VSI551
Library VS
(Link to library)
Clone ID VSI551
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16468-1
Original site URL
Representative seq. ID VSI551P
(Link to Original site)
Representative DNA sequence
>VSI551 (VSI551Q) /CSM/VS/VSI5-C/VSI551Q.Seq.d/
GGCAAAACTGCAGTTTGTGTAATTAAAGGTGAAAAAGTTAACGGTGTTGTTAAATTCACT
CAAGAAAATAAAGACTCACCAGTCACTGTTAATTATGATATCACTGGTTTAGAAAAAGGT
GAACACGGTTTCCACGTTCATGCTTTTGGTGATACAACCAATGGTTGTGTTAGTGCTGGT
CCACATTTTAACCCATTTGGTAAAAATCATGGTGCTCCATCAGATGAAGATCGTCATGTT
GGTGATTTAGGTAACATTGTTGCCGATGGTGAGTCAAATACCAAAGGTACCATCAGTGAT
AAAATTATCTCCCTCTTTGGTGAACACACAATCGTTGGTAGAACTATGGTTGTCCATGCT
GATCAAGATGATTTAGGTAAAGGTGGTAAACCAGATTCCTTAACTACTGGTGCTGCTGGT
GCTCGTCTTGGTTGTGGTGTCATTGGTGTCTCTCAATAAATTTCAAACTAAAATAAAACC
CTGTTAAATATAAAAAAAAAAXXXXXXXXXXCAAAACTGCAGTTTGTGTAATTAAAGGTG
AAAAAGTTAACGGTGTTGTTAAATTCACTCAAGAAAATAAAGACTCACCAGTCACTGTTA
ATTATGATATCACTGGTTTAGAAAAAGGTGAACACGGTTTCCACGTTCATGCTTTTGGTG
ATACAACCAATGGTTGTGTTAGTGCTGGTCCACATTTTAACCCATTTGGTAAAAATCATG
GTGCTCCATCAGATGAAGATCGTCATGTTGGTGATTTAGGTAACATTGTTGCCGATGGTG
AGTCAAATACCAAAGGTACCATCAGTGATAAAATTATCTCCCTCTTTGGTGAACACACAA
TCGTTGGTAGAACTATGGTTGTCCATGCTGATCAAGATGATTTAGGTAAAGGTGGTAAAC
CAGATTCCTTAACTACTGGTGCTGCTGGTGACTCGTACTTGGTTGTGGTGTCATTGGTGT
CTCTCAATAAATTTCAAACTAA
sequence update 2001. 3.22
Translated Amino Acid sequence
gktavcvikgekvngvvkftqenkdspvtvnyditglekgehgfhvhafgdttngcvsag
phfnpfgknhgapsdedrhvgdlgnivadgesntkgtisdkiislfgehtivgrtmvvha
dqddlgkggkpdslttgaagarlgcgvigvsq*isn*NKTLLNIKKK---

---KTAVCVIKGEKVNGVVKFTQENKDSPVTVNYDITGLEKGEHGFHVHAFGDTTNGCVS
AGPHFNPFGKNHGAPSDEDRHVGDLGNIVADGESNTKGTISDKIISLFGEHTIVGRTMVV
HADQDDLGKGGKPDSLTTGAAGDSYLVVVSLVSLNKFQT


Translated Amino Acid sequence (All Frames)
Frame A:
gktavcvikgekvngvvkftqenkdspvtvnyditglekgehgfhvhafgdttngcvsag
phfnpfgknhgapsdedrhvgdlgnivadgesntkgtisdkiislfgehtivgrtmvvha
dqddlgkggkpdslttgaagarlgcgvigvsq*isn*NKTLLNIKKK---

---qncslcn*r*ks*rcc*ihsrk*rltshc*l*yhwfrkr*trfprscfw*ynqwlc*
cwstf*piw*kswcsir*rsscw*fr*hccrw*vkyqryhq**nylplw*thnrw*nygc
pc*sr*fr*rw*trflnywccw*lvlgcgvigvsq*isn*

Frame B:
aklqfv*lkvkkltvllnslkkikthqsllimislv*kkvntvstfmllviqpmvvlvlv
hilthlvkimvlhqmkivmlvi*vtllpmvsqipkvpsviklspslvntqslvelwlsml
ikmi*vkvvnqip*llvllvlvlvvvslvslnkfqtkikpc*i*kk---

---KTAVCVIKGEKVNGVVKFTQENKDSPVTVNYDITGLEKGEHGFHVHAFGDTTNGCVS
AGPHFNPFGKNHGAPSDEDRHVGDLGNIVADGESNTKGTISDKIISLFGEHTIVGRTMVV
HADQDDLGKGGKPDSLTTGAAGDSYLVVVSLVSLNKFQT

