NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI179
Library VS
(Link to library)
Clone ID VSI179
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14756-1
Original site URL
Representative seq. ID VSI179F
(Link to Original site)
Representative DNA sequence 
>VSI179 (VSI179Q) /CSM/VS/VSI1-D/VSI179Q.Seq.d/
ATTTTCACACACAAACCTTCTTTAAAAAAAAAAAAATAATANTAATAAAAATCACCTAAA
TCCATCAATAACCATTTAAATTAATAAACATTAATAAATNTAAATAAATAAAAATAAAAT
NTAAATNTAAATNTAATATAAATNTTAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
FHTQTFFKKKKIIXIKIT*ihq*pfklininkxk*ikikxkxkxninxkkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
ifthkpslkkkk*x**kspksinnhln**tlinxnk*k*nxnxnxi*xlkk---


Frame B:
fshtnll*kkknnxnknhlnpsiti*inkh**x*inknkx*x*x*ykx*kk---


Frame C:
FHTQTFFKKKKIIXIKIT*ihq*pfklininkxk*ikikxkxkxninxkkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI179 (VSI179Q) /CSM/VS/VSI1-D/VSI179Q.Seq.d/                         46   2e-04
AFJ262 (AFJ262Q) /CSM/AF/AFJ2-C/AFJ262Q.Seq.d/                         30   9.3
own update 2001.11.13
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    46   0.38   1
(AU268276) Dictyostelium discoideum vegetative cDNA clone:VS...    46   0.38   1
dna update 2009. 7. 4
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 70,208,019
protein update 2009. 3.24
PSORT -
5' end seq. ID VSI179F
5' end seq. 
>VSI179F.Seq
ATTTTCACACACAAACCTTCTTTAAAAAAAAAAAAATAATANTAATAAAAATCACCTAAA
TCCATCAATAACCATTTAAATTAATAAACATTAATAAATNTAAATAAATAAAAATAAAAT
NTAAATNTAAATNTAATATAAATNTTAAAAAAAAAA----------
Length of 5' end seq. 156
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -