NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI191
Library VS
(Link to library)
Clone ID VSI191
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15128-1
Original site URL
Representative seq. ID VSI191P
(Link to Original site)
Representative DNA sequence 
>VSI191 (VSI191Q) /CSM/VS/VSI1-D/VSI191Q.Seq.d/
CGCGTCCGAAAATGGGTCGTGTTAGAACAAAGACAATCAAAAGAGCTTCCAAACTCCTCA
TTGAGAAGCATTACCCAAGACTTACCAATGACTTCGACACTAACAAGAGANCTTGCGACA
AACTCGCCAAGATCCCATCAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTACCCATT
TAATGAGACGTATTGCTAATGGTCCAGTCCGTGGTATTTCTTACAAATTACAAGAAGAAG
AAAGAGAAAAGAGAGATAACTACGTTCCACAAGAATCAGCCATCAAAACCAACGAAGTTA
AAATCGATCGTGATGTTGAAGAAATGCTTAAATCTACTTTGGAATTCCCAACCATCCCAC
AAATCCACGTCGTTGACCAAAAGAGATACAACAAAAACACCAAAAAATCAAACAAATAAA
CGTCAGATTGTTGATTATATAAAAAAAAAAXXXXXXXXXXAAAATGGGTCGTGTTAGAAC
AAAGACAATCAAAAGAGCTTCCAAACTCCTCATTGAGAAGCATTACCCAAGACTTACCAA
TGACTTCGACACTAACAAGAGAACTTGCGACAAACTCGCCAAGATCCCATCAAAACGTTT
AAGAAACAAGATTGCTGGTTTCTGTACCCATTTAATGAGACGTATTGCTAATGGTCCAGT
CCGTGGTATTTCTTACAAATTACAAGAAGAAGAAAGAGAAAAGAGAGATAACTACGTTCC
ACAAGAATCAGCCATCAAAACCAACGAAGTTAAAATCGATCGTGATGTTGAAGAAATGCT
TAAATCTACTTTGGAATTCCCAACCATCCCACAAATCCACGTCGTTGACCAAAAGAGATA
CAACAAAAACACCAAAAAATCAAACAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
rvrkwvvleqrqskelpnsslrsitqdlpmtstltrxlatnsprshqnv*etrllvsvpi
**DVLLMVQSVVFLTNYKKKKEKREITTFHKNQPSKPTKLKSIVMLKKCLNLLWNSQPSH
KSTSLTKRDTTKTPKNQTNKRQIVDYIKKK---

---KMGRVRTKTIKRASKLLIEKHYPRLTNDFDTNKRTCDKLAKIPSKRLRNKIAGFCTH
LMRRIANGPVRGISYKLQEEEREKRDNYVPQESAIKTNEVKIDRDVEEMLKSTLEFPTIP
QIHVVDQKRYNKNTKKSNK
Translated Amino Acid sequence (All Frames) 
Frame A:
rvrkwvvleqrqskelpnsslrsitqdlpmtstltrxlatnsprshqnv*etrllvsvpi
**DVLLMVQSVVFLTNYKKKKEKREITTFHKNQPSKPTKLKSIVMLKKCLNLLWNSQPSH
KSTSLTKRDTTKTPKNQTNKRQIVDYIKKK---

---KMGRVRTKTIKRASKLLIEKHYPRLTNDFDTNKRTCDKLAKIPSKRLRNKIAGFCTH
LMRRIANGPVRGISYKLQEEEREKRDNYVPQESAIKTNEVKIDRDVEEMLKSTLEFPTIP
QIHVVDQKRYNKNTKKSNK

Frame B:
asengsc*nkdnqksfqtph*ealpktyq*lrh*qexlrqtrqdpiktfkkqdcwflypf
netyc*wsspwyflqitrrrkrker*lrstrishqnqrs*nrs*c*rna*iyfgipnhpt
nprr*pkeiqqkhqkikqinvrllii*kk---

---kwvvleqrqskelpnsslrsitqdlpmtstltrelatnsprshqnv*etrllvsvpi
**dvllmvqsvvfltnykkkkekreittfhknqpskptklksivmlkkclnllwnsqpsh
kstsltkrdttktpknqt

Frame C:
rpkmgrvrtktikrasklliekhyprltndfdtnkrxcdklakipskrlrnkiagfcthl
mrriangpvrgisyklqeeerekrdnyvpqesaiktnevkidrdveemlkstlefptipq
ihvvdqkrynkntkksnk*tsdc*lykkk---

---ngsc*nkdnqksfqtph*ealpktyq*lrh*qenlrqtrqdpiktfkkqdcwflypf
netyc*wsspwyflqitrrrkrker*lrstrishqnqrs*nrs*c*rna*iyfgipnhpt
nprr*pkeiqqkhqkikq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI191 (VSI191Q) /CSM/VS/VSI1-D/VSI191Q.Seq.d/                        452   e-126
VSJ410 (VSJ410Q) /CSM/VS/VSJ4-A/VSJ410Q.Seq.d/                        442   e-123
VSI470 (VSI470Q) /CSM/VS/VSI4-C/VSI470Q.Seq.d/                        442   e-123
VSI273 (VSI273Q) /CSM/VS/VSI2-D/VSI273Q.Seq.d/                        442   e-123
VSH760 (VSH760Q) /CSM/VS/VSH7-C/VSH760Q.Seq.d/                        442   e-123
VSH591 (VSH591Q) /CSM/VS/VSH5-D/VSH591Q.Seq.d/                        442   e-123
VSG216 (VSG216Q) /CSM/VS/VSG2-A/VSG216Q.Seq.d/                        442   e-123
VSF388 (VSF388Q) /CSM/VS/VSF3-D/VSF388Q.Seq.d/                        442   e-123
VSD873 (VSD873Q) /CSM/VS/VSD8-D/VSD873Q.Seq.d/                        442   e-123
VSD836 (VSD836Q) /CSM/VS/VSD8-B/VSD836Q.Seq.d/                        442   e-123
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268297) Dictyostelium discoideum vegetative cDNA clone:VS...   452   0.0    2
(AU034777) Dictyostelium discoideum slug cDNA, clone SLE319.      442   0.0    2
(AU262192) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    2
(AU268746) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    2
(AU268429) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    2
(AU267929) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    2
(AU268747) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    2
(BJ412565) Dictyostelium discoideum cDNA clone:ddv9e05, 5' e...   442   0.0    2
(AU269870) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    2
(C91349) Dictyostelium discoideum slug cDNA, clone SSK109.        442   0.0    2
dna update 2009. 7. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU124942_1(EU124942|pid:none) Arenicola marina ribosomal protein...   161   2e-38
EU247177_1(EU247177|pid:none) Lycosa singoriensis clone LSsin973...   158   2e-37
AY857475_1(AY857475|pid:none) Suberites domuncula S17 mRNA, comp...   157   4e-37
DQ066305_1(DQ066305|pid:none) Ixodes scapularis isolate IS-6-12L...   156   7e-37
AF548334_1(AF548334|pid:none) Branchiostoma belcheri ribosomal p...   156   9e-37
CP000584_487(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...   156   9e-37
CR382132_602(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...   155   1e-36
BT058153_1(BT058153|pid:none) Salmo salar clone Contig981 40S ri...   155   2e-36
(A5PK63) RecName: Full=40S ribosomal protein S17;  &BC142374_1(B...   155   2e-36
BC091562_1(BC091562|pid:none) Danio rerio zgc:114188, mRNA (cDNA...   155   2e-36
protein update 2009. 3.24
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.37  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for VSI191 is cyt
5' end seq. ID VSI191F
5' end seq. 
>VSI191F.Seq
CGCGTCCGAAAATGGGTCGTGTTAGAACAAAGACAATCAAAAGAGCTTCCAAACTCCTCA
TTGAGAAGCATTACCCAAGACTTACCAATGACTTCGACACTAACAAGAGANCTTGCGACA
AACTCGCCAAGATCCCATCAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTACCCATT
TAATGAGACGTATTGCTAATGGTCCAGTCCGTGGTATTTCTTACAAATTACAAGAAGAAG
AAAGAGAAAAGAGAGATAACTACGTTCCACAAGAATCAGCCATCAAAACCAACGAAGTTA
AAATCGATCGTGATGTTGAAGAAATGCTTAAATCTACTTTGGAATTCCCAACCATCCCAC
AAATCCACGTCGTTGACCAAAAGAGATACAACAAAAACACCAAAAAATCAAACAAATAAA
CGTCAGATTGTTGATTATATAAAAAAAAAA----------
Length of 5' end seq. 450
3' end seq. ID VSI191Z
3' end seq. 
>VSI191Z.Seq
----------AAAATGGGTCGTGTTAGAACAAAGACAATCAAAAGAGCTTCCAAACTCCT
CATTGAGAAGCATTACCCAAGACTTACCAATGACTTCGACACTAACAAGAGAACTTGCGA
CAAACTCGCCAAGATCCCATCAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTACCCA
TTTAATGAGACGTATTGCTAATGGTCCAGTCCGTGGTATTTCTTACAAATTACAAGAAGA
AGAAAGAGAAAAGAGAGATAACTACGTTCCACAAGAATCAGCCATCAAAACCAACGAAGT
TAAAATCGATCGTGATGTTGAAGAAATGCTTAAATCTACTTTGGAATTCCCAACCATCCC
ACAAATCCACGTCGTTGACCAAAAGAGATACAACAAAAACACCAAAAAATCAAACAAA
Length of 3' end seq. 408
Connected seq. ID VSI191P
Connected seq. 
>VSI191P.Seq
CGCGTCCGAAAATGGGTCGTGTTAGAACAAAGACAATCAAAAGAGCTTCCAAACTCCTCA
TTGAGAAGCATTACCCAAGACTTACCAATGACTTCGACACTAACAAGAGANCTTGCGACA
AACTCGCCAAGATCCCATCAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTACCCATT
TAATGAGACGTATTGCTAATGGTCCAGTCCGTGGTATTTCTTACAAATTACAAGAAGAAG
AAAGAGAAAAGAGAGATAACTACGTTCCACAAGAATCAGCCATCAAAACCAACGAAGTTA
AAATCGATCGTGATGTTGAAGAAATGCTTAAATCTACTTTGGAATTCCCAACCATCCCAC
AAATCCACGTCGTTGACCAAAAGAGATACAACAAAAACACCAAAAAATCAAACAAATAAA
CGTCAGATTGTTGATTATATAAAAAAAAAA----------AAAATGGGTCGTGTTAGAAC
AAAGACAATCAAAAGAGCTTCCAAACTCCTCATTGAGAAGCATTACCCAAGACTTACCAA
TGACTTCGACACTAACAAGAGAACTTGCGACAAACTCGCCAAGATCCCATCAAAACGTTT
AAGAAACAAGATTGCTGGTTTCTGTACCCATTTAATGAGACGTATTGCTAATGGTCCAGT
CCGTGGTATTTCTTACAAATTACAAGAAGAAGAAAGAGAAAAGAGAGATAACTACGTTCC
ACAAGAATCAGCCATCAAAACCAACGAAGTTAAAATCGATCGTGATGTTGAAGAAATGCT
TAAATCTACTTTGGAATTCCCAACCATCCCACAAATCCACGTCGTTGACCAAAAGAGATA
CAACAAAAACACCAAAAAATCAAACAAA
Length of connected seq. 858
Full length Seq ID -
Full length Seq. -
Length of full length seq. -