VSI254
Library VS
(Link to library)
Clone ID VSI254
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U06506-1
Original site URL
Representative seq. ID VSI254E
(Link to Original site)
Representative DNA sequence
>VSI254 (VSI254Q) /CSM/VS/VSI2-C/VSI254Q.Seq.d/
AAATATTTATATATAACAATATAAAATGTCTAGTGTAGGATCAGGTTATGATTTATATGT
ATCAACATATTCACCAGATGGTAAATTATTTCAAGTAGATTATGCAAATAAAGCCGTTGA
AAATAGTGGTACACTCGTCGCAATTAAAGCAAAAGATGGTGTTGTTTTAGGTGTTGAGAA
ATTAGTCCCATCAAAAATGTTATGTTCAGGTTCAAATCGTAGAGTTCATCATATTGACAC
TCATGTTGGTGTTGCAATTGCAGGATTTTTAGCAGATGCAAGACAATTGATTACACGTGC
TAGAAGTGAAGCAAAAAATTATAAATCAACCTATGGTCAACCAATTCCAATTAAAGTATT
ATCACAAAGAATTGCATCATACAATCATATGCATACATTATATGGTAGTGTTAGACCATT
TGGTTGTTCAATTGCAATCACTGGTATTGATCAATATGGTCCACAACTCTTTTTAGTTGA
ACCATCTGGTTCTTGTGTTGGTTATTTCGGTGCTTCACTTGGTAAAGGTAAACAAGCTGC
AAAGAATGAATTAGAAAAGATTAAATTTTCAGAAATGACTTGGTCGTGAAGCAATTAAAG
AAGTTTCAAGAATTATTTACTCTGTTCATGATGAAGTTAAAGATAAAGATTTTGAATTAG
AATTAGGTTGGATTTCAACAGAAACAAACAATGTTCACCAAATCGTTCCAAAAGAATTAC
ACGATGAAGCTGAAGCTTATGCTAAACATCTTAGAAGATGCCAATA
sequence update 2001. 3.25
Translated Amino Acid sequence
niyi*QYKMSSVGSGYDLYVSTYSPDGKLFQVDYANKAVENSGTLVAIKAKDGVVLGVEK
LVPSKMLCSGSNRRVHHIDTHVGVAIAGFLADARQLITRARSEAKNYKSTYGQPIPIKVL
SQRIASYNHMHTLYGSVRPFGCSIAITGIDQYGPQLFLVEPSGSCVGYFGASLGKGKQAA
KNELEKIKFSEMTWS*sn*rsfknyllcs**s*r*rf*irirldfnrnkqcspnrskrit
r*s*slc*ts*kmpi


Translated Amino Acid sequence (All Frames)
Frame A:
kylyiti*nv*crirl*ficiniftrw*iissrlck*sr*k*wytrrn*skrwccfrc*e
ispiknvmfrfks*sssy*hscwccncrifsrcktidytc*k*skkl*inlwstnsn*si
itknciiqsyayiiw*c*tiwlfncnhwy*siwsttlfs*tiwflcwlfrcftw*r*tsc
ke*irkd*ifrndlvvkqlkkfqelftlfmmklkikiln*n*vgfqqkqtmftksfqkny
tmklklmlniledan


Frame B:
niyi*QYKMSSVGSGYDLYVSTYSPDGKLFQVDYANKAVENSGTLVAIKAKDGVVLGVEK
LVPSKMLCSGSNRRVHHIDTHVGVAIAGFLADARQLITRARSEAKNYKSTYGQPIPIKVL
SQRIASYNHMHTLYGSVRPFGCSIAITGIDQYGPQLFLVEPSGSCVGYFGASLGKGKQAA
KNELEKIKFSEMTWS*sn*rsfknyllcs**s*r*rf*irirldfnrnkqcspnrskrit
r*s*slc*ts*kmpi


