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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHA685
Library AH
(Link to library)
Clone ID AHA685
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16424-1
Original site URL
Representative seq. ID AHA685P
(Link to Original site)
Representative DNA sequence 
>AHA685 (AHA685Q) /CSM/AH/AHA6-D/AHA685Q.Seq.d/
TTAAAGGAAGCTAAATTACCAGATCAATTACCATTGATCATTGTTTGTGATCGTTACGAA
TTCATCTCTGATCTTACCAACTATCTCTACAAAAACAATCTCTCCAAATATATCGAAGCC
TACGTTCAAAAGATTAATCCAGTCAATACACCATTGGTTGTAGGTGCACTTTTGGATTTA
GATTGTCAAGAGGACTATTTACGTAATCTCATTATGAGTGTTAGAAATATGTGTCCAGCC
GATTCTTTAGTTGAACAAGTTGAAAAGAGAAATCGTTTGAAACTTTTACTTCCATGGTTA
GAGGCAAGAGTTGCCGAAGGTAACATTGAACCAGCCATTCACAACGCTTTGGCCAAGATT
TACATTGATTCCAATAAGAATCCAGAAGCTTTCCTCTTACACAATCAATTCTATGATAGT
AAAGTCGTTGGTAAATATTGTGAAAAACGTGATCCATACCTTTCATTCGTTGCCTACAAA
CGTGGTTTATGTGATTATGAATTGATTGAAGTCACCAATAAGAATACCCTCTTCAAGAAT
CAAGCACGTTATCTTGTTGAACGTCAAGATCCAGATCTTTGGGCTTACGTTTTATCCGAT
CAAAATGAATACAAGAGATCTCTCATTGATCAAGTCGTTCAAACCGCTCTCCCAGAXXXX
XXXXXXGTTCATTAGGTCATCTCCCATTGGTTAAGCCATACTTGGTATCTGCTCAAGATC
AAAATGTAGCCGCTCTCAATGAAGCTCTCAATGAATTATACGTCGAAGAAGAGGGTTATG
AATCCTTGAGATCCTCAATCGATGCCAACTCCAACTTTGGCACCATTGCTCTCGCTCAAA
AACTTGAAAAACATGAACTCCTCGAATTCCGTAGAATCGCCGCCTATTTGTACAAAAAGA
ATAATCGTTGGGCTCAATCAGTTGAACTCTCTAAAAAAGATAAACTCTACAAAGATGCCA
TTCAATCTGCCTCAGACTCAAAGAATCCAGCCATTGGCGAAGAACTTTTACAATACTTTG
TTGATCAACAAAATAATAGTGCCTTTGCTGCTTGTCTTTACACTTGTTACGACTTTTTGA
AACCAGATGCTGTCATCGAATTGGCTTGGAGAAATAATATCCTCAATTACTCATTCCCAT
ATCTCATTCAATACGTTAAAGAATATACAACCAAAGTTGATCAATTGGTCGATGATTTCA
AAGCTCGTCAAAAGAAAACTGAAGAAGAAAAAGAACAACAAAATATTGAATCCTCTCAAT
ATCAACCAGATCTTACTAACCTCTCATATGGTTACGCAGCCACTGGTGGTATGTTAGCTC
TTCCACCAGCTGTAGGATATCAACAACAACAACAACCACAACAAATGTATAATCCAAATC
AAATGATGGGGGTTTCCAACAAAATTAAATCAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
LKEAKLPDQLPLIIVCDRYEFISDLTNYLYKNNLSKYIEAYVQKINPVNTPLVVGALLDL
DCQEDYLRNLIMSVRNMCPADSLVEQVEKRNRLKLLLPWLEARVAEGNIEPAIHNALAKI
YIDSNKNPEAFLLHNQFYDSKVVGKYCEKRDPYLSFVAYKRGLCDYELIEVTNKNTLFKN
QARYLVERQDPDLWAYVLSDQNEYKRSLIDQVVQTALP---

---SLGHLPLVKPYLVSAQDQNVAALNEALNELYVEEEGYESLRSSIDANSNFGTIALAQ
KLEKHELLEFRRIAAYLYKKNNRWAQSVELSKKDKLYKDAIQSASDSKNPAIGEELLQYF
VDQQNNSAFAACLYTCYDFLKPDAVIELAWRNNILNYSFPYLIQYVKEYTTKVDQLVDDF
KARQKKTEEEKEQQNIESSQYQPDLTNLSYGYAATGGMLALPPAVGYQQQQQPQQMYNPN
QMMGVSNKIKSI
Translated Amino Acid sequence (All Frames) 
Frame A:
LKEAKLPDQLPLIIVCDRYEFISDLTNYLYKNNLSKYIEAYVQKINPVNTPLVVGALLDL
DCQEDYLRNLIMSVRNMCPADSLVEQVEKRNRLKLLLPWLEARVAEGNIEPAIHNALAKI
YIDSNKNPEAFLLHNQFYDSKVVGKYCEKRDPYLSFVAYKRGLCDYELIEVTNKNTLFKN
QARYLVERQDPDLWAYVLSDQNEYKRSLIDQVVQTALP---

---vh*vishwlshtwyllkikm*plsmklsmnytskkrvmnp*dpqsmptptlapllsl
knlknmnssnsvesppictkriivglnqlnslkkinstkmpfnlpqtqriqplaknfynt
llinkiivplllvftlvttf*nqmlssnwlgeiissithshisfntlkniqpklinwsmi
sklvkrklkkkknnkilnplninqilltshmvtqplvvc*lfhql*dinnnnnhnkciiq
ik*wgfptklnq

Frame B:
*rklnyqinyh*slfvivtnsslilptistktispniskptfkrliqsihhwl*vhfwi*
ivkrtiyvisl*vleicvqpil*lnklkreiv*nfyfhg*rqelpkvtlnqpfttlwprf
tlipiriqklssytinsmivkslvnivknvihtfhslptnvvyvimn*lkspiripssri
khvillnvkiqifgltfypikmntrdlsliksfkplsq---

---firsspig*ailgicsrskcsrsq*ssq*iirrrrgl*ileilnrcqlqlwhhcsrs
kt*kt*tprip*nrrlfvqke*slgsis*tl*kr*tlqrchsiclrlkesshwrrtftil
c*stk**clcclslhllrlfetrcchriglek*ypqllipishsir*riynqs*sigr*f
qsssken*rrkrttky*ilsistrsy*pliwlrshwwyvssstscristttttttnv*sk
sndggfqqn*in

Frame C:
kgs*itrsitidhcl*slrihl*syqlslqkqslqiyrslrskd*ssqytigcrctfgfr
lsrglft*shyec*kyvssrffs*ts*keksfetftsmvrgkscrr*h*tshsqrfgqdl
h*fq*esrsfpltqsil***srw*il*kt*sipfirclqtwfm*l*id*shq*eyplqes
stlsc*tsrsrslglrfirsk*iqeish*ssrsnrspr---

---SLGHLPLVKPYLVSAQDQNVAALNEALNELYVEEEGYESLRSSIDANSNFGTIALAQ
KLEKHELLEFRRIAAYLYKKNNRWAQSVELSKKDKLYKDAIQSASDSKNPAIGEELLQYF
VDQQNNSAFAACLYTCYDFLKPDAVIELAWRNNILNYSFPYLIQYVKEYTTKVDQLVDDF
KARQKKTEEEKEQQNIESSQYQPDLTNLSYGYAATGGMLALPPAVGYQQQQQPQQMYNPN
QMMGVSNKIKSI
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHA685 (AHA685Q) /CSM/AH/AHA6-D/AHA685Q.Seq.d/                       2597   0.0
AHH834 (AHH834Q) /CSM/AH/AHH8-B/AHH834Q.Seq.d/                       1328   0.0
AHE144 (AHE144Q) /CSM/AH/AHE1-B/AHE144Q.Seq.d/                       1328   0.0
AHA847 (AHA847Q) /CSM/AH/AHA8-B/AHA847Q.Seq.d/                       1328   0.0
AHO328 (AHO328Q) /CSM/AH/AHO3-B/AHO328Q.Seq.d/                       1320   0.0
AHI572 (AHI572Q) /CSM/AH/AHI5-C/AHI572Q.Seq.d/                       1320   0.0
AFI829 (AFI829Q) /CSM/AF/AFI8-B/AFI829Q.Seq.d/                       1277   0.0
AHI164 (AHI164Q) /CSM/AH/AHI1-C/AHI164Q.Seq.d/                       1273   0.0
SHF308 (SHF308Q) /CSM/SH/SHF3-A/SHF308Q.Seq.d/                       1269   0.0
AHN701 (AHN701Q) /CSM/AH/AHN7-A/AHN701Q.Seq.d/                       1203   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M83660|M83660.1 Dictyostelium discoideum clathrin heavy chain (chcA) mRNA, complete cds.  1328   0.0    3
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.  1328   0.0    3
AY119615|AY119615.1 Drosophila melanogaster LD43101 full insert cDNA.    44   2e-12  5
Z14133|Z14133.1 D.melanogaster Chc mRNA for clathrin heavy chain.    44   2e-12  5
CQ591513|CQ591513.1 Sequence 19271 from Patent WO0171042.          44   2e-12  5
CQ591512|CQ591512.1 Sequence 19270 from Patent WO0171042.          44   1e-11  5
AC019868|AC019868.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    44   2e-10  5
AC092401|AC092401.1 Drosophila melanogaster, chromosome X, region 13E-13F, BAC clone BACR25C18, complete sequence.    44   3e-10  9
AC013431|AC013431.9 Drosophila melanogaster, chromosome X, region 13E-13F, BAC clone BACR22H11, complete sequence.    44   7e-08  8
AE003500|AE003500.3 Drosophila melanogaster chromosome X, section 52 of 74 of the complete sequence.    44   1e-06  8
dna update 2004. 2.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P29742) RecName: Full=Clathrin heavy chain;  &AE014298_2338(AE0...   318   2e-85
BC084145_1(BC084145|pid:none) Xenopus tropicalis hypothetical LO...   310   8e-83
(Q00610) RecName: Full=Clathrin heavy chain 1; AltName: Full=CLH...   310   1e-82
AK143503_1(AK143503|pid:none) Mus musculus 8 cells embryo 8 cell...   310   1e-82
AL592222_6(AL592222|pid:none) Mouse DNA sequence from clone RP23...   310   1e-82
D21260_1(D21260|pid:none) Homo sapiens KIAA0034 mRNA, partial cds.    310   1e-82
BC163714_1(BC163714|pid:none) Danio rerio clathrin, heavy polype...   308   2e-82
(P11442) RecName: Full=Clathrin heavy chain 1;  &J03583_1(J03583...   308   4e-82
BX640615_1(BX640615|pid:none) Homo sapiens mRNA; cDNA DKFZp686F1...   308   4e-82
AY648777_1(AY648777|pid:none) Danio rerio clatherin heavy chain ...   306   1e-81
protein update 2009. 4.27
PSORT 

 psg: 0.88  gvh: 0.26  alm: 0.46  top: 0.27  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for AHA685 is cyt
5' end seq. ID AHA685F
5' end seq. 
>AHA685F.Seq
TTAAAGGAAGCTAAATTACCAGATCAATTACCATTGATCATTGTTTGTGATCGTTACGAA
TTCATCTCTGATCTTACCAACTATCTCTACAAAAACAATCTCTCCAAATATATCGAAGCC
TACGTTCAAAAGATTAATCCAGTCAATACACCATTGGTTGTAGGTGCACTTTTGGATTTA
GATTGTCAAGAGGACTATTTACGTAATCTCATTATGAGTGTTAGAAATATGTGTCCAGCC
GATTCTTTAGTTGAACAAGTTGAAAAGAGAAATCGTTTGAAACTTTTACTTCCATGGTTA
GAGGCAAGAGTTGCCGAAGGTAACATTGAACCAGCCATTCACAACGCTTTGGCCAAGATT
TACATTGATTCCAATAAGAATCCAGAAGCTTTCCTCTTACACAATCAATTCTATGATAGT
AAAGTCGTTGGTAAATATTGTGAAAAACGTGATCCATACCTTTCATTCGTTGCCTACAAA
CGTGGTTTATGTGATTATGAATTGATTGAAGTCACCAATAAGAATACCCTCTTCAAGAAT
CAAGCACGTTATCTTGTTGAACGTCAAGATCCAGATCTTTGGGCTTACGTTTTATCCGAT
CAAAATGAATACAAGAGATCTCTCATTGATCAAGTCGTTCAAACCGCTCTCCCAGANNNN
NNNNNN
Length of 5' end seq. 666
3' end seq. ID AHA685Z
3' end seq. 
>AHA685Z.Seq
NNNNNNNNNNGTTCATTAGGTCATCTCCCATTGGTTAAGCCATACTTGGTATCTGCTCAA
GATCAAAATGTAGCCGCTCTCAATGAAGCTCTCAATGAATTATACGTCGAAGAAGAGGGT
TATGAATCCTTGAGATCCTCAATCGATGCCAACTCCAACTTTGGCACCATTGCTCTCGCT
CAAAAACTTGAAAAACATGAACTCCTCGAATTCCGTAGAATCGCCGCCTATTTGTACAAA
AAGAATAATCGTTGGGCTCAATCAGTTGAACTCTCTAAAAAAGATAAACTCTACAAAGAT
GCCATTCAATCTGCCTCAGACTCAAAGAATCCAGCCATTGGCGAAGAACTTTTACAATAC
TTTGTTGATCAACAAAATAATAGTGCCTTTGCTGCTTGTCTTTACACTTGTTACGACTTT
TTGAAACCAGATGCTGTCATCGAATTGGCTTGGAGAAATAATATCCTCAATTACTCATTC
CCATATCTCATTCAATACGTTAAAGAATATACAACCAAAGTTGATCAATTGGTCGATGAT
TTCAAAGCTCGTCAAAAGAAAACTGAAGAAGAAAAAGAACAACAAAATATTGAATCCTCT
CAATATCAACCAGATCTTACTAACCTCTCATATGGTTACGCAGCCACTGGTGGTATGTTA
GCTCTTCCACCAGCTGTAGGATATCAACAACAACAACAACCACAACAAATGTATAATCCA
AATCAAATGATGGGGGTTTCCAACAAAATTAAATCAATA
Length of 3' end seq. 759
Connected seq. ID AHA685P
Connected seq. 
>AHA685P.Seq
TTAAAGGAAGCTAAATTACCAGATCAATTACCATTGATCATTGTTTGTGATCGTTACGAA
TTCATCTCTGATCTTACCAACTATCTCTACAAAAACAATCTCTCCAAATATATCGAAGCC
TACGTTCAAAAGATTAATCCAGTCAATACACCATTGGTTGTAGGTGCACTTTTGGATTTA
GATTGTCAAGAGGACTATTTACGTAATCTCATTATGAGTGTTAGAAATATGTGTCCAGCC
GATTCTTTAGTTGAACAAGTTGAAAAGAGAAATCGTTTGAAACTTTTACTTCCATGGTTA
GAGGCAAGAGTTGCCGAAGGTAACATTGAACCAGCCATTCACAACGCTTTGGCCAAGATT
TACATTGATTCCAATAAGAATCCAGAAGCTTTCCTCTTACACAATCAATTCTATGATAGT
AAAGTCGTTGGTAAATATTGTGAAAAACGTGATCCATACCTTTCATTCGTTGCCTACAAA
CGTGGTTTATGTGATTATGAATTGATTGAAGTCACCAATAAGAATACCCTCTTCAAGAAT
CAAGCACGTTATCTTGTTGAACGTCAAGATCCAGATCTTTGGGCTTACGTTTTATCCGAT
CAAAATGAATACAAGAGATCTCTCATTGATCAAGTCGTTCAAACCGCTCTCCCAGA----
------GTTCATTAGGTCATCTCCCATTGGTTAAGCCATACTTGGTATCTGCTCAAGATC
AAAATGTAGCCGCTCTCAATGAAGCTCTCAATGAATTATACGTCGAAGAAGAGGGTTATG
AATCCTTGAGATCCTCAATCGATGCCAACTCCAACTTTGGCACCATTGCTCTCGCTCAAA
AACTTGAAAAACATGAACTCCTCGAATTCCGTAGAATCGCCGCCTATTTGTACAAAAAGA
ATAATCGTTGGGCTCAATCAGTTGAACTCTCTAAAAAAGATAAACTCTACAAAGATGCCA
TTCAATCTGCCTCAGACTCAAAGAATCCAGCCATTGGCGAAGAACTTTTACAATACTTTG
TTGATCAACAAAATAATAGTGCCTTTGCTGCTTGTCTTTACACTTGTTACGACTTTTTGA
AACCAGATGCTGTCATCGAATTGGCTTGGAGAAATAATATCCTCAATTACTCATTCCCAT
ATCTCATTCAATACGTTAAAGAATATACAACCAAAGTTGATCAATTGGTCGATGATTTCA
AAGCTCGTCAAAAGAAAACTGAAGAAGAAAAAGAACAACAAAATATTGAATCCTCTCAAT
ATCAACCAGATCTTACTAACCTCTCATATGGTTACGCAGCCACTGGTGGTATGTTAGCTC
TTCCACCAGCTGTAGGATATCAACAACAACAACAACCACAACAAATGTATAATCCAAATC
AAATGATGGGGGTTTCCAACAAAATTAAATCAATA
Length of connected seq. 1405
Full length Seq ID -
Full length Seq. -
Length of full length seq. -