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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI503
Library VS
(Link to library)
Clone ID VSI503
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U05906-1
Original site URL
Representative seq. ID VSI503P
(Link to Original site)
Representative DNA sequence 
>VSI503 (VSI503Q) /CSM/VS/VSI5-A/VSI503Q.Seq.d/
CTGAATCAATTTCAAAAGTGAAAGAAATCCTTCAAAAATTGACAGCTATGGTTTATAAAA
GTTTTTATGATGAAGAAAGAATTATTATACCTGTTGTTTTAAGTTCAATCCCAAAGAGTA
AACAAAATAAATTGGGTGAGAAAATGAATGAAACTATGAAAAATGCACCAACTTCTAAAT
TTGTTTTAGGTGCAATCTTGGATGTTTGCAAAACTAATAAAGATTTAGATGAAAATGTTA
AAAAGGCAATTCCATGGGCTGTTAGAAAAGTAATTTTCCCATTAGCTCTTGAAAAGAATT
ATAATTGGTTCTCAGAATTTGTTGAAATTAAATAAATTTTTTTAAGAAATCTATTTTTAT
TTTTAAAAAAAAAAXXXXXXXXXXCTGAATCAATTTCAAAAGTGAAAGAAATCCTTCAAA
AATTGACAGCTATGGTTTATAAAAGTTTTTATGATGAAGAAAGAATTATTATACCTGTTG
TTTTAAGTTCAATCCCAAAGAGTAAACAAAATAAATTGGGTGAGAAAATGAATGAAACTA
TGAAAAATGCACCAACTTCTAAATTTGTTTTAGGTGCAATCTTGGATGTTTGCAAAACTA
ATAAAGATTTAGATGAAAATGTTAAAAAGGCAATTCCATGGGCTGTTAGAAAAGTAATTT
TCCCATTAGCTCTTGAAAAGAATTATAATTNGTTCTCAGAATTTGTTAAATTAAATAAAT
TTTTTTAAGAAATC
sequence update 2001. 3.22
Translated Amino Acid sequence 
*infksernpskidsygl*kfl**rknyytccfkfnpke*tk*ig*ene*nyekctnf*i
cfrcnlgclqn**rfr*kc*kgnsmgc*ksnfpiss*kel*lvlric*n*INFFKKSIFI
FKKK---

---ESISKVKEILQKLTAMVYKSFYDEERIIIPVVLSSIPKSKQNKLGEKMNETMKNAPT
SKFVLGAILDVCKTNKDLDENVKKAIPWAVRKVIFPLALEKNYNXFSEFVKLNKFF*ei
Translated Amino Acid sequence (All Frames) 
Frame A:
lnqfqk*kksfkn*qlwfikvfmmkkellyllf*vqsqrvnkinwvrk*mkl*kmhqlln
lf*vqswmfakliki*mkmlkrqfhgllek*fsh*llkriiigsqnllklnkff*eiyfy
f*kk---

---lnqfqk*kksfkn*qlwfikvfmmkkellyllf*vqsqrvnkinwvrk*mkl*kmhq
llnlf*vqswmfakliki*mkmlkrqfhgllek*fsh*llkriiixsqnlln*inffkk

Frame B:
*infksernpskidsygl*kfl**rknyytccfkfnpke*tk*ig*ene*nyekctnf*i
cfrcnlgclqn**rfr*kc*kgnsmgc*ksnfpiss*kel*lvlric*n*INFFKKSIFI
FKKK---

---*infksernpskidsygl*kfl**rknyytccfkfnpke*tk*ig*ene*nyekctn
f*icfrcnlgclqn**rfr*kc*kgnsmgc*ksnfpiss*kel*xvlric*ik*iflrn

Frame C:
esiskvkeilqkltamvyksfydeeriiipvvlssipkskqnklgekmnetmknaptskf
vlgaildvcktnkdldenvkkaipwavrkvifplaleknynwfsefveik*iflrnlflf
lkkk---

---ESISKVKEILQKLTAMVYKSFYDEERIIIPVVLSSIPKSKQNKLGEKMNETMKNAPT
SKFVLGAILDVCKTNKDLDENVKKAIPWAVRKVIFPLALEKNYNXFSEFVKLNKFF*ei
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI503 (VSI503Q) /CSM/VS/VSI5-A/VSI503Q.Seq.d/                        680   0.0
SSM642 (SSM642Q) /CSM/SS/SSM6-B/SSM642Q.Seq.d/                        636   0.0
VSG781 (VSG781Q) /CSM/VS/VSG7-D/VSG781Q.Seq.d/                        529   e-149
VSD872 (VSD872Q) /CSM/VS/VSD8-C/VSD872Q.Seq.d/                        440   e-122
VSF733 (VSF733Q) /CSM/VS/VSF7-B/VSF733Q.Seq.d/                        422   e-117
SSF510 (SSF510Q) /CSM/SS/SSF5-A/SSF510Q.Seq.d/                         40   0.047
FC-AX18 (FC-AX18Q) /CSM/FC/FC-AX/FC-AX18Q.Seq.d/                       40   0.047
VFI778 (VFI778Q) /CSM/VF/VFI7-D/VFI778Q.Seq.d/                         38   0.18
SFL355 (SFL355Q) /CSM/SF/SFL3-C/SFL355Q.Seq.d/                         38   0.18
VHN735 (VHN735Q) /CSM/VH/VHN7-B/VHN735Q.Seq.d/                         36   0.73
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268794) Dictyostelium discoideum vegetative cDNA clone:VS...   658   0.0    1
(AU268793) Dictyostelium discoideum vegetative cDNA clone:VS...   642   e-180  1
(C93337) Dictyostelium discoideum slug cDNA, clone SSM642.        642   e-180  1
(AU266808) Dictyostelium discoideum vegetative cDNA clone:VS...   527   e-145  1
(AU264690) Dictyostelium discoideum vegetative cDNA clone:VS...   440   e-119  1
(AU265700) Dictyostelium discoideum vegetative cDNA clone:VS...   422   e-114  1
(AE017245) Mycoplasma synoviae 53, complete genome.                36   0.004  15
(AC205238) Spermophilus tridecemlineatus clone VMRC20-665L22...    34   0.054  7
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    36   0.13   14
(AC168187) Atelerix albiventris clone LB4-121A3, WORKING DRA...    36   0.14   6
dna update 2009. 7.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001098_549(CP001098|pid:none) Halothermothrix orenii H 168, co...    37   0.45
AE014819_38(AE014819|pid:none) Plasmodium falciparum 3D7 chromos...    34   5.0
AM180355_1225(AM180355|pid:none) Clostridium difficile 630 compl...    33   6.6
protein update 2009. 3.24
PSORT 

 psg: 0.63  gvh: 0.41  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VSI503 is cyt
5' end seq. ID VSI503F
5' end seq. 
>VSI503F.Seq
CTGAATCAATTTCAAAAGTGAAAGAAATCCTTCAAAAATTGACAGCTATGGTTTATAAAA
GTTTTTATGATGAAGAAAGAATTATTATACCTGTTGTTTTAAGTTCAATCCCAAAGAGTA
AACAAAATAAATTGGGTGAGAAAATGAATGAAACTATGAAAAATGCACCAACTTCTAAAT
TTGTTTTAGGTGCAATCTTGGATGTTTGCAAAACTAATAAAGATTTAGATGAAAATGTTA
AAAAGGCAATTCCATGGGCTGTTAGAAAAGTAATTTTCCCATTAGCTCTTGAAAAGAATT
ATAATTGGTTCTCAGAATTTGTTGAAATTAAATAAATTTTTTTAAGAAATCTATTTTTAT
TTTTAAAAAAAAAA----------
Length of 5' end seq. 374
3' end seq. ID VSI503Z
3' end seq. 
>VSI503Z.Seq
----------CTGAATCAATTTCAAAAGTGAAAGAAATCCTTCAAAAATTGACAGCTATG
GTTTATAAAAGTTTTTATGATGAAGAAAGAATTATTATACCTGTTGTTTTAAGTTCAATC
CCAAAGAGTAAACAAAATAAATTGGGTGAGAAAATGAATGAAACTATGAAAAATGCACCA
ACTTCTAAATTTGTTTTAGGTGCAATCTTGGATGTTTGCAAAACTAATAAAGATTTAGAT
GAAAATGTTAAAAAGGCAATTCCATGGGCTGTTAGAAAAGTAATTTTCCCATTAGCTCTT
GAAAAGAATTATAATTNGTTCTCAGAATTTGTTAAATTAAATAAATTTTTTTAAGAAATC
Length of 3' end seq. 350
Connected seq. ID VSI503P
Connected seq. 
>VSI503P.Seq
CTGAATCAATTTCAAAAGTGAAAGAAATCCTTCAAAAATTGACAGCTATGGTTTATAAAA
GTTTTTATGATGAAGAAAGAATTATTATACCTGTTGTTTTAAGTTCAATCCCAAAGAGTA
AACAAAATAAATTGGGTGAGAAAATGAATGAAACTATGAAAAATGCACCAACTTCTAAAT
TTGTTTTAGGTGCAATCTTGGATGTTTGCAAAACTAATAAAGATTTAGATGAAAATGTTA
AAAAGGCAATTCCATGGGCTGTTAGAAAAGTAATTTTCCCATTAGCTCTTGAAAAGAATT
ATAATTGGTTCTCAGAATTTGTTGAAATTAAATAAATTTTTTTAAGAAATCTATTTTTAT
TTTTAAAAAAAAAA----------CTGAATCAATTTCAAAAGTGAAAGAAATCCTTCAAA
AATTGACAGCTATGGTTTATAAAAGTTTTTATGATGAAGAAAGAATTATTATACCTGTTG
TTTTAAGTTCAATCCCAAAGAGTAAACAAAATAAATTGGGTGAGAAAATGAATGAAACTA
TGAAAAATGCACCAACTTCTAAATTTGTTTTAGGTGCAATCTTGGATGTTTGCAAAACTA
ATAAAGATTTAGATGAAAATGTTAAAAAGGCAATTCCATGGGCTGTTAGAAAAGTAATTT
TCCCATTAGCTCTTGAAAAGAATTATAATTNGTTCTCAGAATTTGTTAAATTAAATAAAT
TTTTTTAAGAAATC
Length of connected seq. 724
Full length Seq ID -
Full length Seq. -
Length of full length seq. -