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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI588
Library VS
(Link to library)
Clone ID VSI588
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U06953-1
Original site URL
Representative seq. ID VSI588F
(Link to Original site)
Representative DNA sequence 
>VSI588 (VSI588Q) /CSM/VS/VSI5-D/VSI588Q.Seq.d/
ATTTTATAAATGTTATCATTCTATCCTAAAAATGTTATTACCGGCTCTTTAATTAGGCCA
GGACCTACAATATTTCCAGCAGGTTCGAACTCTGGTGGTAAACCAACTCCAGCAATATCA
ATTAAACAAACATTTAAAATCTAAATAAATTAAAAAGAAGAAAATAATTCTTTAATTTCA
ATTTCAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
il*MLSFYPKNVITGSLIRPGPTIFPAGSNSGGKPTPAISIKQTFKI*in*keennslis
iskk---
Translated Amino Acid sequence (All Frames) 
Frame A:
il*MLSFYPKNVITGSLIRPGPTIFPAGSNSGGKPTPAISIKQTFKI*in*keennslis
iskk---


Frame B:
fykcyhsilkmllpal*lgqdlqyfqqvrtlvvnqlqqyqlnkhlksk*ikkkkiil*fq
fqkk---


Frame C:
finviils*kcyyrlfn*artynissrfelww*tnssnin*tni*nlnklkrrk*ffnfn
fkkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI588 (VSI588Q) /CSM/VS/VSI5-D/VSI588Q.Seq.d/                        256   1e-67
VSD631 (VSD631Q) /CSM/VS/VSD6-B/VSD631Q.Seq.d/                         32   3.0
VHO260 (VHO260Q) /CSM/VH/VHO2-C/VHO260Q.Seq.d/                         32   3.0
VHM713 (VHM713Q) /CSM/VH/VHM7-A/VHM713Q.Seq.d/                         32   3.0
VHC342 (VHC342Q) /CSM/VH/VHC3-B/VHC342Q.Seq.d/                         32   3.0
VFD423 (VFD423Q) /CSM/VF/VFD4-A/VFD423Q.Seq.d/                         32   3.0
SSD369 (SSD369Q) /CSM/SS/SSD3-C/SSD369Q.Seq.d/                         32   3.0
SSA619 (SSA619Q) /CSM/SS/SSA6-A/SSA619Q.Seq.d/                         32   3.0
FC-AX01 (FC-AX01Q) /CSM/FC/FC-AX/FC-AX01Q.Seq.d/                       32   3.0
CHD531 (CHD531Q) /CSM/CH/CHD5-B/CHD531Q.Seq.d/                         32   3.0
own update 2004. 8. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268932) Dictyostelium discoideum vegetative cDNA clone:VS...   236   3e-58  1
(AC116551) Dictyostelium discoideum chromosome 2 map complem...   165   7e-49  2
(CZ522029) GMW2-67H14a.b2 GMW2 Glycine max genomic, genomic ...    26   1.1    3
(ED717301) GM_WBb0067H14.f GM_WBb Glycine max genomic clone ...    26   1.2    3
(AM488799) Vitis vinifera contig VV78X098962.9, whole genome...    34   4.1    2
(AP002801) Homo sapiens genomic DNA, chromosome 11q, clone:R...    42   7.8    1
(AC021130) Homo sapiens chromosome 11 clone RP11-382C9, WORK...    42   7.8    1
(AQ239172) RPCI11-64E23.TJ RPCI-11 Homo sapiens genomic clon...    42   7.8    1
dna update 2009. 7.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116551_45(AC116551|pid:none) Dictyostelium discoideum chromoso...    50   2e-05
protein update 2009. 3.24
PSORT 

 psg: 0.85  gvh: 0.34  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 32.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for VSI588 is mit
5' end seq. ID VSI588F
5' end seq. 
>VSI588F.Seq
ATTTTATAAATGTTATCATTCTATCCTAAAAATGTTATTACCGGCTCTTTAATTAGGCCA
GGACCTACAATATTTCCAGCAGGTTCGAACTCTGGTGGTAAACCAACTCCAGCAATATCA
ATTAAACAAACATTTAAAATCTAAATAAATTAAAAAGAAGAAAATAATTCTTTAATTTCA
ATTTCAAAAAAAAAA----------
Length of 5' end seq. 195
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -