VSI379
Library VS
(Link to library)
Clone ID VSI379
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15079-1
Original site URL
Representative seq. ID VSI379P
(Link to Original site)
Representative DNA sequence
>VSI379 (VSI379Q) /CSM/VS/VSI3-D/VSI379Q.Seq.d/
CAAATACACAATGGCCATCGATAAATCCAAAAGATTCTTAAGAAAGACCGGTAGAAAGAC
TTTAGTCTCTCAAAATCCATACCATGCACTCTTAGTCAAATTATACCGTTTCTTAGCCCG
TAGAACCAACTCCAAGTTCAACAAGGTTGTCTTAAAGAGATTATTACAAACTAAAACCAA
TAGACCACCAGTTTCAATCTCAAGAATTGCCAATTTAATGAAGGACAGAAAGAGCGGTAA
GATTGCTGTTTGTGTTGGTACCGTTGTTGATGATGAAAGATTATTAGACTGCCCAAAACT
CACTGTTTGTGCATTAAGATTCACTGAAACTGCTCGTTCAAGAATCGTCAAAGCTGGTGG
TAAAGCATTATCTTTCGATCAATTCGCTTTAGTTAGACCAAGAGGTAACAACACTTTCTT
AATCAAAGGTGTTACCAAAGCTAGAGAAGTCTACAAACATTTCGGTAGAGCTCCAGGTTT
ACCAGGTTCCCATGCTCGTCCTTATGTCCGTTCAGAAGGTATTAAATTCCAAAGATCAAA
GACCAGAAATCCATAAAGGCAAAAAGAAAATAAAGTCGCCCATTAAAAACAAAAAAAAAA
XXXXXXXXXXACCAGTTTCAATCTCAAGAATTGCCAATTTAATGAAGGACAGAAAAGAGC
GGTAAGATTGCTGTTTGTGTTGGTACCGTTGTTGATGATGAAAGATTATTAGACTGCCCA
ATACTCACTGTTTGTGCATTAAGATTCACTGAAACTGCTCGTTCAACCNTCGTCAAAGCT
GGTGGTAAAGCATTATCTTTCGATCAATTCGCTTTAGTTAGACCAAGAGGTAACAACACT
TTCTTAATCAAAGGTGTTACCAAAGCTAGAGAAGTCTACAAACATTTCGGTAGAGCTCCA
GGTTTACCAGGTTCCCANGCTCGTCCTTATGTCCGTTCAGAAGGTATTAAATTCCAAAGA
CAAAGACCAGAAANCCNAAAAGGCAAAAAGAAAAAAAGTCGCCC
sequence update 2001. 3.22
Translated Amino Acid sequence
ntqwpsinpkds*erpverl*slkihtmhs*snytvs*pveptpsstrls*rdyyklkpi
dhqfqsqelpi**rteravrllfvlvpllmmkdy*taqnslfvh*dslkllvqessklvv
khylsinsl*ldqevttls*SKVLPKLEKSTNISVELQVYQVPMLVLMSVQKVLNSKDQR
PEIHKGKKKIKSPIKNKKK---

---TSFNLKNCQFNEGQKRAVRLLFVLVPLLMMKDY*taqyslfvh*dslkllvqpsskl
vvkhylsinsl*ldqevttls*skvlpklekstnisvelqvyqvpxlvlmsvqkvlnskd
kdqkxxkakrkkva


Translated Amino Acid sequence (All Frames)
Frame A:
qihnghr*iqkilkkdr*kdfslsksipctlsqiipflsp*nqlqvqqgclkeiitn*nq
*ttsfnlkncqfnegqker*dcclcwyrc***kiirlpkthclcikih*ncsfknrqsww
*siifrsirfs*tkr*qhflnqrcyqs*rslqtfr*ssrftrfpcsslcpfrry*ipkik
dqksikakrk*srplktkkk---

---TSFNLKNCQFNEGQKRAVRLLFVLVPLLMMKDY*taqyslfvh*dslkllvqpsskl
vvkhylsinsl*ldqevttls*skvlpklekstnisvelqvyqvpxlvlmsvqkvlnskd
kdqkxxkakrkkva

Frame B:
kytmaidkskrflrktgrktlvsqnpyhallvklyrflarrtnskfnkvvlkrllqtktn
rppvsisrianlmkdrksgkiavcvgtvvdderlldcpkltvcalrftetarsrivkagg
kalsfdqfalvrprgnntflikgvtkarevykhfgrapglpgsharpyvrsegikfqrsk
trnp*rqkenkvah*kqkk---

---pvsisrianlmkdrker*dcclcwyrc***kiirlpnthclcikih*ncsfnxrqsw
w*siifrsirfs*tkr*qhflnqrcyqs*rslqtfr*ssrftrfpxsslcpfrry*ipkt
ktrxpkrqkekksp

Frame C:
ntqwpsinpkds*erpverl*slkihtmhs*snytvs*pveptpsstrls*rdyyklkpi
dhqfqsqelpi**rteravrllfvlvpllmmkdy*taqnslfvh*dslkllvqessklvv
khylsinsl*ldqevttls*SKVLPKLEKSTNISVELQVYQVPMLVLMSVQKVLNSKDQR
PEIHKGKKKIKSPIKNKKK---

---qfqsqelpi**rteksgkiavcvgtvvdderlldcpiltvcalrftetarstxvkag
gkalsfdqfalvrprgnntflikgvtkarevykhfgrapglpgsxarpyvrsegikfqrq
rpexxkgkkkksr

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ710 (VSJ710Q) /CSM/VS/VSJ7-A/VSJ710Q.Seq.d/ 1158 0.0
VSI379 (VSI379Q) /CSM/VS/VSI3-D/VSI379Q.Seq.d/ 1158 0.0
VSE355 (VSE355Q) /CSM/VS/VSE3-C/VSE355Q.Seq.d/ 1158 0.0
VSD895 (VSD895Q) /CSM/VS/VSD8-D/VSD895Q.Seq.d/ 1158 0.0
VSD169 (VSD169Q) /CSM/VS/VSD1-C/VSD169Q.Seq.d/ 1158 0.0
VSC421 (VSC421Q) /CSM/VS/VSC4-A/VSC421Q.Seq.d/ 1158 0.0
VSH755 (VSH755Q) /CSM/VS/VSH7-C/VSH755Q.Seq.d/ 1152 0.0
VSD778 (VSD778Q) /CSM/VS/VSD7-D/VSD778Q.Seq.d/ 1144 0.0
VSD156 (VSD156Q) /CSM/VS/VSD1-C/VSD156Q.Seq.d/ 1144 0.0
VSG426 (VSG426Q) /CSM/VS/VSG4-B/VSG426Q.Seq.d/ 1140 0.0

own update 2001.11.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU270352) Dictyostelium discoideum vegetative cDNA clone:VS... 1049 0.0 1
(AU268604) Dictyostelium discoideum vegetative cDNA clone:VS... 1049 0.0 1
(AU267922) Dictyostelium discoideum vegetative cDNA clone:VS... 1049 0.0 1
(AU264710) Dictyostelium discoideum vegetative cDNA clone:VS... 1049 0.0 1
(AU264559) Dictyostelium discoideum vegetative cDNA clone:VS... 1049 0.0 1
(AU263567) Dictyostelium discoideum vegetative cDNA clone:VS... 1049 0.0 1
(AU263045) Dictyostelium discoideum vegetative cDNA clone:VS... 1049 0.0 1
(AU262552) Dictyostelium discoideum vegetative cDNA clone:VS... 1049 0.0 1
(AU265144) Dictyostelium discoideum vegetative cDNA clone:VS... 1037 0.0 1
(AU266461) Dictyostelium discoideum vegetative cDNA clone:VS... 1031 0.0 1
dna update 2009. 7.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54VZ4) RecName: Full=60S ribosomal protein L18; 359 7e-98
AY857431_1(AY857431|pid:none) Suberites domuncula L18 mRNA, comp... 206 1e-51
EU116900_1(EU116900|pid:none) Barentsia elongata putative riboso... 206 1e-51
EU302542_1(EU302542|pid:none) Lineus viridis ribosomal protein r... 204 5e-51
(P35980) RecName: Full=60S ribosomal protein L18; &AK009044_1(A... 203 8e-51
(Q5E973) RecName: Full=60S ribosomal protein L18; &BC104507_1(B... 201 4e-50
CP000589_288(CP000589|pid:none) Ostreococcus lucimarinus CCE9901... 201 4e-50
(P69090) RecName: Full=60S ribosomal protein L18; &(P69091) Rec... 200 7e-50
BC053777_1(BC053777|pid:none) Xenopus laevis major, mRNA (cDNA c... 199 9e-50
BC082960_1(BC082960|pid:none) Xenopus tropicalis ribosomal prote... 199 9e-50
protein update 2009. 3.24
PSORT

psg: 0.73 gvh: 0.48 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.17 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
44.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for VSI379 is nuc

5' end seq. ID VSI379F
5' end seq.
>VSI379F.Seq
CAAATACACAATGGCCATCGATAAATCCAAAAGATTCTTAAGAAAGACCGGTAGAAAGAC
TTTAGTCTCTCAAAATCCATACCATGCACTCTTAGTCAAATTATACCGTTTCTTAGCCCG
TAGAACCAACTCCAAGTTCAACAAGGTTGTCTTAAAGAGATTATTACAAACTAAAACCAA
TAGACCACCAGTTTCAATCTCAAGAATTGCCAATTTAATGAAGGACAGAAAGAGCGGTAA
GATTGCTGTTTGTGTTGGTACCGTTGTTGATGATGAAAGATTATTAGACTGCCCAAAACT
CACTGTTTGTGCATTAAGATTCACTGAAACTGCTCGTTCAAGAATCGTCAAAGCTGGTGG
TAAAGCATTATCTTTCGATCAATTCGCTTTAGTTAGACCAAGAGGTAACAACACTTTCTT
AATCAAAGGTGTTACCAAAGCTAGAGAAGTCTACAAACATTTCGGTAGAGCTCCAGGTTT
ACCAGGTTCCCATGCTCGTCCTTATGTCCGTTCAGAAGGTATTAAATTCCAAAGATCAAA
GACCAGAAATCCATAAAGGCAAAAAGAAAATAAAGTCGCCCATTAAAAACAAAAAAAAAA
----------
Length of 5' end seq. 600
3' end seq. ID VSI379Z
3' end seq.
>VSI379Z.Seq
----------ACCAGTTTCAATCTCAAGAATTGCCAATTTAATGAAGGACAGAAAAGAGC
GGTAAGATTGCTGTTTGTGTTGGTACCGTTGTTGATGATGAAAGATTATTAGACTGCCCA
ATACTCACTGTTTGTGCATTAAGATTCACTGAAACTGCTCGTTCAACCNTCGTCAAAGCT
GGTGGTAAAGCATTATCTTTCGATCAATTCGCTTTAGTTAGACCAAGAGGTAACAACACT
TTCTTAATCAAAGGTGTTACCAAAGCTAGAGAAGTCTACAAACATTTCGGTAGAGCTCCA
GGTTTACCAGGTTCCCANGCTCGTCCTTATGTCCGTTCAGAAGGTATTAAATTCCAAAGA
CAAAGACCAGAAANCCNAAAAGGCAAAAAGAAAAAAAGTCGCCC
Length of 3' end seq. 394
Connected seq. ID VSI379P
Connected seq.
>VSI379P.Seq
CAAATACACAATGGCCATCGATAAATCCAAAAGATTCTTAAGAAAGACCGGTAGAAAGAC
TTTAGTCTCTCAAAATCCATACCATGCACTCTTAGTCAAATTATACCGTTTCTTAGCCCG
TAGAACCAACTCCAAGTTCAACAAGGTTGTCTTAAAGAGATTATTACAAACTAAAACCAA
TAGACCACCAGTTTCAATCTCAAGAATTGCCAATTTAATGAAGGACAGAAAGAGCGGTAA
GATTGCTGTTTGTGTTGGTACCGTTGTTGATGATGAAAGATTATTAGACTGCCCAAAACT
CACTGTTTGTGCATTAAGATTCACTGAAACTGCTCGTTCAAGAATCGTCAAAGCTGGTGG
TAAAGCATTATCTTTCGATCAATTCGCTTTAGTTAGACCAAGAGGTAACAACACTTTCTT
AATCAAAGGTGTTACCAAAGCTAGAGAAGTCTACAAACATTTCGGTAGAGCTCCAGGTTT
ACCAGGTTCCCATGCTCGTCCTTATGTCCGTTCAGAAGGTATTAAATTCCAAAGATCAAA
GACCAGAAATCCATAAAGGCAAAAAGAAAATAAAGTCGCCCATTAAAAACAAAAAAAAAA
----------ACCAGTTTCAATCTCAAGAATTGCCAATTTAATGAAGGACAGAAAAGAGC
GGTAAGATTGCTGTTTGTGTTGGTACCGTTGTTGATGATGAAAGATTATTAGACTGCCCA
ATACTCACTGTTTGTGCATTAAGATTCACTGAAACTGCTCGTTCAACCNTCGTCAAAGCT
GGTGGTAAAGCATTATCTTTCGATCAATTCGCTTTAGTTAGACCAAGAGGTAACAACACT
TTCTTAATCAAAGGTGTTACCAAAGCTAGAGAAGTCTACAAACATTTCGGTAGAGCTCCA
GGTTTACCAGGTTCCCANGCTCGTCCTTATGTCCGTTCAGAAGGTATTAAATTCCAAAGA
CAAAGACCAGAAANCCNAAAAGGCAAAAAGAAAAAAAGTCGCCC
Length of connected seq. 994
Full length Seq ID -
Full length Seq. -
Length of full length seq. -