AFB845
Library AF
(Link to library)
Clone ID AFB845
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15307-1
Original site URL
Representative seq. ID AFB845P
(Link to Original site)
Representative DNA sequence
>AFB845 (AFB845Q) /CSM/AF/AFB8-B/AFB845Q.Seq.d/
TAAATAATGTCAAACATTGATTTTAAAGCATTAGAAAGAGCAGCAAATGAAACTAGAGGT
TTAAGCATGGATGCAGTTGCCAAAGCTGCCTCTGGTCATTTAGGTTTACCACTTGGTTCT
GCTGAAATTGGNGCTGCATTATTTGGTAATTCATTGATCTATAACCCAAAAGATACAAGA
TGGTTAAATAGAGATTATTTTGTATTAAGTGCAGGTCATGGTTCAATGTTTTTATATAGT
TGGTTACATTTATCAGGATATGATGTTTCAATTGAAGATNTTAAAAATTTCAGACAATTA
AATTCAAAGACACCAGGTCATCCANAATTTCATGACACACCAGGCGTTGAAGCTACCACT
GGTCCATTAGGTCAAGGTATTGCAAATGCCGTTGGTATTGCATCAGCATGTAAAATGGCA
GCAGXXXXXXXXXXCTCTCACATTTACCAGTAGTTTACATTTTCACTCATGACTCTGTTG
GTGTTGGTGAAGATGGTCCAACTCATCAACCAGTTGAAACCGTTTCAGGTCTTCGTATGA
TTCCAAACTTGGATGTCATTCGTCCAGCCGATCCAGAAGAAACAGCTGCTGCTTTCTCTT
TGGCTTATGCTCGTGCCGATGGTCCAACCCTTTTATCATTAACTCGTCAAAATCTTCCAT
TCCTCCCAGGTACCGCTCAAAAGAAGAGAGAAGGTACTCTCAGAGGTGGTTACATTGTCG
TTAGTGAAACCGCTCCATTAAGAATGATCTTAATTGCCACTGGTTCAGAAGTTCAACATT
GTGTTGAAGCCGCTAAATTATTAGGTGATGATATTCGTGTCGTCTCTATGCCATGCACTG
AACTTTTCGATCGTCAATCAAATGAATACAAACAATCCGTACTTCCAAGTGGTTGTAGAA
ATCGTATCGCTATGGAAGCTGGTGTCACTTCATTCTGGTATAAATATGTTGGTCTTGATG
GTAAAGTCATTGGTATTGATAGATTTGGTATGTCTGCACCAGGTAATGCCGTTATNAAAC
AATTAGGTANACTTCTAAAATTTAGTAAACATTTCAAAACAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
*IMSNIDFKALERAANETRGLSMDAVAKAASGHLGLPLGSAEIGAALFGNSLIYNPKDTR
WLNRDYFVLSAGHGSMFLYSWLHLSGYDVSIEDXKNFRQLNSKTPGHPXFHDTPGVEATT
GPLGQGIANAVGIASACKMAA---

---LSHLPVVYIFTHDSVGVGEDGPTHQPVETVSGLRMIPNLDVIRPADPEETAAAFSLA
YARADGPTLLSLTRQNLPFLPGTAQKKREGTLRGGYIVVSETAPLRMILIATGSEVQHCV
EAAKLLGDDIRVVSMPCTELFDRQSNEYKQSVLPSGCRNRIAMEAGVTSFWYKYVGLDGK
VIGIDRFGMSAPGNAVXKQLGXLLKFSKHFKTKK


Translated Amino Acid sequence (All Frames)
Frame A:
*IMSNIDFKALERAANETRGLSMDAVAKAASGHLGLPLGSAEIGAALFGNSLIYNPKDTR
WLNRDYFVLSAGHGSMFLYSWLHLSGYDVSIEDXKNFRQLNSKTPGHPXFHDTPGVEATT
GPLGQGIANAVGIASACKMAA---

---LSHLPVVYIFTHDSVGVGEDGPTHQPVETVSGLRMIPNLDVIRPADPEETAAAFSLA
YARADGPTLLSLTRQNLPFLPGTAQKKREGTLRGGYIVVSETAPLRMILIATGSEVQHCV
EAAKLLGDDIRVVSMPCTELFDRQSNEYKQSVLPSGCRNRIAMEAGVTSFWYKYVGLDGK
VIGIDRFGMSAPGNAVXKQLGXLLKFSKHFKTKK

Frame B:
k*cqtlilkh*keqqmklev*awmqlpklplvi*vyhlvllklxlhylvih*sitqkiqd
g*ieiily*vqvmvqcfyivgyiyqdmmfqlkxlkisdn*iqrhqvixnfmthqalklpl
vh*vkvlqmplvlhqhvkwqq---

---shiyq*ftfslmtllvlvkmvqlinqlkpfqvfv*fqtwmsfvqpiqkkqlllslwl
mlvpmvqpfyh*lvkifhssqvplkrrekvlsevvtlslvkplh*e*s*lplvqkfnivl
kplny*vmifvsslchalnfsivnqmntnnpyfqvvveivslwklvslhsginmlvlmvk
slvlidlvclhqvmplxnn*vxf*nlvniskqk

Frame C:
nnvkh*f*sirkssk*n*rfkhgcscqsclwsfrfttwfc*nwxciiw*fidl*pkrykm
vk*rlfcikcrswfnvfi*lvtfiri*cfn*rx*kfqtikfkdtrssxis*htrr*syhw
sirsryckcrwycism*ngs---

---ltftsslhfhs*lcwcw*rwsnssts*nrfrssydsklgchsssrsrrnsccflfgl
cscrwsnpfiinsskssippryrskeerrysqrwlhcr**nrsikndlnchwfrsstlc*
sr*iir**yscrlyamh*tfrssik*iqtirtskwl*ksyrygswchfilv*icws*w*s
hwy**iwyvctr*cryxtirxtski**tfqnkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFB845 (AFB845Q) /CSM/AF/AFB8-B/AFB845Q.Seq.d/ 2012 0.0
CHQ579 (CHQ579Q) /CSM/CH/CHQ5-D/CHQ579Q.Seq.d/ 1229 0.0
AFJ520 (AFJ520Q) /CSM/AF/AFJ5-A/AFJ520Q.Seq.d/ 1229 0.0
VHN374 (VHN374Q) /CSM/VH/VHN3-D/VHN374Q.Seq.d/ 1227 0.0
CHO123 (CHO123Q) /CSM/CH/CHO1-A/CHO123Q.Seq.d/ 1227 0.0
CHM832 (CHM832Q) /CSM/CH/CHM8-B/CHM832Q.Seq.d/ 1223 0.0
AHI811 (AHI811Q) /CSM/AH/AHI8-A/AHI811Q.Seq.d/ 1223 0.0
AFH190 (AFH190Q) /CSM/AF/AFH1-D/AFH190Q.Seq.d/ 1223 0.0
AFN107 (AFN107Q) /CSM/AF/AFN1-A/AFN107Q.Seq.d/ 1219 0.0
AFF302 (AFF302Q) /CSM/AF/AFF3-A/AFF302Q.Seq.d/ 1219 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 1174 0.0 4
AX601880|AX601880.1 Sequence 66 from Patent WO02092626. 58 4e-13 3
AX594764|AX594764.1 Sequence 418 from Patent EP1258494. 58 4e-13 3
AX033101|AX033101.1 Sequence 1 from Patent DE19903493. 58 4e-13 3
X73224|X73224.1 S.cerevisiae TKL1 gene for transketolase. 58 6e-13 3
M63302|M63302.1 S.cerevisiae transketolase gene, complete cds. 58 7e-13 3
AR193783|AR193783.1 Sequence 35 from patent US 6348328. 64 1e-12 3
AX571019|AX571019.1 Sequence 4229 from Patent WO02077021. 46 1e-12 4
BQ540728|BQ540728.1 PTAM1055 Phaeodactylum tricornutum Uni-Zap XR Phaeodactylum tricornutum cDNA 5', mRNA sequence. 68 1e-11 2
AE006393|AE006393.1 Lactococcus lactis subsp. lactis IL1403 section 155 of 218 of the complete genome. 42 1e-10 5
dna update 2003. 7.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q556J0) RecName: Full=Transketolase; Short=TK; ... 395 e-109
CP001032_3788(CP001032|pid:none) Opitutus terrae PB90-1, complet... 269 1e-70
(A6YB01) RecName: Full=Transketolase; Short=TK; ... 265 3e-69
AM746676_3991(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 265 3e-69
EF216683_1(EF216683|pid:none) Karlodinium micrum transketolase m... 255 2e-66
EF216685_1(EF216685|pid:none) Bigelowiella natans transketolase ... 253 6e-66
AJ821796_1(AJ821796|pid:none) Guillardia theta partial mRNA for ... 251 4e-65
EF216682_1(EF216682|pid:none) Karlodinium micrum transketolase m... 249 1e-64
EF216681_1(EF216681|pid:none) Isochrysis galbana putative plasti... 220 7e-56
CP001339_2861(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 211 3e-53
protein update 2009. 3.27
PSORT

psg: 0.75 gvh: 0.52 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
28.0 %: nuclear
16.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for AFB845 is cyt