Frame C:
ifiynnikclv*dqvmiymyqhihqmvnyfk*imqikplkivvhssqlkqkmvlf*vlrn
*shqkcyvqvqivefiiltlmlvlqlqdf*qmqdn*lhvlevkqkiinqpmvnqfqlkyy
hkelhhtiicihymvvldhlvvqlqslvlinmvhnsf*lnhlvlvlvisvlhlvkvnklq
rmn*krlnfqk*lgreaikevsriiysvhdevkdkdfelelgwistetnnvhqivpkelh
deaeayakhlrrcq


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSI254 (VSI254Q) /CSM/VS/VSI2-C/VSI254Q.Seq.d/ 1518 0.0
VSD162 (VSD162Q) /CSM/VS/VSD1-C/VSD162Q.Seq.d/ 983 0.0
VSD562 (VSD562Q) /CSM/VS/VSD5-C/VSD562Q.Seq.d/ 515 e-145
VSH450 (VSH450Q) /CSM/VS/VSH4-C/VSH450Q.Seq.d/ 48 2e-04
VFJ709 (VFJ709Q) /CSM/VF/VFJ7-A/VFJ709Q.Seq.d/ 38 0.19
VFI306 (VFI306Q) /CSM/VF/VFI3-A/VFI306Q.Seq.d/ 38 0.19
VFB422 (VFB422Q) /CSM/VF/VFB4-A/VFB422Q.Seq.d/ 38 0.19
VFA481 (VFA481Q) /CSM/VF/VFA4-D/VFA481Q.Seq.d/ 38 0.19
VFA406 (VFA406Q) /CSM/VF/VFA4-A/VFA406Q.Seq.d/ 38 0.19
SFG154 (SFG154Q) /CSM/SF/SFG1-C/SFG154Q.Seq.d/ 38 0.19

own update 2002. 7.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU268399) Dictyostelium discoideum vegetative cDNA clone:VS... 1181 0.0 1
(U61988) Dictyostelium discoideum PrtD (prtD) mRNA, complete... 1130 0.0 3
(AU268400) Dictyostelium discoideum vegetative cDNA clone:VS... 844 0.0 2
(AU263576) Dictyostelium discoideum vegetative cDNA clone:VS... 983 0.0 1
(AU264246) Dictyostelium discoideum vegetative cDNA clone:VS... 515 e-142 1
(EC825581) SME00002373 esmbsro2 Sawyeria marylandensis cDNA,... 78 5e-21 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 72 6e-17 2
(DY451059) PCAA-aaa43f06.g2 UCI-12 Podocoryna carnea cDNA 5'... 66 1e-12 3
(DY452563) PCAA-aaa30c07.g1 UCI-12 Podocoryna carnea cDNA 5'... 66 1e-12 3
(EC821344) SME00006756 esmbsro2 Sawyeria marylandensis cDNA,... 86 2e-12 1
dna update 2009. 7. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U61988_1(U61988|pid:none) Dictyostelium discoideum PrtD (prtD) m... 367 e-126
BT051697_1(BT051697|pid:none) Medicago truncatula clone MTYF5_F6... 245 8e-78
EU975033_1(EU975033|pid:none) Zea mays clone 465494 proteasome s... 246 1e-77
AJ291738_1(AJ291738|pid:none) Nicotiana tabacum mRNA for putativ... 248 1e-77
AC129718_6(AC129718|pid:none) Oryza sativa (japonica cultivar-gr... 244 2e-77
EF148113_1(EF148113|pid:none) Populus trichocarpa clone WS0127_L... 250 4e-77
DQ995513_2(DQ995513|pid:none) Hordeum vulgare clone 604d05_c-69 ... 245 5e-77
(Q9LSU0) RecName: Full=Proteasome subunit alpha type-3; ... 244 2e-76
AM439232_1(AM439232|pid:none) Vitis vinifera contig VV78X220686.... 243 2e-76
Y13693_1(Y13693|pid:none) Arabidopsis thaliana mRNA for proteaso... 244 4e-76
protein update 2009. 3.24
PSORT

psg: 0.85 gvh: 0.40 alm: 0.40 top: 0.33 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: vesicles of secretory system
8.0 %: endoplasmic reticulum
4.0 %: cytoskeletal

>> prediction for VSI254 is cyt

5' end seq. ID VSI254F
5' end seq.
>VSI254F.Seq
AAATATTTATATATAACAATATAAAATGTCTAGTGTAGGATCAGGTTATGATTTATATGT
ATCAACATATTCACCAGATGGTAAATTATTTCAAGTAGATTATGCAAATAAAGCCGTTGA
AAATAGTGGTACACTCGTCGCAATTAAAGCAAAAGATGGTGTTGTTTTAGGTGTTGAGAA
ATTAGTCCCATCAAAAATGTTATGTTCAGGTTCAAATCGTAGAGTTCATCATATTGACAC
TCATGTTGGTGTTGCAATTGCAGGATTTTTAGCAGATGCAAGACAATTGATTACACGTGC
TAGAAGTGAAGCAAAAAATTATAAATCAACCTATGGTCAACCAATTCCAATTAAAGTATT
ATCACAAAGAATTGCATCATACAATCATATGCATACATTATATGGTAGTGTTAGACCATT
TGGTTGTTCAATTGCAATCACTGGTATTGATCAATATGGTCCACAACTCTTTTTAGTTGA
ACCATCTGGTTCTTGTGTTGGTTATTTCGGTGCTTCACTTGGTAAAGGTAAACAAGCTGC
AAAGAATGAATTAGAAAAGATTAAATTTTCAGAAATGACTTGGTCGTGAAGCAATT----
------
Length of 5' end seq. 596
3' end seq. ID VSI254Z
3' end seq.
>VSI254Z.Seq
----------TGGTGTTGTTTTAGGTGTTGAGAAATTAGTCCCATCAAAAATGTTATGTT
CAGGTTCAAATCGTAGAGTTCATCATATTGACACTCATGTTGGTGTTGCAATTGCAGGAT
TTTTAGCAGATGCAAGACAATTGATTACACGTGCTAGAAGTGAAGCAAAAAATTATAAAT
CAACCTATGGTCAACCAATTCCAATTAAAGTATTATCACAAAGAATTGCATCATACAATC
ATATGCATACATTATATGGTAGTGTTAGACCATTTGGTTGTTCAATTGCAATCACTGGTA
TTGATCAATATGGTCCACAACTCTTTTTAGTTGAACCATCTGGTTCTTGTGTTGGTTATT
TCGGTGCTTCACTTGGTAAAGGTAAACAAGCTGCAAAGAATGAATTAGAAAAGATTAAAT
TTTCAGAAATGACTTGTCGTGAAGCAATTAAAGAAGTTTCAAGAATTATTTACTCTGTTC
ATGATGAAGTTAAAGATAAAGATTTTGAATTAGAATTAGGTTGGATTTCAACAGAAACAA
ACAATGTTCACCAAATCGTTCCAAAAGAATTACACGATGAAGCTGAAGCTTATGCTAAAC
ATCTTAGAAGATGCCAATA
Length of 3' end seq. 609
Connected seq. ID VSI254P
Connected seq.
>VSI254P.Seq
AAATATTTATATATAACAATATAAAATGTCTAGTGTAGGATCAGGTTATGATTTATATGT
ATCAACATATTCACCAGATGGTAAATTATTTCAAGTAGATTATGCAAATAAAGCCGTTGA
AAATAGTGGTACACTCGTCGCAATTAAAGCAAAAGATGGTGTTGTTTTAGGTGTTGAGAA
ATTAGTCCCATCAAAAATGTTATGTTCAGGTTCAAATCGTAGAGTTCATCATATTGACAC
TCATGTTGGTGTTGCAATTGCAGGATTTTTAGCAGATGCAAGACAATTGATTACACGTGC
TAGAAGTGAAGCAAAAAATTATAAATCAACCTATGGTCAACCAATTCCAATTAAAGTATT
ATCACAAAGAATTGCATCATACAATCATATGCATACATTATATGGTAGTGTTAGACCATT
TGGTTGTTCAATTGCAATCACTGGTATTGATCAATATGGTCCACAACTCTTTTTAGTTGA
ACCATCTGGTTCTTGTGTTGGTTATTTCGGTGCTTCACTTGGTAAAGGTAAACAAGCTGC
AAAGAATGAATTAGAAAAGATTAAATTTTCAGAAATGACTTGGTCGTGAAGCAATT----
------TGGTGTTGTTTTAGGTGTTGAGAAATTAGTCCCATCAAAAATGTTATGTTCAGG
TTCAAATCGTAGAGTTCATCATATTGACACTCATGTTGGTGTTGCAATTGCAGGATTTTT
AGCAGATGCAAGACAATTGATTACACGTGCTAGAAGTGAAGCAAAAAATTATAAATCAAC
CTATGGTCAACCAATTCCAATTAAAGTATTATCACAAAGAATTGCATCATACAATCATAT
GCATACATTATATGGTAGTGTTAGACCATTTGGTTGTTCAATTGCAATCACTGGTATTGA
TCAATATGGTCCACAACTCTTTTTAGTTGAACCATCTGGTTCTTGTGTTGGTTATTTCGG
TGCTTCACTTGGTAAAGGTAAACAAGCTGCAAAGAATGAATTAGAAAAGATTAAATTTTC
AGAAATGACTTGTCGTGAAGCAATTAAAGAAGTTTCAAGAATTATTTACTCTGTTCATGA
TGAAGTTAAAGATAAAGATTTTGAATTAGAATTAGGTTGGATTTCAACAGAAACAAACAA
TGTTCACCAAATCGTTCCAAAAGAATTACACGATGAAGCTGAAGCTTATGCTAAACATCT
TAGAAGATGCCAATA
Length of connected seq. 1205
Full length Seq ID VSI254E
Full length Seq.
>VSI254E.Seq
AAATATTTATATATAACAATATAAAATGTCTAGTGTAGGATCAGGTTATGATTTATATGT
ATCAACATATTCACCAGATGGTAAATTATTTCAAGTAGATTATGCAAATAAAGCCGTTGA
AAATAGTGGTACACTCGTCGCAATTAAAGCAAAAGATGGTGTTGTTTTAGGTGTTGAGAA
ATTAGTCCCATCAAAAATGTTATGTTCAGGTTCAAATCGTAGAGTTCATCATATTGACAC
TCATGTTGGTGTTGCAATTGCAGGATTTTTAGCAGATGCAAGACAATTGATTACACGTGC
TAGAAGTGAAGCAAAAAATTATAAATCAACCTATGGTCAACCAATTCCAATTAAAGTATT
ATCACAAAGAATTGCATCATACAATCATATGCATACATTATATGGTAGTGTTAGACCATT
TGGTTGTTCAATTGCAATCACTGGTATTGATCAATATGGTCCACAACTCTTTTTAGTTGA
ACCATCTGGTTCTTGTGTTGGTTATTTCGGTGCTTCACTTGGTAAAGGTAAACAAGCTGC
AAAGAATGAATTAGAAAAGATTAAATTTTCAGAAATGACTTGGTCGTGAAGCAATTAAAG
AAGTTTCAAGAATTATTTACTCTGTTCATGATGAAGTTAAAGATAAAGATTTTGAATTAG
AATTAGGTTGGATTTCAACAGAAACAAACAATGTTCACCAAATCGTTCCAAAAGAATTAC
ACGATGAAGCTGAAGCTTATGCTAAACATCTTAGAAGATGCCAATA
Length of full length seq. 766