VSI526
Library VS
(Link to library)
Clone ID VSI526
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSI526F
(Link to Original site)
Representative DNA sequence
>VSI526 (VSI526Q) /CSM/VS/VSI5-B/VSI526Q.Seq.d/
TTTTTTNNTNTNAAAAAATTTTTNAAAAAAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence
FFXXKKFXKK---


Translated Amino Acid sequence (All Frames)
Frame A:
FFXXKKFXKK---


Frame B:
fxxxknfxkk---


Frame C:
fxxxkifxkk---


Homology vs CSM-cDNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3805
Number of Sequences: 97611
Number of extensions: 3805
Number of successful extensions: 3805
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 43
length of database: 80,480,566
effective HSP length: 16
effective length of query: 27
effective length of database: 78,918,790
effective search space: 2130807330
effective search space used: 2130807330
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)








Dictyostelium discoideum cDNA Project Home



own update 2009. 4. 4
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 21,229,741
Number of extensions: 2172703
Number of successful extensions: 1489304
Number of sequences better than 10.0: 0
Length of query: 43
Length of database: 104,622,809,269
Length adjustment: 21
Effective length of query: 22
Effective length of database: 102,402,190,351
Effective search space: 2252848187722
Effective search space used: 2252848187722
X1: 11 (21.8 bits)
S2: 19 (38.2 bits)









Dictyostelium discoideum cDNA Project Home



dna update 2009. 7.23
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 11,768,451
protein update 2009. 3.24
PSORT -
5' end seq. ID VSI526F
5' end seq.
>VSI526F.Seq
TTTTTTNNTNTNAAAAAATTTTTNAAAAAAAAA----------
Length of 5' end seq. 33
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -