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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI183
Library VS
(Link to library)
Clone ID VSI183
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U06797-1
Original site URL
Representative seq. ID VSI183P
(Link to Original site)
Representative DNA sequence 
>VSI183 (VSI183Q) /CSM/VS/VSI1-D/VSI183Q.Seq.d/
CACACCATAATCAAATAATTAATTATAATTATAAAAAATGTTAATTGTTTCAACAGGAGA
TCAACATGGCCTAGTTTTGGCTGTTTTAGCTATTGTTGCATTTGTTTTCTTCCACAAATC
AAATCATCGTTTCGCTTTCCATTTTGACATTGTAATTTTAGCAGCATGTGCAGGTATTAC
ATTCGCATTTTCATCAAATTCAGTAGTAACACAATTCGAATATATGTTTGATTTAGCTGT
TTCAGCATTGGTTGGAGGCTGTGCATTGTATGCTTTACAAAAGGGTCAAAAATATATTGT
ATATGGTTATTTAATTCATGCAATTTGGGATTTATTACATCATAGTTTTTTCCATGTTGC
AACCACTAAGACTCCATATTGGTATCCAACTTTTTGTATGGTTTATGATTTCTTTGTTGC
TTTTTATTATTTTTCAAAAAAATAAAATAATAAAATCAATTATGATTATTAAAAACAAAA
AAATAAAAAAAAAATTAAAAAAAAAAXXXXXXXXXXAATNAAATCATCGGTTTCNGCTTT
CCATTTTGACATTGTAATTTTAGCAGCATGTGCAGGTATTACATTCGCATTTTCATCAAA
TTCAGTAGTAACACAATTCGAATATATGTTTGATTTAGCTGTTTCAGCATTGGTTGGAGG
CTGTGCATTGTATGCTTTACAAAAGGGTCAAAAANATATTGTATATGGTTATTTAATTCA
TGCAATTTGGGATTTATTACATCATAGTTTTTTCCATGTTGCAACCACTAAGACTCCATA
TTGGTATCCAACNTTTTGTATGGTTTATGATTTCTTTGGTGCTTTTTATTATTTTTCAAA
AAAATAAAATAATAAAATCAATTANATTATTAAAAACAAAAAAAAAAAAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
hhnqiinynykkc*lfqqeinma*fwlf*lllhlfsstnqiivslsiltl*f*qhvqvlh
shfhqiq**hnsnicli*lfqhwleavhcmlykrvknilymvi*FMQFGIYYIIVFSMLQ
PLRLHIGIQLFVWFMISLLLFIIFQKNKIIKSIMIIKNKKIKKKLKKK---

---XKSSVSAFHFDIVILAACAGITFAFSSNSVVTQFEYMFDLAVSALVGGCALYALQKG
QKXIVYGYLIHAIWDLLHHSFFHVATTKTPYWYPTFCMVYDFFGAFYYFSKK*nnkinxi
iknkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
htiik*liiiiknvncfnrrstwpsfgcfsyccicflpqikssfrfpf*hcnfssmcryy
irifikfssntiriyv*fscfsigwrlcivcftkgskiyciwlfnscnlgfits*ffpcc
nh*dsilvsnflygl*flccfllffkkik**nql*llktkk*kkn*kk---

---nxiigfxfpf*hcnfssmcryyirifikfssntiriyv*fscfsigwrlcivcftkg
skxyciwlfnscnlgfits*ffpccnh*dsilvsnxlygl*flwcfllffkkik**nqlx
y*kqkkkk

Frame B:
tp*snn*l*l*kmlivstgdqhglvlavlaivafvffhksnhrfafhfdivilaacagit
fafssnsvvtqfeymfdlavsalvggcalyalqkgqkyivygylihaiwdllhhsffhva
ttktpywyptfcmvydffvafyyfskk*nnkinydy*kqknkkkikkk---

---XKSSVSAFHFDIVILAACAGITFAFSSNSVVTQFEYMFDLAVSALVGGCALYALQKG
QKXIVYGYLIHAIWDLLHHSFFHVATTKTPYWYPTFCMVYDFFGAFYYFSKK*nnkinxi
iknkkkkk

Frame C:
hhnqiinynykkc*lfqqeinma*fwlf*lllhlfsstnqiivslsiltl*f*qhvqvlh
shfhqiq**hnsnicli*lfqhwleavhcmlykrvknilymvi*FMQFGIYYIIVFSMLQ
PLRLHIGIQLFVWFMISLLLFIIFQKNKIIKSIMIIKNKKIKKKLKKK---

---xnhrfxlsiltl*f*qhvqvlhshfhqiq**hnsnicli*lfqhwleavhcmlykrv
kxilymvi*fmqfgiyyiivfsmlqplrlhigiqxfvwfmislvlfiifqknkiiksixl
lktkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI183 (VSI183Q) /CSM/VS/VSI1-D/VSI183Q.Seq.d/                        862   0.0
VSG367 (VSG367Q) /CSM/VS/VSG3-C/VSG367Q.Seq.d/                        854   0.0
SSM764 (SSM764Q) /CSM/SS/SSM7-C/SSM764Q.Seq.d/                         40   0.057
VSF806 (VSF806Q) /CSM/VS/VSF8-A/VSF806Q.Seq.d/                         36   0.89
VHA115 (VHA115Q) /CSM/VH/VHA1-A/VHA115Q.Seq.d/                         36   0.89
VFB393 (VFB393Q) /CSM/VF/VFB3-D/VFB393Q.Seq.d/                         36   0.89
SSC551 (SSC551Q) /CSM/SS/SSC5-C/SSC551Q.Seq.d/                         36   0.89
SLB325 (SLB325Q) /CSM/SL/SLB3-B/SLB325Q.Seq.d/                         36   0.89
SFA504 (SFA504Q) /CSM/SF/SFA5-A/SFA504Q.Seq.d/                         36   0.89
FC-BA24 (FC-BA24Q) /CSM/FC/FC-BA/FC-BA24Q.Seq.d/                       36   0.89
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268283) Dictyostelium discoideum vegetative cDNA clone:VS...   773   0.0    1
(AU266372) Dictyostelium discoideum vegetative cDNA clone:VS...   765   0.0    1
(AU268284) Dictyostelium discoideum vegetative cDNA clone:VS...   613   e-171  1
(EJ656294) 1092955007102 Global-Ocean-Sampling_GS-30-02-01-1...    42   0.005  3
(EJ656639) 1092955008062 Global-Ocean-Sampling_GS-30-02-01-1...    42   0.006  3
(AM466208) Vitis vinifera contig VV78X183599.12, whole genom...    44   0.006  5
(ED336245) AUAC-aac27e05.b1 Ascaris suum whole genome shotgu...    44   0.009  2
(ED366948) AUAC-aaz04f05.g1 Ascaris suum whole genome shotgu...    40   0.11   2
(AL109819) Arabidopsis thaliana DNA chromosome 4, BAC clone ...    40   0.14   3
(AL109737) Arabidopsis thaliana DNA *** SEQUENCING IN PROGRE...    40   0.14   3
dna update 2009. 7. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000532_57(CP000532|pid:none) Polaromonas naphthalenivorans CJ2...    40   0.099
(P34853) RecName: Full=NADH-ubiquinone oxidoreductase chain 4;  ...    34   5.4
AP006618_2315(AP006618|pid:none) Nocardia farcinica IFM 10152 DN...    33   9.3
CP000927_2633(CP000927|pid:none) Caulobacter sp. K31, complete g...    33   9.3
AE017354_188(AE017354|pid:none) Legionella pneumophila subsp. pn...    33   9.3
protein update 2009. 3.24
PSORT 

