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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI532
Library VS
(Link to library)
Clone ID VSI532
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15504-1
Original site URL
Representative seq. ID VSI532E
(Link to Original site)
Representative DNA sequence 
>VSI532 (VSI532Q) /CSM/VS/VSI5-B/VSI532Q.Seq.d/
CATATACACAGAAAAAGTTATCACAGAATGAGAGTTTTCAAAGATATTGTTGGTTATTCA
CATGATGAATTATGCTCAGATGCCTACCCAATGACTGAAATCAACAATGGTTTAATCTAT
GAAGTCCAAGCTAAAATGGTCACCATTGATTTAGATGTTAAAGTTAACACTGGTGCCAAC
GCTGCTTCTGAAGAAACCGAAGAAGATGAAGGTGTTGATAATGCTGGTAGCAAACAAGTT
ATCAACGTTGTTGATGCTATGAGACTTGTTGAAACCTCATTCGATAAAAAATCCTACACT
GGTTACATTAAAGCTTACATGAAGGAAGTTCTTGCCAAACTCGCTGACAATAACCCAAGC
CGTGTTGACGCCTTCAAAAAGGATGCCGCTGATTTTGTCAAATCAGTTCTCGGTAAATTC
GACGAATACAAATTCTACACTGGTGAAAATATGGATGCTGATGGTCATGTCGCTTTAATG
TACTACAAACCAGGTGAAGTTGATCCAATCTTTTTATACTTCAAAGACGGTTTAGAATCA
GTTAAATATTAAAATAATTTTTTCAAAGTGTTATAATAAA
sequence update 2001. 3.26
Translated Amino Acid sequence 
HIHRKSYHRMRVFKDIVGYSHDELCSDAYPMTEINNGLIYEVQAKMVTIDLDVKVNTGAN
AASEETEEDEGVDNAGSKQVINVVDAMRLVETSFDKKSYTGYIKAYMKEVLAKLADNNPS
RVDAFKKDAADFVKSVLGKFDEYKFYTGENMDADGHVALMYYKPGEVDPIFLYFKDGLES
VKY*nnffkvl**
Translated Amino Acid sequence (All Frames) 
Frame A:
HIHRKSYHRMRVFKDIVGYSHDELCSDAYPMTEINNGLIYEVQAKMVTIDLDVKVNTGAN
AASEETEEDEGVDNAGSKQVINVVDAMRLVETSFDKKSYTGYIKAYMKEVLAKLADNNPS
RVDAFKKDAADFVKSVLGKFDEYKFYTGENMDADGHVALMYYKPGEVDPIFLYFKDGLES
VKY*nnffkvl**


Frame B:
iytekvite*efskillvihmmnyaqmptq*lkstmv*smksklkwspli*mlkltlvpt
lllkkpkkmkvlimlvanklstllml*dllkphsiknptlvtlklt*rkflpnsltitqa
vltpskrmplilsnqfsvnstntnstlvkiwmlmvmsl*cttnqvkliqsfytsktv*nq
lnikiifskcynk


Frame C:
ytqkklsqnesfqrycwlft**imlrclpnd*nqqwfnl*sps*nghh*frc*s*hwcqr
cf*rnrrr*rc**cw*qtsyqrc*cyetc*nlir*kilhwlh*slhegsscqtr*q*pkp
c*rlqkgcr*fcqissr*irriqilhw*kygc*wscrfnvlqtr*s*snlfilqrrfris
*ilk*ffqsvii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI532 (VSI532Q) /CSM/VS/VSI5-B/VSI532Q.Seq.d/                       1150   0.0
VSG456 (VSG456Q) /CSM/VS/VSG4-C/VSG456Q.Seq.d/                       1150   0.0
VSG107 (VSG107Q) /CSM/VS/VSG1-A/VSG107Q.Seq.d/                       1150   0.0
VSD180 (VSD180Q) /CSM/VS/VSD1-D/VSD180Q.Seq.d/                       1150   0.0
VSA456 (VSA456Q) /CSM/VS/VSA4-C/VSA456Q.Seq.d/                       1150   0.0
VSA126 (VSA126Q) /CSM/VS/VSA1-B/VSA126Q.Seq.d/                       1150   0.0
VHJ547 (VHJ547Q) /CSM/VH/VHJ5-B/VHJ547Q.Seq.d/                       1150   0.0
FC-AE21 (FC-AE21Q) /CSM/FC/FC-AE/FC-AE21Q.Seq.d/                     1150   0.0
FC-104 (FC-104Q) /CSM/CG/CG-FC/FC-104Q.Seq.d/                        1150   0.0
SSG560 (SSG560Q) /CSM/SS/SSG5-C/SSG560Q.Seq.d/                       1148   0.0
own update 2003. 1.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU266509) Dictyostelium discoideum vegetative cDNA clone:VS...  1150   0.0    1
(AU265977) Dictyostelium discoideum vegetative cDNA clone:VS...  1150   0.0    1
(AU263604) Dictyostelium discoideum vegetative cDNA clone:VS...  1150   0.0    1
(AU261489) Dictyostelium discoideum vegetative cDNA clone:VS...  1150   0.0    1
(AU261296) Dictyostelium discoideum vegetative cDNA clone:VS...  1150   0.0    1
(C23686) Dictyostelium discoideum gamete cDNA, clone FC-AE21.    1150   0.0    1
(BJ442607) Dictyostelium discoideum cDNA clone:ddv50m11, 3' ...  1150   0.0    1
(BJ423789) Dictyostelium discoideum cDNA clone:ddv50m11, 5' ...  1150   0.0    1
(C92015) Dictyostelium discoideum slug cDNA, clone SSC805.       1148   0.0    1
(C89872) Dictyostelium discoideum slug cDNA, clone SSG560.       1148   0.0    1
dna update 2009. 7.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q10344) RecName: Full=Translationally-controlled tumor protein ...   150   3e-35
(Q4PF30) RecName: Full=Translationally-controlled tumor protein ...   144   2e-33
(Q6C4G1) RecName: Full=Translationally-controlled tumor protein ...   132   8e-30
DQ324044_1(DQ324044|pid:none) Cyprinus carpio translationally-co...   131   1e-29
(Q4IJT5) RecName: Full=Translationally-controlled tumor protein ...   131   1e-29
(Q9DGK4) RecName: Full=Translationally-controlled tumor protein;...   131   1e-29
(Q5A860) RecName: Full=Translationally-controlled tumor protein ...   130   2e-29
FM992695_83(FM992695|pid:none) Candida dubliniensis CD36 chromos...   130   2e-29
CP000500_406(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...   130   2e-29
AB372535_1(AB372535|pid:none) Cadophora gregata f. sp. adzukicol...   130   2e-29
protein update 2009. 3.24
PSORT 

 psg: 0.70  gvh: 0.39  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for VSI532 is cyt
5' end seq. ID VSI532F
5' end seq. 
>VSI532F.Seq
CATATACACAGAAAAAGTTATCACAGAATGAGAGTTTTCAAAGATATTGTTGGTTATTCA
CATGATGAATTATGCTCAGATGCCTACCCAATGACTGAAATCAACAATGGTTTAATCTAT
GAAGTCCAAGCTAAAATGGTCACCATTGATTTAGATGTTAAAGTTAACACTGGTGCCAAC
GCTGCTTCTGAAGAAACCGAAGAAGATGAAGGTGTTGATAATGCTGGTAGCAAACAAGTT
ATCAACGTTGTTGATGCTATGAGACTTGTTGAAACCTCATTCGATAAAAAATCCTACACT
GGTTACATTAAAGCTTACATGAAGGAAGTTCTTGCCAAACTCGCTGACAATAACCCAAGC
CGTGTTGACGCCTTCAAAAAGGATGCCGCTGATTTTGTCAAATCAGTTCTCGGTAAATTC
GACGAATACAAATTCTACACTGGTGAAAATATGGATGCTGATGGTCATGTCGCTTTAATG
TACTACAA----------
Length of 5' end seq. 488
3' end seq. ID VSI532Z
3' end seq. 
>VSI532Z.Seq
----------AAATCCTACACTGGTTACATTAAAGCTTACATGAAGGAAGTTCTTGCCAA
ACTCGCTGACAATAACCCAAGCCGTGTTGACGCCTTCAAAAAGGATGCCGCTGATTTTGT
CAAATCAGTTCTCGGTAAATTCGACGAATACAAATTCTACACTGGTGAAAATATGGATGC
TGATGGTCATGTCGCTTTAATGTACTACAAACCAGGTGAAGTTGATCCAATCTTTTTATA
CTTCAAAGACGGTTTAGAATCAGTTAAATATTAAAATAATTTTTTCAAAGTGTTATAATA
AA
Length of 3' end seq. 292
Connected seq. ID VSI532P
Connected seq. 
>VSI532P.Seq
CATATACACAGAAAAAGTTATCACAGAATGAGAGTTTTCAAAGATATTGTTGGTTATTCA
CATGATGAATTATGCTCAGATGCCTACCCAATGACTGAAATCAACAATGGTTTAATCTAT
GAAGTCCAAGCTAAAATGGTCACCATTGATTTAGATGTTAAAGTTAACACTGGTGCCAAC
GCTGCTTCTGAAGAAACCGAAGAAGATGAAGGTGTTGATAATGCTGGTAGCAAACAAGTT
ATCAACGTTGTTGATGCTATGAGACTTGTTGAAACCTCATTCGATAAAAAATCCTACACT
GGTTACATTAAAGCTTACATGAAGGAAGTTCTTGCCAAACTCGCTGACAATAACCCAAGC
CGTGTTGACGCCTTCAAAAAGGATGCCGCTGATTTTGTCAAATCAGTTCTCGGTAAATTC
GACGAATACAAATTCTACACTGGTGAAAATATGGATGCTGATGGTCATGTCGCTTTAATG
TACTACAA----------AAATCCTACACTGGTTACATTAAAGCTTACATGAAGGAAGTT
CTTGCCAAACTCGCTGACAATAACCCAAGCCGTGTTGACGCCTTCAAAAAGGATGCCGCT
GATTTTGTCAAATCAGTTCTCGGTAAATTCGACGAATACAAATTCTACACTGGTGAAAAT
ATGGATGCTGATGGTCATGTCGCTTTAATGTACTACAAACCAGGTGAAGTTGATCCAATC
TTTTTATACTTCAAAGACGGTTTAGAATCAGTTAAATATTAAAATAATTTTTTCAAAGTG
TTATAATAAA
Length of connected seq. 780
Full length Seq ID VSI532E
Full length Seq. 
>VSI532E.Seq
CATATACACAGAAAAAGTTATCACAGAATGAGAGTTTTCAAAGATATTGTTGGTTATTCA
CATGATGAATTATGCTCAGATGCCTACCCAATGACTGAAATCAACAATGGTTTAATCTAT
GAAGTCCAAGCTAAAATGGTCACCATTGATTTAGATGTTAAAGTTAACACTGGTGCCAAC
GCTGCTTCTGAAGAAACCGAAGAAGATGAAGGTGTTGATAATGCTGGTAGCAAACAAGTT
ATCAACGTTGTTGATGCTATGAGACTTGTTGAAACCTCATTCGATAAAAAATCCTACACT
GGTTACATTAAAGCTTACATGAAGGAAGTTCTTGCCAAACTCGCTGACAATAACCCAAGC
CGTGTTGACGCCTTCAAAAAGGATGCCGCTGATTTTGTCAAATCAGTTCTCGGTAAATTC
GACGAATACAAATTCTACACTGGTGAAAATATGGATGCTGATGGTCATGTCGCTTTAATG
TACTACAAACCAGGTGAAGTTGATCCAATCTTTTTATACTTCAAAGACGGTTTAGAATCA
GTTAAATATTAAAATAATTTTTTCAAAGTGTTATAATAAA
Length of full length seq. 580