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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI214
Library VS
(Link to library)
Clone ID VSI214
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09738-1
Original site URL
Representative seq. ID VSI214Z
(Link to Original site)
Representative DNA sequence 
>VSI214 (VSI214Q) /CSM/VS/VSI2-A/VSI214Q.Seq.d/
XXXXXXXXXXTTGCTGCTGTTCCAGGTTTAGTTGCTGGTATGTTTTTACATTTAAAACCA
TTAAGAAATATGCAAAGTAATAATTGGATTAAAATATTAATGGATGAAATGGAGAATGAG
AGAATGCATCTTTTATCATTTATGGAGCTTACCAAACCAACATTACTTGAAAGAGGTATG
GTAGCAGTTACTCAAGCAATTTATTGGAATTTATTCTTGGTATTTTATGTATTATCACCA
AAGACAGCACATCGTTTCACAGGTTATCTTGAAGAACAAGCAGTAGTTACCTATACTCAT
ATGTTGGAAGATATTGATTCTGGTAAAGTTCCAAATTATAAAGCTCCACAAATCGCCATT
GAATATTGGGGTCTTCCAGAAGACGCAACTTTAAGAGACTTAATCTTGGTAATTAGACAA
GACGAATCCGATCATCGTTTAGTTAACCATGAAATTAGTAATAAGATTGTCCTCAATAAT
AATGAACCNATCATTTTAGAAAATCATTTCCATAAACCNACCNCCATTAATCCAGTTGGT
GAAGAAGAAATTAAAGAACATTCCCAAGANGGTATTAGAAAGAGAAAAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
---AAVPGLVAGMFLHLKPLRNMQSNNWIKILMDEMENERMHLLSFMELTKPTLLERGMV
AVTQAIYWNLFLVFYVLSPKTAHRFTGYLEEQAVVTYTHMLEDIDSGKVPNYKAPQIAIE
YWGLPEDATLRDLILVIRQDESDHRLVNHEISNKIVLNNNEPIILENHFHKPTXINPVGE
EEIKEHSQXGIRKRKK
Translated Amino Acid sequence (All Frames) 
Frame A:
---cccsrfscwyvftfktikkyak**ld*ning*nge*enasfiiygayqtnit*kryg
ssyssnllefilgilciitkdstsfhrls*rtsssylysyvgry*fw*sskl*sstnrh*
ilgssrrrnfkrlnlgn*trrirssfs*p*n***dcpq***txhfrksfp*txxh*ssw*
rrn*rtfprxy*kekk


Frame B:
---AAVPGLVAGMFLHLKPLRNMQSNNWIKILMDEMENERMHLLSFMELTKPTLLERGMV
AVTQAIYWNLFLVFYVLSPKTAHRFTGYLEEQAVVTYTHMLEDIDSGKVPNYKAPQIAIE
YWGLPEDATLRDLILVIRQDESDHRLVNHEISNKIVLNNNEPIILENHFHKPTXINPVGE
EEIKEHSQXGIRKRKK