 psg: 0.95  gvh: 0.61  alm: 0.19  top: 0.83  tms: 0.20  mit: 0.34  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 12.0 %: mitochondrial
	 12.0 %: vacuolar
	  8.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for VSI183 is end
5' end seq. ID VSI183F
5' end seq. 
>VSI183F.Seq
CACACCATAATCAAATAATTAATTATAATTATAAAAAATGTTAATTGTTTCAACAGGAGA
TCAACATGGCCTAGTTTTGGCTGTTTTAGCTATTGTTGCATTTGTTTTCTTCCACAAATC
AAATCATCGTTTCGCTTTCCATTTTGACATTGTAATTTTAGCAGCATGTGCAGGTATTAC
ATTCGCATTTTCATCAAATTCAGTAGTAACACAATTCGAATATATGTTTGATTTAGCTGT
TTCAGCATTGGTTGGAGGCTGTGCATTGTATGCTTTACAAAAGGGTCAAAAATATATTGT
ATATGGTTATTTAATTCATGCAATTTGGGATTTATTACATCATAGTTTTTTCCATGTTGC
AACCACTAAGACTCCATATTGGTATCCAACTTTTTGTATGGTTTATGATTTCTTTGTTGC
TTTTTATTATTTTTCAAAAAAATAAAATAATAAAATCAATTATGATTATTAAAAACAAAA
AAATAAAAAAAAAATTAAAAAAAAAA----------
Length of 5' end seq. 506
3' end seq. ID VSI183Z
3' end seq. 
>VSI183Z.Seq
----------AATNAAATCATCGGTTTCNGCTTTCCATTTTGACATTGTAATTTTAGCAG
CATGTGCAGGTATTACATTCGCATTTTCATCAAATTCAGTAGTAACACAATTCGAATATA
TGTTTGATTTAGCTGTTTCAGCATTGGTTGGAGGCTGTGCATTGTATGCTTTACAAAAGG
GTCAAAAANATATTGTATATGGTTATTTAATTCATGCAATTTGGGATTTATTACATCATA
GTTTTTTCCATGTTGCAACCACTAAGACTCCATATTGGTATCCAACNTTTTGTATGGTTT
ATGATTTCTTTGGTGCTTTTTATTATTTTTCAAAAAAATAAAATAATAAAATCAATTANA
TTATTAAAAACAAAAAAAAAAAAAAAA
Length of 3' end seq. 377
Connected seq. ID VSI183P
Connected seq. 
>VSI183P.Seq
CACACCATAATCAAATAATTAATTATAATTATAAAAAATGTTAATTGTTTCAACAGGAGA
TCAACATGGCCTAGTTTTGGCTGTTTTAGCTATTGTTGCATTTGTTTTCTTCCACAAATC
AAATCATCGTTTCGCTTTCCATTTTGACATTGTAATTTTAGCAGCATGTGCAGGTATTAC
ATTCGCATTTTCATCAAATTCAGTAGTAACACAATTCGAATATATGTTTGATTTAGCTGT
TTCAGCATTGGTTGGAGGCTGTGCATTGTATGCTTTACAAAAGGGTCAAAAATATATTGT
ATATGGTTATTTAATTCATGCAATTTGGGATTTATTACATCATAGTTTTTTCCATGTTGC
AACCACTAAGACTCCATATTGGTATCCAACTTTTTGTATGGTTTATGATTTCTTTGTTGC
TTTTTATTATTTTTCAAAAAAATAAAATAATAAAATCAATTATGATTATTAAAAACAAAA
AAATAAAAAAAAAATTAAAAAAAAAA----------AATNAAATCATCGGTTTCNGCTTT
CCATTTTGACATTGTAATTTTAGCAGCATGTGCAGGTATTACATTCGCATTTTCATCAAA
TTCAGTAGTAACACAATTCGAATATATGTTTGATTTAGCTGTTTCAGCATTGGTTGGAGG
CTGTGCATTGTATGCTTTACAAAAGGGTCAAAAANATATTGTATATGGTTATTTAATTCA
TGCAATTTGGGATTTATTACATCATAGTTTTTTCCATGTTGCAACCACTAAGACTCCATA
TTGGTATCCAACNTTTTGTATGGTTTATGATTTCTTTGGTGCTTTTTATTATTTTTCAAA
AAAATAAAATAATAAAATCAATTANATTATTAAAAACAAAAAAAAAAAAAAAA
Length of connected seq. 883
Full length Seq ID -
Full length Seq. -
Length of full length seq. -