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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI672
Library VS
(Link to library)
Clone ID VSI672
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12590-1
Original site URL
Representative seq. ID VSI672P
(Link to Original site)
Representative DNA sequence 
>VSI672 (VSI672Q) /CSM/VS/VSI6-C/VSI672Q.Seq.d/
TAAATAAATAATAGATTAATAAATAAATAAATAAATAAATAATAAATTAATAAATTAATA
AATTGATAAATTAATCAGAAAATGGCAACAATCTTTGATATTTTAAATACTCTTAATAAT
AATAATTTTGAAAATTGTAAAAGACAATGCTCAACCAATAAAAGCAATAAAACAATTATT
GATATACTACCACCAATGGATGTAACAATTACAAATGATAAACTAATCATTGAAACAGAG
TTAGCAGGTATTTCAAAAGATCAAATTGAAATTGACATTAAAGATTCAATACTCACTATT
CAAGGTGAAAAGAAAAAGAATTTAAATAAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAATTAGTTATAGAAAAATCAACATCAACATCATCAACATTAGATAGAAAA
GAAGATGAAGCATCAATTGAAGAGTTTGAAGATGATATTAAACCAAAATCAAAATCTGAC
AACAGAACTGTATCTACTACAACCACCGCTACTAAAGAGAATAAAAAAGATGAAAAAACT
AATTAATTTTAATAAATAAATATAAATATAAAAATAAATAAATAAATAATAATAAATAAT
AAAAATAAAAATAATAATTTAAAATGATTTTAAAAAAAAAAXXXXXXXXXXTAAATAAAT
AATAGATTAATAAATAAATAAATAAATAAATAATAAATTAATAAATTAATAAATTGATAA
ATTAATCAGAAAATGGCAACAATCTTTGATATTTTAAATACTCTTAATAATAATAATTTT
GAAAATTGTAAAAGACAATGCTCAACCAATAAAAGCAATAAAACAATTATTGATATACTA
CCACCAATGGATGTAACAATTACAAATGATAAACTAATCATTGAAACAGAGTTAGCAGGT
ATTTCAAAAGATCAAATTGAAATTGACATTAAAGATTCAATACTCACTATTCAAGGTGAA
AAGAAAAAGAATTTAAATAAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAATTAGTTATAGAAAAATCAACATCAACATCATCAACATTAGATAGAAAAGAAGATGAA
GCATCAATTGAAGAGTTTGAAGATGATATTAAACCAAAATCAAAATCTGACAACAGAACT
GTATCTACTACAACCACCGCTACTAAAGAGAATAAAAAAGATGAAAAAACTAATTAATTT
TAATAAATAAATATAAATATAAAAATAAATAAATAAATANATAANATAAAATAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
nk**ink*ink*iin**inklin*sengnnl*yfkys****f*kl*ktmlnq*kq*nny*
ytttngcnnyk**tnh*nrvsryfkrsn*n*h*rfnthysr*kekefk*ttttttttttt
tttisyrkininiinir*krr*sin*rv*r*y*tkiki*qqnciyynhry*re*kr*kn*
lilinkykyknk*innnk**k*k**FKMILKKK---

---NK**ink*ink*iin**inklin*sengnnl*yfkys****f*kl*ktmlnq*kq*n
ny*ytttngcnnyk**tnh*nrvsryfkrsn*n*h*rfnthysr*kekefk*tttttttt
ttttttisyrkininiinir*krr*sin*rv*r*y*tkiki*qqnciyynhry*re*kr*
kn*lilinkykyknk*inx*xkik
Translated Amino Acid sequence (All Frames) 
Frame A:
*innrlink*ink**inklin**inqkmatifdilntlnnnnfenckrqcstnksnktii
dilppmdvtitndkliietelagiskdqieidikdsiltiqgekkknlnkqqqqqqqqqq
qqqqlviekststsstldrkedeasieefeddikpksksdnrtvsttttatkenkkdekt
n*f**ininikink*iiinnknknnnlk*f*kk---

---*innrliNK*ink**inklin**inqkmatifdilntlnnnnfenckrqcstnksnk
tiidilppmdvtitndkliietelagiskdqieidikdsiltiqgekkknlnkqqqqqqq
qqqqqqqlviekststsstldrkedeasieefeddikpksksdnrtvsttttatkenkkd
ektn*f**ininikink*ixxik*

Frame B:
k*iid**ink*innklin**idklirkwqqslif*illiiiilkivkdnaqpikaikqll
iyyhqwm*qlqmin*slkqs*qvfqkiklkltlkiqyslfkvkrkri*innnnnnnnnnn
nnnn*l*knqhqhhqh*iekkmkhqlkslkmilnqnqnlttelyllqppllkrikkmkkl
infnk*i*i*k*ink***iikikiii*ndfkkk---

---k*iid**iNK*innklin**idklirkwqqslif*illiiiilkivkdnaqpikaik
qlliyyhqwm*qlqmin*slkqs*qvfqkiklkltlkiqyslfkvkrkri*innnnnnnn
nnnnnnn*l*knqhqhhqh*iekkmkhqlkslkmilnqnqnlttelyllqppllkrikkm
kklinfnk*i*i*k*inkxix*nk

Frame C:
nk**ink*ink*iin**inklin*sengnnl*yfkys****f*kl*ktmlnq*kq*nny*
ytttngcnnyk**tnh*nrvsryfkrsn*n*h*rfnthysr*kekefk*ttttttttttt
tttisyrkininiinir*krr*sin*rv*r*y*tkiki*qqnciyynhry*re*kr*kn*
lilinkykyknk*innnk**k*k**FKMILKKK---

---NK**ink*ink*iin**inklin*sengnnl*yfkys****f*kl*ktmlnq*kq*n
ny*ytttngcnnyk**tnh*nrvsryfkrsn*n*h*rfnthysr*kekefk*tttttttt
ttttttisyrkininiinir*krr*sin*rv*r*y*tkiki*qqnciyynhry*re*kr*
kn*lilinkykyknk*inx*xkik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI828 (VSI828Q) /CSM/VS/VSI8-B/VSI828Q.Seq.d/                        502   e-141
VSI672 (VSI672Q) /CSM/VS/VSI6-C/VSI672Q.Seq.d/                        502   e-141
SHK484 (SHK484Q) /CSM/SH/SHK4-D/SHK484Q.Seq.d/                        472   e-132
SHK122 (SHK122Q) /CSM/SH/SHK1-A/SHK122Q.Seq.d/                        464   e-129
VSI335 (VSI335Q) /CSM/VS/VSI3-B/VSI335Q.Seq.d/                        452   e-126
VSI332 (VSI332Q) /CSM/VS/VSI3-B/VSI332Q.Seq.d/                        452   e-126
SSE777 (SSE777Q) /CSM/SS/SSE7-D/SSE777Q.Seq.d/                        432   e-120
VSI508 (VSI508Q) /CSM/VS/VSI5-A/VSI508Q.Seq.d/                        420   e-116
VSI531 (VSI531Q) /CSM/VS/VSI5-B/VSI531Q.Seq.d/                        402   e-111
VSH432 (VSH432Q) /CSM/VS/VSH4-B/VSH432Q.Seq.d/                        389   e-107
own update 2003. 1.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116967) Dictyostelium discoideum chromosome 2 map 5481549...   466   0.0    5
(AC116955) Dictyostelium discoideum chromosome 2 map 5455881...   472   0.0    5
(AU269065) Dictyostelium discoideum vegetative cDNA clone:VS...   502   0.0    2
(AU269064) Dictyostelium discoideum vegetative cDNA clone:VS...   502   0.0    2
(BJ407938) Dictyostelium discoideum cDNA clone:dds44k05, 3' ...   464   e-163  2
(AU271237) Dictyostelium discoideum vegetative cDNA clone:VS...   347   e-149  3
(AU269294) Dictyostelium discoideum vegetative cDNA clone:VS...   502   e-146  2
(BJ408144) Dictyostelium discoideum cDNA clone:dds44h22, 3' ...   472   e-143  2
(AU268802) Dictyostelium discoideum vegetative cDNA clone:VS...   396   e-139  3
(AU268839) Dictyostelium discoideum vegetative cDNA clone:VS...   402   e-137  4
dna update 2009. 7.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8MPA7) RecName: Full=Small heat shock protein hspG5;  &AC11695...   169   1e-40
(Q550E9) RecName: Full=Small heat shock protein hspG8;                165   3e-39
(Q86KF5) RecName: Full=Small heat shock protein hspG9;  &AC11696...   158   4e-37
(Q550E3) RecName: Full=Small heat shock protein hspG11;               135   2e-30
AC116967_6(AC116967|pid:none) Dictyostelium discoideum chromosom...   129   3e-28
AC116967_4(AC116967|pid:none) Dictyostelium discoideum chromosom...   126   2e-27
(Q552K9) RecName: Full=Small heat shock protein hspG2;                102   2e-20
(Q551G1) RecName: Full=Small heat shock protein hspG4;                101   6e-20
AC116550_9(AC116550|pid:none) Dictyostelium discoideum chromosom...    93   2e-17
(Q86I25) RecName: Full=Small heat shock protein hspG1;  &AC11630...    84   8e-15
protein update 2009. 3.24
PSORT -
5' end seq. ID VSI672F
5' end seq. 
>VSI672F.Seq
TAAATAAATAATAGATTAATAAATAAATAAATAAATAAATAATAAATTAATAAATTAATA
AATTGATAAATTAATCAGAAAATGGCAACAATCTTTGATATTTTAAATACTCTTAATAAT
AATAATTTTGAAAATTGTAAAAGACAATGCTCAACCAATAAAAGCAATAAAACAATTATT
GATATACTACCACCAATGGATGTAACAATTACAAATGATAAACTAATCATTGAAACAGAG
TTAGCAGGTATTTCAAAAGATCAAATTGAAATTGACATTAAAGATTCAATACTCACTATT
CAAGGTGAAAAGAAAAAGAATTTAAATAAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAATTAGTTATAGAAAAATCAACATCAACATCATCAACATTAGATAGAAAA
GAAGATGAAGCATCAATTGAAGAGTTTGAAGATGATATTAAACCAAAATCAAAATCTGAC
AACAGAACTGTATCTACTACAACCACCGCTACTAAAGAGAATAAAAAAGATGAAAAAACT
AATTAATTTTAATAAATAAATATAAATATAAAAATAAATAAATAAATAATAATAAATAAT
AAAAATAAAAATAATAATTTAAAATGATTTTAAAAAAAAAA----------
Length of 5' end seq. 641
3' end seq. ID VSI672Z
3' end seq. 
>VSI672Z.Seq
----------TAAATAAATAATAGATTAATAAATAAATAAATAAATAAATAATAAATTAA
TAAATTAATAAATTGATAAATTAATCAGAAAATGGCAACAATCTTTGATATTTTAAATAC
TCTTAATAATAATAATTTTGAAAATTGTAAAAGACAATGCTCAACCAATAAAAGCAATAA
AACAATTATTGATATACTACCACCAATGGATGTAACAATTACAAATGATAAACTAATCAT
TGAAACAGAGTTAGCAGGTATTTCAAAAGATCAAATTGAAATTGACATTAAAGATTCAAT
ACTCACTATTCAAGGTGAAAAGAAAAAGAATTTAAATAAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAATTAGTTATAGAAAAATCAACATCAACATCATCAACATT
AGATAGAAAAGAAGATGAAGCATCAATTGAAGAGTTTGAAGATGATATTAAACCAAAATC
AAAATCTGACAACAGAACTGTATCTACTACAACCACCGCTACTAAAGAGAATAAAAAAGA
TGAAAAAACTAATTAATTTTAATAAATAAATATAAATATAAAAATAAATAAATAAATANA
TAANATAAAATAAAA
Length of 3' end seq. 605
Connected seq. ID VSI672P
Connected seq. 
>VSI672P.Seq
TAAATAAATAATAGATTAATAAATAAATAAATAAATAAATAATAAATTAATAAATTAATA
AATTGATAAATTAATCAGAAAATGGCAACAATCTTTGATATTTTAAATACTCTTAATAAT
AATAATTTTGAAAATTGTAAAAGACAATGCTCAACCAATAAAAGCAATAAAACAATTATT
GATATACTACCACCAATGGATGTAACAATTACAAATGATAAACTAATCATTGAAACAGAG
TTAGCAGGTATTTCAAAAGATCAAATTGAAATTGACATTAAAGATTCAATACTCACTATT
CAAGGTGAAAAGAAAAAGAATTTAAATAAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAATTAGTTATAGAAAAATCAACATCAACATCATCAACATTAGATAGAAAA
GAAGATGAAGCATCAATTGAAGAGTTTGAAGATGATATTAAACCAAAATCAAAATCTGAC
AACAGAACTGTATCTACTACAACCACCGCTACTAAAGAGAATAAAAAAGATGAAAAAACT
AATTAATTTTAATAAATAAATATAAATATAAAAATAAATAAATAAATAATAATAAATAAT
AAAAATAAAAATAATAATTTAAAATGATTTTAAAAAAAAAA----------TAAATAAAT
AATAGATTAATAAATAAATAAATAAATAAATAATAAATTAATAAATTAATAAATTGATAA
ATTAATCAGAAAATGGCAACAATCTTTGATATTTTAAATACTCTTAATAATAATAATTTT
GAAAATTGTAAAAGACAATGCTCAACCAATAAAAGCAATAAAACAATTATTGATATACTA
CCACCAATGGATGTAACAATTACAAATGATAAACTAATCATTGAAACAGAGTTAGCAGGT
ATTTCAAAAGATCAAATTGAAATTGACATTAAAGATTCAATACTCACTATTCAAGGTGAA
AAGAAAAAGAATTTAAATAAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAATTAGTTATAGAAAAATCAACATCAACATCATCAACATTAGATAGAAAAGAAGATGAA
GCATCAATTGAAGAGTTTGAAGATGATATTAAACCAAAATCAAAATCTGACAACAGAACT
GTATCTACTACAACCACCGCTACTAAAGAGAATAAAAAAGATGAAAAAACTAATTAATTT
TAATAAATAAATATAAATATAAAAATAAATAAATAAATANATAANATAAAATAAAA
Length of connected seq. 1246
Full length Seq ID -
Full length Seq. -
Length of full length seq. -