Frame C:
qncslcn*r*ks*rcc*ihsrk*rltshc*l*yhwfrkr*trfprscfw*ynqwlc*cws
tf*piw*kswcsir*rsscw*fr*hccrw*vkyqryhq**nylplw*thnrw*nygcpc*
sr*fr*rw*trflnywccwcsswlwchwclsinfklk*npvkykkk---

---klqfv*lkvkkltvllnslkkikthqsllimislv*kkvntvstfmllviqpmvvlv
lvhilthlvkimvlhqmkivmlvi*vtllpmvsqipkvpsviklspslvntqslvelwls
mlikmi*vkvvnqip*llvllvtrtwlwchwclsinfkl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSI551 (VSI551Q) /CSM/VS/VSI5-C/VSI551Q.Seq.d/ 973 0.0
VSJ163 (VSJ163Q) /CSM/VS/VSJ1-C/VSJ163Q.Seq.d/ 969 0.0
VSI439 (VSI439Q) /CSM/VS/VSI4-B/VSI439Q.Seq.d/ 969 0.0
VSI406 (VSI406Q) /CSM/VS/VSI4-A/VSI406Q.Seq.d/ 969 0.0
VSE508 (VSE508Q) /CSM/VS/VSE5-A/VSE508Q.Seq.d/ 969 0.0
VSD473 (VSD473Q) /CSM/VS/VSD4-D/VSD473Q.Seq.d/ 969 0.0
VSD277 (VSD277Q) /CSM/VS/VSD2-D/VSD277Q.Seq.d/ 969 0.0
VSD215 (VSD215Q) /CSM/VS/VSD2-A/VSD215Q.Seq.d/ 969 0.0
VSC282 (VSC282Q) /CSM/VS/VSC2-D/VSC282Q.Seq.d/ 969 0.0
VSC179 (VSC179Q) /CSM/VS/VSC1-D/VSC179Q.Seq.d/ 969 0.0

own update 2001.11.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU268872) Dictyostelium discoideum vegetative cDNA clone:VS... 973 0.0 1
(AU269502) Dictyostelium discoideum vegetative cDNA clone:VS... 969 0.0 1
(AU268695) Dictyostelium discoideum vegetative cDNA clone:VS... 969 0.0 1
(AU268645) Dictyostelium discoideum vegetative cDNA clone:VS... 969 0.0 1
(AU264091) Dictyostelium discoideum vegetative cDNA clone:VS... 969 0.0 1
(AU263764) Dictyostelium discoideum vegetative cDNA clone:VS... 969 0.0 1
(AU263663) Dictyostelium discoideum vegetative cDNA clone:VS... 969 0.0 1
(AU263156) Dictyostelium discoideum vegetative cDNA clone:VS... 969 0.0 1
(AU262452) Dictyostelium discoideum vegetative cDNA clone:VS... 969 0.0 1
(AU262382) Dictyostelium discoideum vegetative cDNA clone:VS... 969 0.0 1
dna update 2009. 7.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55GQ5) RecName: Full=Superoxide dismutase [Cu-Zn] 1; ... 315 2e-84
BC167137_1(BC167137|pid:none) Xenopus tropicalis hypothetical pr... 231 4e-59
DQ886903_1(DQ886903|pid:none) Argas monolakensis superoxide-dism... 200 5e-50
(Q07182) RecName: Full=Superoxide dismutase [Cu-Zn]; EC... 199 1e-49
(Q9U4X3) RecName: Full=Superoxide dismutase [Cu-Zn]; EC... 197 4e-49
EF070566_1(EF070566|pid:none) Maconellicoccus hirsutus clone WHM... 197 6e-49
(O73872) RecName: Full=Superoxide dismutase [Cu-Zn]; EC... 196 1e-48
(P10791) RecName: Full=Superoxide dismutase [Cu-Zn]; EC... 196 1e-48
AY736280_1(AY736280|pid:none) Trematomus bernacchii Cu/Zn supero... 195 2e-48
AY449747_1(AY449747|pid:none) Haliotis diversicolor supertexta C... 195 2e-48
protein update 2009. 3.24
PSORT

psg: 0.81 gvh: 0.27 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for VSI551 is cyt

5' end seq. ID VSI551F
5' end seq.
>VSI551F.Seq
GGCAAAACTGCAGTTTGTGTAATTAAAGGTGAAAAAGTTAACGGTGTTGTTAAATTCACT
CAAGAAAATAAAGACTCACCAGTCACTGTTAATTATGATATCACTGGTTTAGAAAAAGGT
GAACACGGTTTCCACGTTCATGCTTTTGGTGATACAACCAATGGTTGTGTTAGTGCTGGT
CCACATTTTAACCCATTTGGTAAAAATCATGGTGCTCCATCAGATGAAGATCGTCATGTT
GGTGATTTAGGTAACATTGTTGCCGATGGTGAGTCAAATACCAAAGGTACCATCAGTGAT
AAAATTATCTCCCTCTTTGGTGAACACACAATCGTTGGTAGAACTATGGTTGTCCATGCT
GATCAAGATGATTTAGGTAAAGGTGGTAAACCAGATTCCTTAACTACTGGTGCTGCTGGT
GCTCGTCTTGGTTGTGGTGTCATTGGTGTCTCTCAATAAATTTCAAACTAAAATAAAACC
CTGTTAAATATAAAAAAAAAA----------
Length of 5' end seq. 501
3' end seq. ID VSI551Z
3' end seq.
>VSI551Z.Seq
----------CAAAACTGCAGTTTGTGTAATTAAAGGTGAAAAAGTTAACGGTGTTGTTA
AATTCACTCAAGAAAATAAAGACTCACCAGTCACTGTTAATTATGATATCACTGGTTTAG
AAAAAGGTGAACACGGTTTCCACGTTCATGCTTTTGGTGATACAACCAATGGTTGTGTTA
GTGCTGGTCCACATTTTAACCCATTTGGTAAAAATCATGGTGCTCCATCAGATGAAGATC
GTCATGTTGGTGATTTAGGTAACATTGTTGCCGATGGTGAGTCAAATACCAAAGGTACCA
TCAGTGATAAAATTATCTCCCTCTTTGGTGAACACACAATCGTTGGTAGAACTATGGTTG
TCCATGCTGATCAAGATGATTTAGGTAAAGGTGGTAAACCAGATTCCTTAACTACTGGTG
CTGCTGGTGACTCGTACTTGGTTGTGGTGTCATTGGTGTCTCTCAATAAATTTCAAACTA
A
Length of 3' end seq. 471
Connected seq. ID VSI551P
Connected seq.
>VSI551P.Seq
GGCAAAACTGCAGTTTGTGTAATTAAAGGTGAAAAAGTTAACGGTGTTGTTAAATTCACT
CAAGAAAATAAAGACTCACCAGTCACTGTTAATTATGATATCACTGGTTTAGAAAAAGGT
GAACACGGTTTCCACGTTCATGCTTTTGGTGATACAACCAATGGTTGTGTTAGTGCTGGT
CCACATTTTAACCCATTTGGTAAAAATCATGGTGCTCCATCAGATGAAGATCGTCATGTT
GGTGATTTAGGTAACATTGTTGCCGATGGTGAGTCAAATACCAAAGGTACCATCAGTGAT
AAAATTATCTCCCTCTTTGGTGAACACACAATCGTTGGTAGAACTATGGTTGTCCATGCT
GATCAAGATGATTTAGGTAAAGGTGGTAAACCAGATTCCTTAACTACTGGTGCTGCTGGT
GCTCGTCTTGGTTGTGGTGTCATTGGTGTCTCTCAATAAATTTCAAACTAAAATAAAACC
CTGTTAAATATAAAAAAAAAA----------CAAAACTGCAGTTTGTGTAATTAAAGGTG
AAAAAGTTAACGGTGTTGTTAAATTCACTCAAGAAAATAAAGACTCACCAGTCACTGTTA
ATTATGATATCACTGGTTTAGAAAAAGGTGAACACGGTTTCCACGTTCATGCTTTTGGTG
ATACAACCAATGGTTGTGTTAGTGCTGGTCCACATTTTAACCCATTTGGTAAAAATCATG
GTGCTCCATCAGATGAAGATCGTCATGTTGGTGATTTAGGTAACATTGTTGCCGATGGTG
AGTCAAATACCAAAGGTACCATCAGTGATAAAATTATCTCCCTCTTTGGTGAACACACAA
TCGTTGGTAGAACTATGGTTGTCCATGCTGATCAAGATGATTTAGGTAAAGGTGGTAAAC
CAGATTCCTTAACTACTGGTGCTGCTGGTGACTCGTACTTGGTTGTGGTGTCATTGGTGT
CTCTCAATAAATTTCAAACTAA
Length of connected seq. 972
Full length Seq ID -
Full length Seq. -
Length of full length seq. -