkhn*lhfqvlkvflvlpkttfqellnsnqalfksitktvtwrnslsvvdsllsi
qmhhvtstpskpsqstn*mqrevknglsslhstlq*csrgkmqklsl*lvwklinkwafa
cgv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI673 (VSI673Q) /CSM/VS/VSI6-D/VSI673Q.Seq.d/                       1053   0.0
SSG537 (SSG537Q) /CSM/SS/SSG5-B/SSG537Q.Seq.d/                        973   0.0
SSB438 (SSB438Q) /CSM/SS/SSB4-B/SSB438Q.Seq.d/                        967   0.0
VSI102 (VSI102Q) /CSM/VS/VSI1-A/VSI102Q.Seq.d/                        950   0.0
SSG545 (SSG545Q) /CSM/SS/SSG5-B/SSG545Q.Seq.d/                        938   0.0
VSD220 (VSD220Q) /CSM/VS/VSD2-A/VSD220Q.Seq.d/                        930   0.0
SSM538 (SSM538Q) /CSM/SS/SSM5-B/SSM538Q.Seq.d/                        785   0.0
SSA130 (SSA130Q) /CSM/SS/SSA1-B/SSA130Q.Seq.d/                        694   0.0
SSJ416 (SSJ416Q) /CSM/SS/SSJ4-A/SSJ416Q.Seq.d/                        692   0.0
SSK361 (SSK361Q) /CSM/SS/SSK3-C/SSK361Q.Seq.d/                        690   0.0
own update 2001. 3.31
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU269067) Dictyostelium discoideum vegetative cDNA clone:VS...   789   0.0    5
(AU269066) Dictyostelium discoideum vegetative cDNA clone:VS...   936   0.0    2
(AU268151) Dictyostelium discoideum vegetative cDNA clone:VS...   585   0.0    8
(AU268150) Dictyostelium discoideum vegetative cDNA clone:VS...   773   0.0    4
(AU263671) Dictyostelium discoideum vegetative cDNA clone:VS...   741   0.0    5
(AU263672) Dictyostelium discoideum vegetative cDNA clone:VS...   741   0.0    5
(C93296) Dictyostelium discoideum slug cDNA, clone SSM538.        622   0.0    5
(AU075928) Dictyostelium discoideum slug cDNA, clone SSA130.      688   0.0    2
(C90100) Dictyostelium discoideum slug cDNA, clone SSG537.        547   0.0    5
(C91046) Dictyostelium discoideum slug cDNA, clone SSJ416.        509   0.0    5
dna update 2009. 7.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM920437_2565(AM920437|pid:none) Penicillium chrysogenum Wiscons...    95   1e-18
CR382133_594(CR382133|pid:none) Debaryomyces hansenii strain CBS...    93   4e-18
AM269964_10(AM269964|pid:none) Aspergillus niger contig An01c017...    92   8e-18
CP000589_61(CP000589|pid:none) Ostreococcus lucimarinus CCE9901 ...    90   3e-17
(Q40089) RecName: Full=ATP synthase subunit delta', mitochondria...    82   9e-15
AK070990_1(AK070990|pid:none) Oryza sativa Japonica Group cDNA c...    81   1e-14
CR380949_179(CR380949|pid:none) Candida glabrata strain CBS138 c...    81   1e-14
EF082682_1(EF082682|pid:none) Picea sitchensis clone WS0286_K03 ...    80   3e-14
EF103388_1(EF103388|pid:none) Haliotis discus discus mitochondri...    80   4e-14
BT033773_1(BT033773|pid:none) Zea mays full-length cDNA clone ZM...    80   4e-14
protein update 2009. 3.24
PSORT 

 psg: 0.64  gvh: 0.54  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.55  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for VSI673 is mit
5' end seq. ID VSI673F
5' end seq. 
>VSI673F.Seq
GTTCATTATTCAACTCATATAAAAAAACGTCAATAACAAAGAATGATCAGATCAATTATT
AAATCAAGCAACAATTTATTAAAATCAAACGTTGCTATCAATAGTAATAAAAGATTTTTT
GCCACTGAAGCATCAGCCACCAGTGATTTATTAACTTTTTCATTATTATCACCACACCAA
ACCATCTATAAAGATAAGAAAGCACAATTAGTTACACTTCCAGGTGCTAAAGGTATTTTT
GGTGTTGCCAAAAACCACGTTCCAAGAATTGCTGAACTCAAACCAGGCGTTATTCAAATC
AATCACGAAAACGGTGACTTGGAGAAATTCTTTATCAGTGGTGGATTCGCTTTTGTCAAT
CCAGATGCATCATGTTACATCAACACCATCGAAGCCGTCCCAATCGACCAATTAGATGCA
GAGGGAAGTTAAAAATGGTTTAAGCTCGTTACACTCAACTCTACAATGATGCTCAAGAGG
GAAAATGCAAAAGCTGTCGCTTT----------
Length of 5' end seq. 503
3' end seq. ID VSI673Z
3' end seq. 