Frame C:
---llfqv*llvcfyi*nh*eickviiglky*wmkwrmrecifyhlwslpnqhylkevw*
qllkqfigiyswyfmyyhqrqhivsqvilknkq*lpilicwkililvkfqiiklhkspln
igvfqktql*et*sw*ldktnpiiv*ltmklvirlssiimnxsf*kiisinxppliqlvk
kklknipkxvlerekk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI214 (VSI214Q) /CSM/VS/VSI2-A/VSI214Q.Seq.d/                       1114   0.0
VSB891 (VSB891Q) /CSM/VS/VSB8-D/VSB891Q.Seq.d/                       1082   0.0
VFK566 (VFK566Q) /CSM/VF/VFK5-C/VFK566Q.Seq.d/                       1082   0.0
VFM238 (VFM238Q) /CSM/VF/VFM2-B/VFM238Q.Seq.d/                       1057   0.0
VSK332 (VSK332Q) /CSM/VS/VSK3-B/VSK332Q.Seq.d/                       1055   0.0
VFK229 (VFK229Q) /CSM/VF/VFK2-B/VFK229Q.Seq.d/                       1029   0.0
VSG134 (VSG134Q) /CSM/VS/VSG1-B/VSG134Q.Seq.d/                       1017   0.0
VFC106 (VFC106Q) /CSM/VF/VFC1-A/VFC106Q.Seq.d/                        989   0.0
VFC855 (VFC855Q) /CSM/VF/VFC8-C/VFC855Q.Seq.d/                        971   0.0
VSE238 (VSE238Q) /CSM/VS/VSE2-B/VSE238Q.Seq.d/                        944   0.0
own update 2001.11.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268331) Dictyostelium discoideum vegetative cDNA clone:VS...  1114   0.0    1
(AB046418) Dictyostelium discoideum aoxA mRNA for alternativ...  1082   0.0    1
(AU262323) Dictyostelium discoideum vegetative cDNA clone:VS...  1082   0.0    1
(BJ433647) Dictyostelium discoideum cDNA clone:ddv22c17, 3' ...  1082   0.0    1
(AU266016) Dictyostelium discoideum vegetative cDNA clone:VS...  1059   0.0    1
(BJ434905) Dictyostelium discoideum cDNA clone:ddv25k10, 3' ...   759   0.0    2
(BJ433291) Dictyostelium discoideum cDNA clone:ddv21i08, 3' ...   993   0.0    2
(BJ429858) Dictyostelium discoideum cDNA clone:ddv5k01, 3' e...   684   0.0    3
(BJ430277) Dictyostelium discoideum cDNA clone:ddv6n14, 3' e...   971   0.0    1
(AU262963) Dictyostelium discoideum vegetative cDNA clone:VS...   944   0.0    1
dna update 2009. 7. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB046418_1(AB046418|pid:none) Dictyostelium discoideum aoxA mRNA...   380   e-104
AC144459_1(AC144459|pid:none) Medicago truncatula clone mth2-23o...   183   3e-45
EF084004_1(EF084004|pid:none) Picea sitchensis clone WS0292_B12 ...   182   7e-45
AY524818_1(AY524818|pid:none) Lycopersicon esculentum alternativ...   181   2e-44
(Q8LEE7) RecName: Full=Alternative oxidase 3, mitochondrial;    ...   180   2e-44
(Q40294) RecName: Full=Alternative oxidase, mitochondrial;      ...   179   5e-44
AY034148_1(AY034148|pid:none) Lycopersicon esculentum alternativ...   179   5e-44
AM466432_1(AM466432|pid:none) Vitis vinifera contig VV78X030347....   179   5e-44
S45035(S45035) alternative respiratory pathway oxidase (EC 1.-.-...   179   5e-44
AB008268_4(AB008268|pid:none) Arabidopsis thaliana genomic DNA, ...   179   6e-44
protein update 2009. 3.24
PSORT 

 psg: 0.95  gvh: 0.41  alm: 0.36  top: 0.70  tms: 0.00  mit: 0.25  mip: 0.04
 nuc: 0.08  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for VSI214 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSI214Z
3' end seq. 
>VSI214Z.Seq
----------TTGCTGCTGTTCCAGGTTTAGTTGCTGGTATGTTTTTACATTTAAAACCA
TTAAGAAATATGCAAAGTAATAATTGGATTAAAATATTAATGGATGAAATGGAGAATGAG
AGAATGCATCTTTTATCATTTATGGAGCTTACCAAACCAACATTACTTGAAAGAGGTATG
GTAGCAGTTACTCAAGCAATTTATTGGAATTTATTCTTGGTATTTTATGTATTATCACCA
AAGACAGCACATCGTTTCACAGGTTATCTTGAAGAACAAGCAGTAGTTACCTATACTCAT
ATGTTGGAAGATATTGATTCTGGTAAAGTTCCAAATTATAAAGCTCCACAAATCGCCATT
GAATATTGGGGTCTTCCAGAAGACGCAACTTTAAGAGACTTAATCTTGGTAATTAGACAA
GACGAATCCGATCATCGTTTAGTTAACCATGAAATTAGTAATAAGATTGTCCTCAATAAT
AATGAACCNATCATTTTAGAAAATCATTTCCATAAACCNACCNCCATTAATCCAGTTGGT
GAAGAAGAAATTAAAGAACATTCCCAAGANGGTATTAGAAAGAGAAAAAAAA
Length of 3' end seq. 582
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -