>VSI320 (VSI320Q) /CSM/VS/VSI3-A/VSI320Q.Seq.d/
AAAAACAATAATACCTTTATTTATTTAAATAAAAAAAAAAAAACTTCAATTTTNGTTATA
TTTNAATATATATATATATTNCTTTTTTCTTTTTTTTTTTTTAAAAAAAAAAXXXXXXXX
XX

KNNNTFIYLNKKKKTSIXVIFXYIYIXLFSFFFFKKK---

Frame A:
KNNNTFIYLNKKKKTSIXVIFXYIYIXLFSFFFFKKK---


Frame B:
ktiiplfi*ikkkklqfxlyxniyiyxfflffflkk---


Frame C:
kq*ylylfk*kkknfnfxyixiyiyixffffff*kk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI320 (VSI320Q) /CSM/VS/VSI3-A/VSI320Q.Seq.d/                         62   2e-09
SSI706 (SSI706Q) /CSM/SS/SSI7-A/SSI706Q.Seq.d/                         62   2e-09
SSL146 (SSL146Q) /CSM/SS/SSL1-B/SSL146Q.Seq.d/                         40   0.007
SSK336 (SSK336Q) /CSM/SS/SSK3-B/SSK336Q.Seq.d/                         40   0.007
SSK134 (SSK134Q) /CSM/SS/SSK1-B/SSK134Q.Seq.d/                         40   0.007
SSH317 (SSH317Q) /CSM/SS/SSH3-A/SSH317Q.Seq.d/                         40   0.007
SSD281 (SSD281Q) /CSM/SS/SSD2-D/SSD281Q.Seq.d/                         40   0.007
VSG833 (VSG833Q) /CSM/VS/VSG8-B/VSG833Q.Seq.d/                         38   0.027
VFM710 (VFM710Q) /CSM/VF/VFM7-A/VFM710Q.Seq.d/                         38   0.027
VFE741 (VFE741Q) /CSM/VF/VFE7-B/VFE741Q.Seq.d/                         38   0.027

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268504) Dictyostelium discoideum vegetative cDNA clone:VS...    62   2e-18  2
(AU073906) Dictyostelium discoideum slug cDNA, clone SSI706.       62   3e-18  2
(CU681840) Zebrafish DNA sequence from clone CH73-285P12 in ...    36   0.003  2
(FI242080) CccaBb006-G7JR CccABb Cajanus cajan genomic clone...    42   0.004  2
(FG087126) CMRC-FF-IH0-acg-g-21-0-CMRC.r1 Ceratitis capitata...    44   0.024  2
(AC027141) Homo sapiens chromosome 18, clone RP11-29E21, com...    36   0.044  2
(AC100794) Homo sapiens chromosome 18, clone CTD-2559F21, co...    36   0.044  2
(CU469504) Zebrafish DNA sequence from clone DKEY-285C2 in l...    36   0.044  2
(CU693366) Zebrafish DNA sequence from clone CH1073-209E23.        40   0.047  2
(CJ452858) Macaca fascicularis mRNA, clone: QflA-18533, 5' e...    36   0.055  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 36,762,335

 psg: 0.56  gvh: 0.37  alm: 0.28  top: 0.33  tms: 0.07  mit: 0.38  mip: 0.00
 nuc: 0.16  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.29  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: plasma membrane

>> prediction for VSI320 is mit

>VSI320F.Seq
AAAAACAATAATACCTTTATTTATTTAAATAAAAAAAAAAAAACTTCAATTTTNGTTATA
TTTNAATATATATATATATTNCTTTTTTCTTTTTTTTTTTTTAAAAAAAAAA--------
--