>VSI673Z.Seq
----------GTTCATTATTCAACTCATATAAAAAAACGTCAAATAACAAAGAATGATCA
GATCAATTATTAAATCAAGCAACAATTTATTAAAATCAAACGTTGCTATCAATAGTAATA
AAAGATTTTTTGCCACTGAAGCATCAGCCACCAGTGATTTATTAACTTTTTCATTATTAT
CACCACACCAAACCATCTATAAAGATAAGAAAGCACAATTAGTTACACTTCCAGGTGCTA
AAGGTATTTTTGGTGTTGCCAAAAACCACGTTCCAAGAATTGCTGAACTCAAACCAGGCG
TTATTCAAATCAATCACGAAAACGGTGACTTGGAGAAATTCTTTATCAGTGGTGGATTCG
CTTTTGTCAATCCAGATGCATCATGTTACATCAACACCATCGAAGCCGTCCCAATCGACC
AATTAGATGCAGAGGAAGTTAAAAATGGTTTAGCTCGTTACACTCAACTCTACAATGATG
CTCAAGAGGAAAATGCAAAAGCTGTCGCTTTAATTGGTTTGGAAACTTATCAACAAATGG
GCATTTGCTTGTGGTGTTT
Length of 3' end seq. 549
Connected seq. ID VSI673P
Connected seq. 
>VSI673P.Seq
GTTCATTATTCAACTCATATAAAAAAACGTCAATAACAAAGAATGATCAGATCAATTATT
AAATCAAGCAACAATTTATTAAAATCAAACGTTGCTATCAATAGTAATAAAAGATTTTTT
GCCACTGAAGCATCAGCCACCAGTGATTTATTAACTTTTTCATTATTATCACCACACCAA
ACCATCTATAAAGATAAGAAAGCACAATTAGTTACACTTCCAGGTGCTAAAGGTATTTTT
GGTGTTGCCAAAAACCACGTTCCAAGAATTGCTGAACTCAAACCAGGCGTTATTCAAATC
AATCACGAAAACGGTGACTTGGAGAAATTCTTTATCAGTGGTGGATTCGCTTTTGTCAAT
CCAGATGCATCATGTTACATCAACACCATCGAAGCCGTCCCAATCGACCAATTAGATGCA
GAGGGAAGTTAAAAATGGTTTAAGCTCGTTACACTCAACTCTACAATGATGCTCAAGAGG
GAAAATGCAAAAGCTGTCGCTTT----------GTTCATTATTCAACTCATATAAAAAAA
CGTCAAATAACAAAGAATGATCAGATCAATTATTAAATCAAGCAACAATTTATTAAAATC
AAACGTTGCTATCAATAGTAATAAAAGATTTTTTGCCACTGAAGCATCAGCCACCAGTGA
TTTATTAACTTTTTCATTATTATCACCACACCAAACCATCTATAAAGATAAGAAAGCACA
ATTAGTTACACTTCCAGGTGCTAAAGGTATTTTTGGTGTTGCCAAAAACCACGTTCCAAG
AATTGCTGAACTCAAACCAGGCGTTATTCAAATCAATCACGAAAACGGTGACTTGGAGAA
ATTCTTTATCAGTGGTGGATTCGCTTTTGTCAATCCAGATGCATCATGTTACATCAACAC
CATCGAAGCCGTCCCAATCGACCAATTAGATGCAGAGGAAGTTAAAAATGGTTTAGCTCG
TTACACTCAACTCTACAATGATGCTCAAGAGGAAAATGCAAAAGCTGTCGCTTTAATTGG
TTTGGAAACTTATCAACAAATGGGCATTTGCTTGTGGTGTTT
Length of connected seq. 1052
Full length Seq ID VSI673E
Full length Seq. 
>VSI673E.Seq
GTTCATTATTCAACTCATATAAAAAAACGTCAAATAACAAAGAATGATCAGATCAATTAT
TAAATCAAGCAACAATTTATTAAAATCAAACGTTGCTATCAATAGTAATAAAAGATTTTT
TGCCACTGAAGCATCAGCCACCAGTGATTTATTAACTTTTTCATTATTATCACCACACCA
AACCATCTATAAAGATAAGAAAGCACAATTAGTTACACTTCCAGGTGCTAAAGGTATTTT
TGGTGTTGCCAAAAACCACGTTCCAAGAATTGCTGAACTCAAACCAGGCGTTATTCAAAT
CAATCACGAAAACGGTGACTTGGAGAAATTCTTTATCAGTGGTGGATTCGCTTTTGTCAA
TCCAGATGCATCATGTTACATCAACACCATCGAAGCCGTCCCAATCGACCAATTAGATGC
AGAGGGAAGTTAAAAATGGTTTAAGCTCGTTACACTCAACTCTACAATGATGCTCAAGAG
GGAAAATGCAAAAGCTGTCGCTTTAATTGGTTTGGAAACTTATCAACAAATGGGCATTTG
CTTGTGGTGTTT
Length of full length seq. 552