VSI212
Library VS
(Link to library)
Clone ID VSI212
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15350-1
Original site URL
Representative seq. ID VSI212E
(Link to Original site)
Representative DNA sequence
>VSI212 (VSI212Q) /CSM/VS/VSI2-A/VSI212Q.Seq.d/
GCAGAAAAAGAACAAATTAAATTAGTCTTAGTTGGTGATGGTGGTGTTGGTAAAACCACT
TTTGTCCAACGTCATCTTACTGGTGAATTCGAACCAAGATATATCCCAACTCTTGGTGTA
TCAGTCCATCCATTAATCTTCTACACCAATTTCGGTAAAATCCACTTCAATGTATGGGAT
ACCGCTGGTCAAGAAAAATTCGGTGGTTTAAGAGATGGTTATTATATTCAAGGTAATTGT
GCCATTATTATGTTTGATGTCACATCCCGTATTTCATACAAAAATGTTCCAAATTGGCAC
TCTGATTTAACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGTGGTAACAAAGTTGAT
GTTAAAGATCGTAAAGTCAAACCATCCCAAATTGTTTTCCATCGTAGATACAATTTATCA
TACTATGATGTTTCAGCCAAATCAAATTACAATTTCGAAAAACCATTNGTCTGGTTAACA
TCAAAACTCCTCGGTAACAAGGCTGTCACTTCTCGTTCAACAACCAACCTTAAAATTACC
AGAAACCGTTCTCGATTCCAACTTAATGAGTTTATATGAAAAAGAAGTCGCTGATGCTGC
TGCCCTCCCATTACCAGAAGACAATGATGACTTGTAAACAAATTTAAAAAAAAAAAACAA
TAAAAAAAAATAATAATAATAATAATAAAGCCAACAATAAATTTCAATAATCTCAATCCA
CCTAAATGCATAATAAACAAAAACAAAATATATAATATATATATA
sequence update 2001. 3.25
Translated Amino Acid sequence
AEKEQIKLVLVGDGGVGKTTFVQRHLTGEFEPRYIPTLGVSVHPLIFYTNFGKIHFNVWD
TAGQEKFGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHSDLTRVCENIPIVLCGNKVD
VKDRKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPXVWLTSKLLGNKAVTSRSTTNLKIT
RNRSRFQLNEFI*krsr*cccppitrrq**lvnkfkkkkq*kkiiiiiikptinfnnlnp
pkciinknkiyniyi


Translated Amino Acid sequence (All Frames)
Frame A:
AEKEQIKLVLVGDGGVGKTTFVQRHLTGEFEPRYIPTLGVSVHPLIFYTNFGKIHFNVWD
TAGQEKFGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHSDLTRVCENIPIVLCGNKVD
VKDRKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPXVWLTSKLLGNKAVTSRSTTNLKIT
RNRSRFQLNEFI*krsr*cccppitrrq**lvnkfkkkkq*kkiiiiiikptinfnnlnp
pkciinknkiyniyi


Frame B:
qkknkln*s*lvmvvlvkpllsnvillvnsnqdisqllvyqsih*sstpisvkstsmygi
plvkknsvv*emviifkvivpllclmshpvfhtkmfqigtli*pefvktsqsfyvvtklm
lkivksnhpklfsivdtiyhtmmfqpnqitisknhxsg*hqnssvtrlsllvqqptlklp
etvldsnlmslyekevadaaalplpednddl*tnlkkknnkkk******sqq*isiisih
lna**tktkyiiyi


Frame C:
rkrtn*islsw*wwcw*nhfcptssyw*irtkiypnswcispsinllhqfr*nplqcmgy
rwsrkirwfkrwllysr*lchyyv*chipyfiqkcsklal*fnqsl*khpnrfmw*qs*c
*rs*sqtipncfps*iqfiil*cfsqiklqfrktixlvniktpr*qgchfsfnnqp*nyq
kpfsipt**vymkkkslmllpshyqktmmtckqi*kkktikknnnnnnkannkfq*sqst
*mhnkqkqni*yiy


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSI212 (VSI212Q) /CSM/VS/VSI2-A/VSI212Q.Seq.d/ 1273 0.0
VSD229 (VSD229Q) /CSM/VS/VSD2-B/VSD229Q.Seq.d/ 1273 0.0
SSI774 (SSI774Q) /CSM/SS/SSI7-D/SSI774Q.Seq.d/ 1257 0.0
SLA506 (SLA506Q) /CSM/SL/SLA5-A/SLA506Q.Seq.d/ 1257 0.0
AHG822 (AHG822Q) /CSM/AH/AHG8-A/AHG822Q.Seq.d/ 1215 0.0
VSG423 (VSG423Q) /CSM/VS/VSG4-A/VSG423Q.Seq.d/ 1179 0.0
VSG164 (VSG164Q) /CSM/VS/VSG1-C/VSG164Q.Seq.d/ 1156 0.0
VSI638 (VSI638Q) /CSM/VS/VSI6-B/VSI638Q.Seq.d/ 1138 0.0
VSF607 (VSF607Q) /CSM/VS/VSF6-A/VSF607Q.Seq.d/ 1118 0.0
SLH458 (SLH458Q) /CSM/SL/SLH4-C/SLH458Q.Seq.d/ 1110 0.0

own update 2004. 8. 9
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU263687) Dictyostelium discoideum vegetative cDNA clone:VS... 1273 0.0 1
(AU268327) Dictyostelium discoideum vegetative cDNA clone:VS... 1211 0.0 1
(L09720) Dictyostelium discoideum GTP-binding protein (TC4/R... 1005 0.0 2
(AU263688) Dictyostelium discoideum vegetative cDNA clone:VS... 1005 0.0 3
(AU060167) Dictyostelium discoideum slug cDNA, clone SLA506. 1005 0.0 2
(BJ333824) Dictyostelium discoideum cDNA clone:dda44l06, 5' ... 1005 0.0 2
(AU040020) Dictyostelium discoideum slug cDNA, clone SLH458. 898 0.0 2
(AU284794) Dictyostelium discoideum gamete cDNA clone:FC-BL0... 846 0.0 3
(AU266186) Dictyostelium discoideum vegetative cDNA clone:VS... 1017 0.0 1
(BJ367586) Dictyostelium discoideum cDNA clone:ddc43c09, 5' ... 761 0.0 3
dna update 2009. 7. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P33519) RecName: Full=GTP-binding nuclear protein Ran; AltName:... 332 6e-90
(O17915) RecName: Full=GTP-binding nuclear protein ran-1; AltNam... 263 9e-74
EF103373_1(EF103373|pid:none) Haliotis discus discus Ran-1-prov ... 261 1e-73
(P52301) RecName: Full=GTP-binding nuclear protein Ran; AltName:... 261 3e-73
JC1455(JC1455;S20712)GTP-binding protein Ran/TC4 - dog 265 4e-73
BC041293_1(BC041293|pid:none) Xenopus laevis RAN, member RAS onc... 261 4e-73
CR761555_1(CR761555|pid:none) Xenopus tropicalis finished cDNA, ... 261 4e-73
CP000499_469(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 258 4e-73
CR382138_83(CR382138|pid:none) Debaryomyces hansenii strain CBS7... 258 4e-73
(P32836) RecName: Full=GTP-binding nuclear protein GSP2/CNR2; &... 259 6e-73
protein update 2009. 3.24
PSORT

psg: 0.80 gvh: 0.35 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
44.0 %: nuclear
4.0 %: cytoskeletal

>> prediction for VSI212 is cyt

5' end seq. ID VSI212F
5' end seq.
>VSI212F.Seq
GCAGAAAAAGAACAAATTAAATTAGTCTTAGTTGGTGATGGTGGTGTTGGTAAAACCACT
TTTGTCCAACGTCATCTTACTGGTGAATTCGAACCAAGATATATCCCAACTCTTGGTGTA
TCAGTCCATCCATTAATCTTCTACACCAATTTCGGTAAAATCCACTTCAATGTATGGGAT
ACCGCTGGTCAAGAAAAATTCGGTGGTTTAAGAGATGGTTATTATATTCAAGGTAATTGT
GCCATTATTATGTTTGATGTCACATCCCGTATTTCATACAAAAATGTTCCAAATTGGCAC
TCTGATTTAACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGTGGTAACAAAGTTGAT
GTTAAAGATCGTAAAGTCAAACCATCCCAAATTGTTTTCCATCGTAGATACAATTTATCA
TACTATGATGTTTCAGCCAAATCAAATTACAATTTCGAAAAACCATTCGTCTGGTTAACA
TCAAAACTCCTCGGTAACAAGGCTGTCACTTCTCGTTCAACAACCAACCTTAAAATTACC
AGAAACCGTTCTCGATTCCAACTTAATGAGTTTATATGAAAAAGAAGTCGCTGATGCTGC
TGCCCTCCCATTAC----------
Length of 5' end seq. 614
3' end seq. ID VSI212Z
3' end seq.
>VSI212Z.Seq
----------AANATNGTAAAGTCAAACCATCCCAAATTGTTTTCCATNGTANANACAAT
TTATCATACTATGATGTTTCAGCCAAATCAAATTACAATTTNGAAAAACCATTTGTNTGG
TTAACATCAAAACTCCNCGGNAACAAGGCTGTCACTCTCGTTCAACAACCAACCTTAAAA
TTACCAGAAACCGTTCTCGATTCCAACTTAATGAGTTTANATGAAAAANAAGTCGCTGAT
GCTGCTGCCCNCCCNTTACCAGAAGACAATGATGACTTGTAAACAAATTTAAAAAAAAAA
AACAATAAAAAAAAATAATAATAATAATAATAAAGCCAACAATAAATTTCAATAATCTCA
ATCCACCTAAATGCATAATAAACAAAAACAAAATATATAATATATATATA
Length of 3' end seq. 400
Connected seq. ID VSI212P
Connected seq.
>VSI212P.Seq
GCAGAAAAAGAACAAATTAAATTAGTCTTAGTTGGTGATGGTGGTGTTGGTAAAACCACT
TTTGTCCAACGTCATCTTACTGGTGAATTCGAACCAAGATATATCCCAACTCTTGGTGTA
TCAGTCCATCCATTAATCTTCTACACCAATTTCGGTAAAATCCACTTCAATGTATGGGAT
ACCGCTGGTCAAGAAAAATTCGGTGGTTTAAGAGATGGTTATTATATTCAAGGTAATTGT
GCCATTATTATGTTTGATGTCACATCCCGTATTTCATACAAAAATGTTCCAAATTGGCAC
TCTGATTTAACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGTGGTAACAAAGTTGAT
GTTAAAGATCGTAAAGTCAAACCATCCCAAATTGTTTTCCATCGTAGATACAATTTATCA
TACTATGATGTTTCAGCCAAATCAAATTACAATTTCGAAAAACCATTCGTCTGGTTAACA
TCAAAACTCCTCGGTAACAAGGCTGTCACTTCTCGTTCAACAACCAACCTTAAAATTACC
AGAAACCGTTCTCGATTCCAACTTAATGAGTTTATATGAAAAAGAAGTCGCTGATGCTGC
TGCCCTCCCATTAC----------AANATNGTAAAGTCAAACCATCCCAAATTGTTTTCC
ATNGTANANACAATTTATCATACTATGATGTTTCAGCCAAATCAAATTACAATTTNGAAA
AACCATTTGTNTGGTTAACATCAAAACTCCNCGGNAACAAGGCTGTCACTCTCGTTCAAC
AACCAACCTTAAAATTACCAGAAACCGTTCTCGATTCCAACTTAATGAGTTTANATGAAA
AANAAGTCGCTGATGCTGCTGCCCNCCCNTTACCAGAAGACAATGATGACTTGTAAACAA
ATTTAAAAAAAAAAAACAATAAAAAAAAATAATAATAATAATAATAAAGCCAACAATAAA
TTTCAATAATCTCAATCCACCTAAATGCATAATAAACAAAAACAAAATATATAATATATA
TATA
Length of connected seq. 1014
Full length Seq ID VSI212E
Full length Seq.
>VSI212E.Seq
GCAGAAAAAGAACAAATTAAATTAGTCTTAGTTGGTGATGGTGGTGTTGGTAAAACCACT
TTTGTCCAACGTCATCTTACTGGTGAATTCGAACCAAGATATATCCCAACTCTTGGTGTA
TCAGTCCATCCATTAATCTTCTACACCAATTTCGGTAAAATCCACTTCAATGTATGGGAT
ACCGCTGGTCAAGAAAAATTCGGTGGTTTAAGAGATGGTTATTATATTCAAGGTAATTGT
GCCATTATTATGTTTGATGTCACATCCCGTATTTCATACAAAAATGTTCCAAATTGGCAC
TCTGATTTAACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGTGGTAACAAAGTTGAT
GTTAAAGATCGTAAAGTCAAACCATCCCAAATTGTTTTCCATCGTAGATACAATTTATCA
TACTATGATGTTTCAGCCAAATCAAATTACAATTTCGAAAAACCATTNGTCTGGTTAACA
TCAAAACTCCTCGGTAACAAGGCTGTCACTTCTCGTTCAACAACCAACCTTAAAATTACC
AGAAACCGTTCTCGATTCCAACTTAATGAGTTTATATGAAAAAGAAGTCGCTGATGCTGC
TGCCCTCCCATTACCAGAAGACAATGATGACTTGTAAACAAATTTAAAAAAAAAAAACAA
TAAAAAAAAATAATAATAATAATAATAAAGCCAACAATAAATTTCAATAATCTCAATCCA
CCTAAATGCATAATAAACAAAAACAAAATATATAATATATATATA
Length of full length seq. 765