5' end seq. ID AFB845F
5' end seq.
>AFB845F.Seq
TAAATAATGTCAAACATTGATTTTAAAGCATTAGAAAGAGCAGCAAATGAAACTAGAGGT
TTAAGCATGGATGCAGTTGCCAAAGCTGCCTCTGGTCATTTAGGTTTACCACTTGGTTCT
GCTGAAATTGGNGCTGCATTATTTGGTAATTCATTGATCTATAACCCAAAAGATACAAGA
TGGTTAAATAGAGATTATTTTGTATTAAGTGCAGGTCATGGTTCAATGTTTTTATATAGT
TGGTTACATTTATCAGGATATGATGTTTCAATTGAAGATNTTAAAAATTTCAGACAATTA
AATTCAAAGACACCAGGTCATCCANAATTTCATGACACACCAGGCGTTGAAGCTACCACT
GGTCCATTAGGTCAAGGTATTGCAAATGCCGTTGGTATTGCATCAGCATGTAAAATGGCA
GCAG----------
Length of 5' end seq. 424
3' end seq. ID AFB845Z
3' end seq.
>AFB845Z.Seq
----------CTCTCACATTTACCAGTAGTTTACATTTTCACTCATGACTCTGTTGGTGT
TGGTGAAGATGGTCCAACTCATCAACCAGTTGAAACCGTTTCAGGTCTTCGTATGATTCC
AAACTTGGATGTCATTCGTCCAGCCGATCCAGAAGAAACAGCTGCTGCTTTCTCTTTGGC
TTATGCTCGTGCCGATGGTCCAACCCTTTTATCATTAACTCGTCAAAATCTTCCATTCCT
CCCAGGTACCGCTCAAAAGAAGAGAGAAGGTACTCTCAGAGGTGGTTACATTGTCGTTAG
TGAAACCGCTCCATTAAGAATGATCTTAATTGCCACTGGTTCAGAAGTTCAACATTGTGT
TGAAGCCGCTAAATTATTAGGTGATGATATTCGTGTCGTCTCTATGCCATGCACTGAACT
TTTCGATCGTCAATCAAATGAATACAAACAATCCGTACTTCCAAGTGGTTGTAGAAATCG
TATCGCTATGGAAGCTGGTGTCACTTCATTCTGGTATAAATATGTTGGTCTTGATGGTAA
AGTCATTGGTATTGATAGATTTGGTATGTCTGCACCAGGTAATGCCGTTATNAAACAATT
AGGTANACTTCTAAAATTTAGTAAACATTTCAAAACAAAAAAA
Length of 3' end seq. 633
Connected seq. ID AFB845P
Connected seq.
>AFB845P.Seq
TAAATAATGTCAAACATTGATTTTAAAGCATTAGAAAGAGCAGCAAATGAAACTAGAGGT
TTAAGCATGGATGCAGTTGCCAAAGCTGCCTCTGGTCATTTAGGTTTACCACTTGGTTCT
GCTGAAATTGGNGCTGCATTATTTGGTAATTCATTGATCTATAACCCAAAAGATACAAGA
TGGTTAAATAGAGATTATTTTGTATTAAGTGCAGGTCATGGTTCAATGTTTTTATATAGT
TGGTTACATTTATCAGGATATGATGTTTCAATTGAAGATNTTAAAAATTTCAGACAATTA
AATTCAAAGACACCAGGTCATCCANAATTTCATGACACACCAGGCGTTGAAGCTACCACT
GGTCCATTAGGTCAAGGTATTGCAAATGCCGTTGGTATTGCATCAGCATGTAAAATGGCA
GCAG----------CTCTCACATTTACCAGTAGTTTACATTTTCACTCATGACTCTGTTG
GTGTTGGTGAAGATGGTCCAACTCATCAACCAGTTGAAACCGTTTCAGGTCTTCGTATGA
TTCCAAACTTGGATGTCATTCGTCCAGCCGATCCAGAAGAAACAGCTGCTGCTTTCTCTT
TGGCTTATGCTCGTGCCGATGGTCCAACCCTTTTATCATTAACTCGTCAAAATCTTCCAT
TCCTCCCAGGTACCGCTCAAAAGAAGAGAGAAGGTACTCTCAGAGGTGGTTACATTGTCG
TTAGTGAAACCGCTCCATTAAGAATGATCTTAATTGCCACTGGTTCAGAAGTTCAACATT
GTGTTGAAGCCGCTAAATTATTAGGTGATGATATTCGTGTCGTCTCTATGCCATGCACTG
AACTTTTCGATCGTCAATCAAATGAATACAAACAATCCGTACTTCCAAGTGGTTGTAGAA
ATCGTATCGCTATGGAAGCTGGTGTCACTTCATTCTGGTATAAATATGTTGGTCTTGATG
GTAAAGTCATTGGTATTGATAGATTTGGTATGTCTGCACCAGGTAATGCCGTTATNAAAC
AATTAGGTANACTTCTAAAATTTAGTAAACATTTCAAAACAAAAAAA
Length of connected seq. 1057
Full length Seq ID -
Full length Seq. -
Length of full length seq. -