VSI210
Library VS
(Link to library)
Clone ID VSI210
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16414-1
Original site URL
Representative seq. ID VSI210P
(Link to Original site)
Representative DNA sequence
>VSI210 (VSI210Q) /CSM/VS/VSI2-A/VSI210Q.Seq.d/
AAATTTAAAAAATGACCAGAGAAGAAAATGTTTATATGGCTAAATTAGCTGAACAAGCTG
AAAGATATGAAGAAATGGTCGAAGCAATGAAAAAAGTTGCTGAATTAGATGTTGAATTAA
CTGTTGAAGAACGTAATCTTTTATCAGTTGCTTATAAAAATGTTATTGGTGCTCGTCGTG
CCTCATGGAGAATCATCTCATCAATTGAACAAAAAGAAGAATCCAAAGGTAATGAAAACC
ACGTTAAAAAGATCAAAGAATACAAATGTAAAGTCGAAAAGGAACTTACCGACATTTGTA
ATGATATCCTCGAAGTTTTAGAATCTCACTTAATCGTTTCATCAGCCTCTGGTGAATCAA
AAGTTTTCTACTACAAAATGAAAGGTGATTACTTCCGTTATTTAGCTGAATTCGCCACCG
GTAACCCACGTAAAACTTCCGCTGAATCATCATTAATTGCCTACAAAGCTGCCTCTGATA
TCGCTGTCACTGAATTACCACCAACCCACCCAATCCGTTTAGGTCTTGCATTAAACTTTT
CAGTTTTCTACTATGAAATCTTAAACTCCCCAGACAGAGCTTGCAACTTAXXXXXXXXXX
GTTTAGGTCNTGCATTAAACNTTTCAGTTTTNAACTATGANATCNTNANCTCCCCNNNCA
GAGCTNGCGGCNCAGCCNAGGCTGCATTCGATGACGCCANTGCCGAANTAGAAANCCTCT
CTGAAGATTCATACAAAG
sequence update 2001. 3.22
Translated Amino Acid sequence
i*KMTREENVYMAKLAEQAERYEEMVEAMKKVAELDVELTVEERNLLSVAYKNVIGARRA
SWRIISSIEQKEESKGNENHVKKIKEYKCKVEKELTDICNDILEVLESHLIVSSASGESK
VFYYKMKGDYFRYLAEFATGNPRKTSAESSLIAYKAASDIAVTELPPTHPIRLGLALNFS
VFYYEILNSPDRACNL---

---LGXALNXSVXNYXIXXSPXRAXGXAXAAFDDAXAEXEXLSEDSYK


Translated Amino Acid sequence (All Frames)
Frame A:
kfkk*pekkmfiwln*lnklkdmkkwskq*kklln*mln*llknvifyqllikmllvlvv
phgesshqlnkkknpkvmkttlkrskntnvkskrnlptfvmisskf*nlt*sfhqplvnq
kfsttk*kvitsvi*lnsppvthvklplnhh*lptklplislslnyhqptqsv*vlh*tf
qfstmks*tpqtelat---

---v*vxh*tfqfxtmxsxxpxxelaaqprlhsmtpxpx*kxslkihtk

Frame B:
nlkndqrrkclyg*is*ts*ki*rngrsneksc*irc*inc*rt*sfiscl*kcywcssc
lmenhlin*tkrriqr**kpr*kdqriqm*srkgtyrhl**yprsfrislnrfislw*ik
sfllqner*llplfs*irhr*pt*nfr*iiinclqscl*yrch*ittnppnpfrsciklf
sfll*nlklprqslql---

---frscikxfsfxl*xxxlpxqsxrxsxgcir*rxcrxrxpl*rfiq

Frame C:
i*KMTREENVYMAKLAEQAERYEEMVEAMKKVAELDVELTVEERNLLSVAYKNVIGARRA
SWRIISSIEQKEESKGNENHVKKIKEYKCKVEKELTDICNDILEVLESHLIVSSASGESK
VFYYKMKGDYFRYLAEFATGNPRKTSAESSLIAYKAASDIAVTELPPTHPIRLGLALNFS
VFYYEILNSPDRACNL---

---LGXALNXSVXNYXIXXSPXRAXGXAXAAFDDAXAEXEXLSEDSYK

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSI210 (VSI210Q) /CSM/VS/VSI2-A/VSI210Q.Seq.d/ 1308 0.0
VSF236 (VSF236Q) /CSM/VS/VSF2-B/VSF236Q.Seq.d/ 1170 0.0
AFB189 (AFB189Q) /CSM/AF/AFB1-D/AFB189Q.Seq.d/ 1170 0.0
FC-BR02 (FC-BR02Q) /CSM/FC/FC-BR/FC-BR02Q.Seq.d/ 1150 0.0
FC-BR01 (FC-BR01Q) /CSM/FC/FC-BR/FC-BR01Q.Seq.d/ 1150 0.0
FC-BQ17 (FC-BQ17Q) /CSM/FC/FC-BQ/FC-BQ17Q.Seq.d/ 1150 0.0
VHP751 (VHP751Q) /CSM/VH/VHP7-C/VHP751Q.Seq.d/ 1144 0.0
VSJ542 (VSJ542Q) /CSM/VS/VSJ5-B/VSJ542Q.Seq.d/ 1142 0.0
VFN285 (VFN285Q) /CSM/VF/VFN2-D/VFN285Q.Seq.d/ 1142 0.0
SLE729 (SLE729Q) /CSM/SL/SLE7-B/SLE729Q.Seq.d/ 1124 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU268323) Dictyostelium discoideum vegetative cDNA clone:VS... 1170 0.0 1
(BJ326075) Dictyostelium discoideum cDNA clone:dda3a23, 5' e... 1170 0.0 1
(X95568) D.discoideum mRNA for 14-3-3 protein. 1162 0.0 1
(AU284950) Dictyostelium discoideum gamete cDNA clone:FC-BR0... 1150 0.0 1
(AU284949) Dictyostelium discoideum gamete cDNA clone:FC-BR0... 1150 0.0 1
(AU284940) Dictyostelium discoideum gamete cDNA clone:FC-BQ1... 1150 0.0 1
(AU061587) Dictyostelium discoideum slug cDNA, clone SLE729. 1124 0.0 1
(BJ427478) Dictyostelium discoideum cDNA clone:ddv62f13, 5' ... 1116 0.0 1
(AU270084) Dictyostelium discoideum vegetative cDNA clone:VS... 846 0.0 2
(BJ416944) Dictyostelium discoideum cDNA clone:ddv27i22, 5' ... 781 0.0 3
dna update 2009. 7. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54632) RecName: Full=14-3-3-like protein; 360 2e-98
X95568_1(X95568|pid:none) D.discoideum mRNA for 14-3-3 protein. 359 5e-98
AF033311_1(AF033311|pid:none) Xenopus laevis 14-3-3 protein epsi... 303 3e-81
AE014297_2561(AE014297|pid:none) Drosophila melanogaster chromos... 303 4e-81
AE014297_2563(AE014297|pid:none) Drosophila melanogaster chromos... 303 4e-81
AB029307_1(AB029307|pid:none) Lentinula edodes mRNA for 14-3-3, ... 301 2e-80
AY370883_1(AY370883|pid:none) Oncorhynchus mykiss 14-3-3E1 prote... 300 4e-80
AY029473_1(AY029473|pid:none) Schizophyllum commune 14-3-3 prote... 299 5e-80
BC045325_1(BC045325|pid:none) Danio rerio tyrosine 3-monooxygena... 299 5e-80
BT043534_1(BT043534|pid:none) Salmo salar clone HM4_1783 tyrosin... 298 8e-80
protein update 2009. 3.24
PSORT

psg: 0.73 gvh: 0.43 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
40.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: mitochondrial

>> prediction for VSI210 is cyt

5' end seq. ID VSI210F
5' end seq.
>VSI210F.Seq
AAATTTAAAAAATGACCAGAGAAGAAAATGTTTATATGGCTAAATTAGCTGAACAAGCTG
AAAGATATGAAGAAATGGTCGAAGCAATGAAAAAAGTTGCTGAATTAGATGTTGAATTAA
CTGTTGAAGAACGTAATCTTTTATCAGTTGCTTATAAAAATGTTATTGGTGCTCGTCGTG
CCTCATGGAGAATCATCTCATCAATTGAACAAAAAGAAGAATCCAAAGGTAATGAAAACC
ACGTTAAAAAGATCAAAGAATACAAATGTAAAGTCGAAAAGGAACTTACCGACATTTGTA
ATGATATCCTCGAAGTTTTAGAATCTCACTTAATCGTTTCATCAGCCTCTGGTGAATCAA
AAGTTTTCTACTACAAAATGAAAGGTGATTACTTCCGTTATTTAGCTGAATTCGCCACCG
GTAACCCACGTAAAACTTCCGCTGAATCATCATTAATTGCCTACAAAGCTGCCTCTGATA
TCGCTGTCACTGAATTACCACCAACCCACCCAATCCGTTTAGGTCTTGCATTAAACTTTT
CAGTTTTCTACTATGAAATCTTAAACTCCCCAGACAGAGCTTGCAACTTA----------
Length of 5' end seq. 590
3' end seq. ID VSI210Z
3' end seq.
>VSI210Z.Seq
----------GTTTAGGTCNTGCATTAAACNTTTCAGTTTTNAACTATGANATCNTNANC
TCCCCNNNCAGAGCTNGCGGCNCAGCCNAGGCTGCATTCGATGACGCCANTGCCGAANTA
GAAANCCTCTCTGAAGATTCATACAAAG
Length of 3' end seq. 138
Connected seq. ID VSI210P
Connected seq.
>VSI210P.Seq
AAATTTAAAAAATGACCAGAGAAGAAAATGTTTATATGGCTAAATTAGCTGAACAAGCTG
AAAGATATGAAGAAATGGTCGAAGCAATGAAAAAAGTTGCTGAATTAGATGTTGAATTAA
CTGTTGAAGAACGTAATCTTTTATCAGTTGCTTATAAAAATGTTATTGGTGCTCGTCGTG
CCTCATGGAGAATCATCTCATCAATTGAACAAAAAGAAGAATCCAAAGGTAATGAAAACC
ACGTTAAAAAGATCAAAGAATACAAATGTAAAGTCGAAAAGGAACTTACCGACATTTGTA
ATGATATCCTCGAAGTTTTAGAATCTCACTTAATCGTTTCATCAGCCTCTGGTGAATCAA
AAGTTTTCTACTACAAAATGAAAGGTGATTACTTCCGTTATTTAGCTGAATTCGCCACCG
GTAACCCACGTAAAACTTCCGCTGAATCATCATTAATTGCCTACAAAGCTGCCTCTGATA
TCGCTGTCACTGAATTACCACCAACCCACCCAATCCGTTTAGGTCTTGCATTAAACTTTT
CAGTTTTCTACTATGAAATCTTAAACTCCCCAGACAGAGCTTGCAACTTA----------
GTTTAGGTCNTGCATTAAACNTTTCAGTTTTNAACTATGANATCNTNANCTCCCCNNNCA
GAGCTNGCGGCNCAGCCNAGGCTGCATTCGATGACGCCANTGCCGAANTAGAAANCCTCT
CTGAAGATTCATACAAAG
Length of connected seq. 728
Full length Seq ID -
Full length Seq. -
Length of full length seq. -