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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI596
Library VS
(Link to library)
Clone ID VSI596
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04481-1
Original site URL
Representative seq. ID VSI596F
(Link to Original site)
Representative DNA sequence 
>VSI596 (VSI596Q) /CSM/VS/VSI5-D/VSI596Q.Seq.d/
CCCGCGTCCGCTTTTAAAAAAATACAAAATATTGGATCAACCTCTATTAGATTTTATTCA
ACTATAAAAAAAGGTAGATTAGATGGTAAAGTAGCATTAATTACAGGTGCAGCAGATGGT
GTTGGAAGAGAATCCTCATTATTATTTGCAAAAGAAGGTGCTAAAGTTTTATTAGTTGAT
GTAAATGATATTAAAGGTAAAGAAGTAGAATCATTAATTAAATCATCAGGTGGCGAAGCA
TCATTTTTTAGAGCTGACGTTAGTAAAGCATCCGATGTTAAAGAAATGATAGATGCTGTA
GAAAAAACATTTGGTAAATTATAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
PASAFKKIQNIGSTSIRFYSTIKKGRLDGKVALITGAADGVGRESSLLFAKEGAKVLLVD
VNDIKGKEVESLIKSSGGEASFFRADVSKASDVKEMIDAVEKTFGKL---
Translated Amino Acid sequence (All Frames) 
Frame A:
PASAFKKIQNIGSTSIRFYSTIKKGRLDGKVALITGAADGVGRESSLLFAKEGAKVLLVD
VNDIKGKEVESLIKSSGGEASFFRADVSKASDVKEMIDAVEKTFGKL---


Frame B:
prpllkkykildqplldfiql*kkvd*mvk*h*lqvqqmvleenphyylqkkvlkfy*lm
*milkvkk*nh*lnhqvakhhfleltlvkhpmlkk**ml*kkhlvny---


Frame C:
rvrf*kntkywinly*ilfnykkr*irw*ssinyrcsrwcwkriliiickrrc*sfis*c
k*y*r*rsriin*iirwrsiif*s*r**sirc*rndrccrkniw*i---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI596 (VSI596Q) /CSM/VS/VSI5-D/VSI596Q.Seq.d/                        557   e-158
SSG446 (SSG446Q) /CSM/SS/SSG4-B/SSG446Q.Seq.d/                        535   e-151
SSB188 (SSB188Q) /CSM/SS/SSB1-D/SSB188Q.Seq.d/                        297   5e-80
SSM267 (SSM267Q) /CSM/SS/SSM2-C/SSM267Q.Seq.d/                        172   2e-42
VSF642 (VSF642Q) /CSM/VS/VSF6-B/VSF642Q.Seq.d/                         68   9e-11
VFK327 (VFK327Q) /CSM/VF/VFK3-B/VFK327Q.Seq.d/                         38   0.081
VFA337 (VFA337Q) /CSM/VF/VFA3-B/VFA337Q.Seq.d/                         38   0.081
SSK622 (SSK622Q) /CSM/SS/SSK6-A/SSK622Q.Seq.d/                         38   0.081
SFK341 (SFK341Q) /CSM/SF/SFK3-B/SFK341Q.Seq.d/                         38   0.081
SFC693 (SFC693Q) /CSM/SF/SFC6-D/SFC693Q.Seq.d/                         38   0.081
own update 2001.11.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268943) Dictyostelium discoideum vegetative cDNA clone:VS...   498   e-159  3
(AU073230) Dictyostelium discoideum slug cDNA, clone SSG446.      327   e-105  2
(AU071299) Dictyostelium discoideum slug cDNA, clone SSB188.      176   2e-77  3
(AU039008) Dictyostelium discoideum slug cDNA, clone SSM267.      172   5e-39  1
(AP006716) Staphylococcus haemolyticus JCSC1435 DNA, complet...    54   2e-07  2
(AU265545) Dictyostelium discoideum vegetative cDNA clone:VS...    68   2e-07  1
(GR014599) CCIC5750.b1 CCIC Mimulus guttatus IM62 roots (H) ...    34   0.013  3
(DI046590) Enterococcus faecalis polynucleotides and polypep...    50   0.036  2
(BD193644) Enterococcus faecialis polynucleotides and polype...    50   0.036  2
(EK108020) 1092963071287 Global-Ocean-Sampling_GS-31-01-01-1...    36   0.043  2
dna update 2009. 7.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001344_1735(CP001344|pid:none) Cyanothece sp. PCC 7425, comple...   100   3e-20
AP006840_2304(AP006840|pid:none) Symbiobacterium thermophilum IA...    85   7e-16
CP000817_847(CP000817|pid:none) Lysinibacillus sphaericus C3-41,...    85   9e-16
CP001251_1702(CP001251|pid:none) Dictyoglomus turgidum DSM 6724,...    82   6e-15
CP000879_704(CP000879|pid:none) Petrotoga mobilis SJ95, complete...    81   9e-15
CP001146_1586(CP001146|pid:none) Dictyoglomus thermophilum H-6-1...    81   9e-15
CP001337_2661(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    80   2e-14
BA000028_3183(BA000028|pid:none) Oceanobacillus iheyensis HTE831...    80   2e-14
CP001145_541(CP001145|pid:none) Coprothermobacter proteolyticus ...    80   3e-14
CP001337_1567(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    79   4e-14
protein update 2009. 3.24
PSORT 

 psg: 0.76  gvh: 0.41  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 36.0 %: cytoplasmic
	 20.0 %: nuclear
	  4.0 %: peroxisomal

>> prediction for VSI596 is mit
5' end seq. ID VSI596F
5' end seq. 
>VSI596F.Seq
CCCGCGTCCGCTTTTAAAAAAATACAAAATATTGGATCAACCTCTATTAGATTTTATTCA
ACTATAAAAAAAGGTAGATTAGATGGTAAAGTAGCATTAATTACAGGTGCAGCAGATGGT
GTTGGAAGAGAATCCTCATTATTATTTGCAAAAGAAGGTGCTAAAGTTTTATTAGTTGAT
GTAAATGATATTAAAGGTAAAGAAGTAGAATCATTAATTAAATCATCAGGTGGCGAAGCA
TCATTTTTTAGAGCTGACGTTAGTAAAGCATCCGATGTTAAAGAAATGATAGATGCTGTA
GAAAAAACATTTGGTAAATTATA----------
Length of 5' end seq. 323
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -