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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI155
Library VS
(Link to library)
Clone ID VSI155
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U06921-1
Original site URL
Representative seq. ID VSI155E
(Link to Original site)
Representative DNA sequence 
>VSI155 (VSI155Q) /CSM/VS/VSI1-C/VSI155Q.Seq.d/
CAAATAAATATAAATCAATTGCAATTATTTCTGATGATATTAGATCAATGACAAATACTT
TTAGTTCAATATTAAATGGTGAAACTAGAGAAAAGAATAATATAACATATTTTTGTTTTA
CAAGTACACCAAAACCAAAAGCTTTAGAATTATTTGGTGATACAAGAGGTAATTTAAGAG
TACCATTTCATACTTATTCAATAGAGAAAGCATTACAAGATAAAATTGTTATGAATTGTA
TTGATCATTATACAACTGTTTCAATTTTAACCAAAGTTTCAAATGATAAAACAAGTGATA
CCTTTTTTAATGATGAAAATAAATCATCTTATCATATTTTAAAACATCCAAATAATGATA
AAAAAATAATTCAAGAAAAGTCATCATATATTATAAAACATTTTTTAAAATTAAGAGAAC
AAATTAATAATGATGAATTTAATTGTAGAGCAATGGTTAGTTACAAATAGTAGAGAACAA
ATTTTATTATATAAACAAACATTGGAATCATTGGTGAAATCATTACCAAAGAATCAAAAA
TTTGATATTATAGCATGCTTTGCAAA
sequence update 2001. 3.25
Translated Amino Acid sequence 
NKYKSIAIISDDIRSMTNTFSSILNGETREKNNITYFCFTSTPKPKALELFGDTRGNLRV
PFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKTSDTFFNDENKSSYHILKHPNNDK
KIIQEKSSYIIKHFLKLREQINNDEFNCRAMVSYK**rtnfii*tnigiigeiitkeski
*yysmlck
Translated Amino Acid sequence (All Frames) 
Frame A:
qininqlqlflmildq*qillvqy*mvklekrii*hifvlqvhqnqkl*nylviqevi*e
yhfiliq*rkhykikll*ivliiiqlfqf*pkfqmikqvipflmmkinhliif*niqimi
kk*fkkshhil*nif*n*enklimmnliveqwlvtnsreqillykqtleslvkslpknqk
fdiiacfa


Frame B:
k*i*incnyf**y*indkyf*fnikw*n*rke*yniflfykytktksfriiw*ykr*fks
tisylfnresitr*ncyely*slyncfnfnqsfk**nk*ylf***k*iilsyfktsk***
knnsrkviiyyktffkikrtn****i*l*sng*lqivenkfyyinkhwnhw*nhyqrikn
lil*halq


Frame C:
NKYKSIAIISDDIRSMTNTFSSILNGETREKNNITYFCFTSTPKPKALELFGDTRGNLRV
PFHTYSIEKALQDKIVMNCIDHYTTVSILTKVSNDKTSDTFFNDENKSSYHILKHPNNDK
KIIQEKSSYIIKHFLKLREQINNDEFNCRAMVSYK**rtnfii*tnigiigeiitkeski
*yysmlck
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI155 (VSI155Q) /CSM/VS/VSI1-C/VSI155Q.Seq.d/                       1080   0.0
VSA871 (VSA871Q) /CSM/VS/VSA8-C/VSA871Q.Seq.d/                         38   0.14
VHN575 (VHN575Q) /CSM/VH/VHN5-D/VHN575Q.Seq.d/                         38   0.14
SSH490 (SSH490Q) /CSM/SS/SSH4-D/SSH490Q.Seq.d/                         38   0.14
SSD445 (SSD445Q) /CSM/SS/SSD4-B/SSD445Q.Seq.d/                         38   0.14
FC-BC14 (FC-BC14Q) /CSM/FC/FC-BC/FC-BC14Q.Seq.d/                       38   0.14
VSG642 (VSG642Q) /CSM/VS/VSG6-B/VSG642Q.Seq.d/                         36   0.56
VHP332 (VHP332Q) /CSM/VH/VHP3-B/VHP332Q.Seq.d/                         36   0.56
VHC655 (VHC655Q) /CSM/VH/VHC6-C/VHC655Q.Seq.d/                         36   0.56
VFD708 (VFD708Q) /CSM/VF/VFD7-A/VFD708Q.Seq.d/                         36   0.56
own update 2004. 6. 2
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268236) Dictyostelium discoideum vegetative cDNA clone:VS...   712   0.0    2
(AU268237) Dictyostelium discoideum vegetative cDNA clone:VS...   650   0.0    3
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    38   3e-06  13
(CR382401) Plasmodium falciparum chromosome 6, complete sequ...    36   3e-05  12
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    50   4e-05  17
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    34   8e-05  10
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   2e-04  13
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    36   6e-04  15
(AL844506) Plasmodium falciparum chromosome  7.                    36   7e-04  15
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    36   7e-04  18
dna update 2009. 7. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493919_9(DQ493919|pid:none) Campylobacter jejuni subsp. jejuni...    73   6e-12
CP000447_2583(CP000447|pid:none) Shewanella frigidimarina NCIMB ...    66   5e-10
CP000058_100(CP000058|pid:none) Pseudomonas syringae pv. phaseol...    66   5e-10
CR954246_2033(CR954246|pid:none) Pseudoalteromonas haloplanktis ...    66   5e-10
AE008384_2976(AE008384|pid:none) Methanosarcina mazei strain Goe...    66   7e-10
CP000434_153(CP000434|pid:none) Rhodococcus jostii RHA1 plasmid ...    65   1e-09
CU466930_211(CU466930|pid:none) Candidatus Cloacamonas acidamino...    64   2e-09
EU272902_13(EU272902|pid:none) Vibrio cholerae strain Amazonia i...    64   3e-09
AE003852_1736(AE003852|pid:none) Vibrio cholerae O1 biovar eltor...    64   3e-09
CP000923_1188(CP000923|pid:none) Thermoanaerobacter sp. X514, co...    64   3e-09
protein update 2009. 3.24
PSORT 

 psg: 0.58  gvh: 0.35  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VSI155 is cyt
5' end seq. ID VSI155F
5' end seq. 
>VSI155F.Seq
CAAATAAATATAAATCAATTGCAATTATTTCTGATGATATTAGATCAATGACAAATACTT
TTAGTTCAATATTAAATGGTGAAACTAGAGAAAAGAATAATATAACATATTTTTGTTTTA
CAAGTACACCAAAACCAAAAGCTTTAGAATTATTTGGTGATACAAGAGGTAATTTAAGAG
TACCATTTCATACTTATTCAATAGAGAAAGCATTACAAGATAAAATTGTTATGAATTGTA
TTGATCATTATACAACTGTTTCAATTTTAACCAAAGTTTCAAATGATAAAACAAGTGATA
CCTTTTTTAATGATGAAAATAAATCATCTTATCATATTTTAAAACATCCAAATAATGATA
AAAAAATAATTCAAGAAAAGTCATCATATATTATAAAACATTTTTTAAAATTAAGAGAAC
AAATTAATAATGATGAATTTAATTGTAGAGCAATGGTTAGTTACAAATAGTAGAGAACAA
ATTTTATTATATAAACAAACATTGGAATCATTGGTGAAATCATTACCAAAGAATCAAAAA
TTTGATATTATAGCAT----------
Length of 5' end seq. 556
3' end seq. ID VSI155Z
3' end seq. 
>VSI155Z.Seq
----------TGATGATATTAGATCAATGACAAATACTTTTAGTTCAATATTAAATGGTG
AAACTAGAGAAAAGAATAATATAACATATTTTTGTTTTACAAGTACACCAAAACCAAAAG
CTTTAGAATTATTTGGTGATACAAGAGGTAATTTAAGAGTACCATTTCATACTTATTCAA
TAGAGAAAGCATTACAAGATAAAATTGTTATGAATTGTATTGATCATTATACAACTGTTT
CAATTTTAACCAAAGTTTCAAATGATAAAACAAGTGATACCTTTTTTAATGATGAAAATA
AATCATCTTATCATATTTTAAAACATCCAAATAATGATAAAAAAATAATTCAAGAAAAGT
CATCATATATTATAAAACATTTTTTAAAATTAAGAGAACAAATTAATAATGATGAATTTA
ATTGTAGAGCAATGTTAGTTACAAATAGTAGAGAACAAATTTTATTATATAAACAAACAT
TGGAATCATTGGTGAAATCATTACCAAAGAATCAAAAATTTGATATTATAGCATGCTTTG
CAAA
Length of 3' end seq. 534
Connected seq. ID VSI155P
Connected seq. 
>VSI155P.Seq
CAAATAAATATAAATCAATTGCAATTATTTCTGATGATATTAGATCAATGACAAATACTT
TTAGTTCAATATTAAATGGTGAAACTAGAGAAAAGAATAATATAACATATTTTTGTTTTA
CAAGTACACCAAAACCAAAAGCTTTAGAATTATTTGGTGATACAAGAGGTAATTTAAGAG
TACCATTTCATACTTATTCAATAGAGAAAGCATTACAAGATAAAATTGTTATGAATTGTA
TTGATCATTATACAACTGTTTCAATTTTAACCAAAGTTTCAAATGATAAAACAAGTGATA
CCTTTTTTAATGATGAAAATAAATCATCTTATCATATTTTAAAACATCCAAATAATGATA
AAAAAATAATTCAAGAAAAGTCATCATATATTATAAAACATTTTTTAAAATTAAGAGAAC
AAATTAATAATGATGAATTTAATTGTAGAGCAATGGTTAGTTACAAATAGTAGAGAACAA
ATTTTATTATATAAACAAACATTGGAATCATTGGTGAAATCATTACCAAAGAATCAAAAA
TTTGATATTATAGCAT----------TGATGATATTAGATCAATGACAAATACTTTTAGT
TCAATATTAAATGGTGAAACTAGAGAAAAGAATAATATAACATATTTTTGTTTTACAAGT
ACACCAAAACCAAAAGCTTTAGAATTATTTGGTGATACAAGAGGTAATTTAAGAGTACCA
TTTCATACTTATTCAATAGAGAAAGCATTACAAGATAAAATTGTTATGAATTGTATTGAT
CATTATACAACTGTTTCAATTTTAACCAAAGTTTCAAATGATAAAACAAGTGATACCTTT
TTTAATGATGAAAATAAATCATCTTATCATATTTTAAAACATCCAAATAATGATAAAAAA
ATAATTCAAGAAAAGTCATCATATATTATAAAACATTTTTTAAAATTAAGAGAACAAATT
AATAATGATGAATTTAATTGTAGAGCAATGTTAGTTACAAATAGTAGAGAACAAATTTTA
TTATATAAACAAACATTGGAATCATTGGTGAAATCATTACCAAAGAATCAAAAATTTGAT
ATTATAGCATGCTTTGCAAA
Length of connected seq. 1090
Full length Seq ID VSI155E
Full length Seq. 
>VSI155E.Seq
CAAATAAATATAAATCAATTGCAATTATTTCTGATGATATTAGATCAATGACAAATACTT
TTAGTTCAATATTAAATGGTGAAACTAGAGAAAAGAATAATATAACATATTTTTGTTTTA
CAAGTACACCAAAACCAAAAGCTTTAGAATTATTTGGTGATACAAGAGGTAATTTAAGAG
TACCATTTCATACTTATTCAATAGAGAAAGCATTACAAGATAAAATTGTTATGAATTGTA
TTGATCATTATACAACTGTTTCAATTTTAACCAAAGTTTCAAATGATAAAACAAGTGATA
CCTTTTTTAATGATGAAAATAAATCATCTTATCATATTTTAAAACATCCAAATAATGATA
AAAAAATAATTCAAGAAAAGTCATCATATATTATAAAACATTTTTTAAAATTAAGAGAAC
AAATTAATAATGATGAATTTAATTGTAGAGCAATGGTTAGTTACAAATAGTAGAGAACAA
ATTTTATTATATAAACAAACATTGGAATCATTGGTGAAATCATTACCAAAGAATCAAAAA
TTTGATATTATAGCATGCTTTGCAAA
Length of full length seq. 566